Strain Fitness in Rahnella sp. WP5 around EX31_RS23575

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23570 and EX31_RS23575 overlap by 1 nucleotidesEX31_RS23575 and EX31_RS23580 are separated by 19 nucleotides EX31_RS23570: EX31_RS23570 - galactokinase, at 479,059 to 480,207 _RS23570 EX31_RS23575: EX31_RS23575 - galactose-1-phosphate uridylyltransferase, at 480,207 to 481,256 _RS23575 EX31_RS23580: EX31_RS23580 - UDP-glucose 4-epimerase GalE, at 481,276 to 482,292 _RS23580 Position (kb) 480 481 482Strain fitness (log2 ratio) -2 -1 0 1 2at 479.268 kb on + strand, within EX31_RS23570at 479.385 kb on + strand, within EX31_RS23570at 479.541 kb on - strand, within EX31_RS23570at 479.541 kb on - strand, within EX31_RS23570at 479.679 kb on + strand, within EX31_RS23570at 479.680 kb on - strand, within EX31_RS23570at 479.680 kb on - strand, within EX31_RS23570at 479.680 kb on - strand, within EX31_RS23570at 479.680 kb on - strand, within EX31_RS23570at 479.680 kb on - strand, within EX31_RS23570at 479.692 kb on - strand, within EX31_RS23570at 479.692 kb on - strand, within EX31_RS23570at 479.692 kb on - strand, within EX31_RS23570at 479.703 kb on + strand, within EX31_RS23570at 479.704 kb on - strand, within EX31_RS23570at 479.774 kb on + strand, within EX31_RS23570at 479.775 kb on - strand, within EX31_RS23570at 479.775 kb on - strand, within EX31_RS23570at 479.775 kb on - strand, within EX31_RS23570at 479.775 kb on - strand, within EX31_RS23570at 479.775 kb on - strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.958 kb on + strand, within EX31_RS23570at 479.959 kb on - strand, within EX31_RS23570at 480.031 kb on - strand, within EX31_RS23570at 480.031 kb on - strand, within EX31_RS23570at 480.031 kb on - strand, within EX31_RS23570at 480.060 kb on - strand, within EX31_RS23570at 480.095 kb on + strandat 480.096 kb on - strandat 480.102 kb on + strandat 480.103 kb on - strandat 480.144 kb on + strandat 480.145 kb on - strandat 480.583 kb on + strand, within EX31_RS23575at 480.655 kb on + strand, within EX31_RS23575at 480.655 kb on + strand, within EX31_RS23575at 480.691 kb on + strand, within EX31_RS23575at 480.692 kb on - strand, within EX31_RS23575at 480.692 kb on - strand, within EX31_RS23575at 481.022 kb on - strand, within EX31_RS23575at 481.022 kb on - strand, within EX31_RS23575at 481.031 kb on + strand, within EX31_RS23575at 481.032 kb on - strand, within EX31_RS23575at 481.052 kb on - strand, within EX31_RS23575at 481.052 kb on - strand, within EX31_RS23575at 481.189 kb on - strandat 481.189 kb on - strandat 481.267 kb on + strandat 481.268 kb on - strandat 481.277 kb on + strandat 481.278 kb on - strandat 481.278 kb on - strandat 481.398 kb on - strand, within EX31_RS23580at 481.437 kb on - strand, within EX31_RS23580at 481.437 kb on - strand, within EX31_RS23580at 481.437 kb on - strand, within EX31_RS23580at 481.475 kb on - strand, within EX31_RS23580at 481.475 kb on - strand, within EX31_RS23580at 481.475 kb on - strand, within EX31_RS23580at 481.516 kb on - strand, within EX31_RS23580at 481.516 kb on - strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.518 kb on - strand, within EX31_RS23580at 481.518 kb on - strand, within EX31_RS23580at 481.521 kb on + strand, within EX31_RS23580at 481.521 kb on + strand, within EX31_RS23580at 481.521 kb on + strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.525 kb on + strand, within EX31_RS23580at 481.526 kb on - strand, within EX31_RS23580at 481.526 kb on - strand, within EX31_RS23580at 481.526 kb on - strand, within EX31_RS23580at 481.526 kb on - strand, within EX31_RS23580at 481.526 kb on - strand, within EX31_RS23580at 481.593 kb on + strand, within EX31_RS23580at 481.593 kb on + strand, within EX31_RS23580at 481.594 kb on - strand, within EX31_RS23580at 481.594 kb on - strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.673 kb on - strand, within EX31_RS23580at 481.698 kb on + strand, within EX31_RS23580at 481.763 kb on + strand, within EX31_RS23580at 481.764 kb on - strand, within EX31_RS23580at 481.777 kb on - strand, within EX31_RS23580at 481.777 kb on - strand, within EX31_RS23580at 481.886 kb on + strand, within EX31_RS23580at 481.886 kb on + strand, within EX31_RS23580at 481.887 kb on - strand, within EX31_RS23580at 481.911 kb on - strand, within EX31_RS23580at 482.004 kb on - strand, within EX31_RS23580at 482.004 kb on - strand, within EX31_RS23580at 482.006 kb on + strand, within EX31_RS23580at 482.006 kb on + strand, within EX31_RS23580at 482.007 kb on - strand, within EX31_RS23580at 482.130 kb on - strand, within EX31_RS23580at 482.130 kb on - strand, within EX31_RS23580at 482.130 kb on - strand, within EX31_RS23580at 482.174 kb on - strand, within EX31_RS23580at 482.190 kb on + strand, within EX31_RS23580at 482.217 kb on + strandat 482.247 kb on + strandat 482.247 kb on + strandat 482.248 kb on - strandat 482.248 kb on - strandat 482.248 kb on - strandat 482.248 kb on - strandat 482.248 kb on - strandat 482.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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479,268 + EX31_RS23570 0.18 -0.9
479,385 + EX31_RS23570 0.28 +1.2
479,541 - EX31_RS23570 0.42 +0.3
479,541 - EX31_RS23570 0.42 -0.9
479,679 + EX31_RS23570 0.54 -1.3
479,680 - EX31_RS23570 0.54 +0.4
479,680 - EX31_RS23570 0.54 +0.5
479,680 - EX31_RS23570 0.54 -1.3
479,680 - EX31_RS23570 0.54 -0.0
479,680 - EX31_RS23570 0.54 +1.5
479,692 - EX31_RS23570 0.55 -0.0
479,692 - EX31_RS23570 0.55 -0.3
479,692 - EX31_RS23570 0.55 +1.1
479,703 + EX31_RS23570 0.56 +0.4
479,704 - EX31_RS23570 0.56 +0.2
479,774 + EX31_RS23570 0.62 +0.3
479,775 - EX31_RS23570 0.62 -0.1
479,775 - EX31_RS23570 0.62 +0.3
479,775 - EX31_RS23570 0.62 -0.5
479,775 - EX31_RS23570 0.62 -1.0
479,775 - EX31_RS23570 0.62 -0.2
479,924 + EX31_RS23570 0.75 +1.0
479,924 + EX31_RS23570 0.75 -0.4
479,924 + EX31_RS23570 0.75 -0.2
479,924 + EX31_RS23570 0.75 +0.8
479,924 + EX31_RS23570 0.75 +1.0
479,924 + EX31_RS23570 0.75 -0.1
479,924 + EX31_RS23570 0.75 +0.3
479,924 + EX31_RS23570 0.75 -0.5
479,925 - EX31_RS23570 0.75 +0.1
479,925 - EX31_RS23570 0.75 -0.8
479,925 - EX31_RS23570 0.75 -0.6
479,925 - EX31_RS23570 0.75 -0.8
479,925 - EX31_RS23570 0.75 +1.0
479,925 - EX31_RS23570 0.75 -1.0
479,958 + EX31_RS23570 0.78 -1.9
479,959 - EX31_RS23570 0.78 +0.2
480,031 - EX31_RS23570 0.85 +0.2
480,031 - EX31_RS23570 0.85 -0.7
480,031 - EX31_RS23570 0.85 +0.3
480,060 - EX31_RS23570 0.87 -0.5
480,095 + +0.2
480,096 - -0.7
480,102 + -0.0
480,103 - +1.4
480,144 + +0.4
480,145 - -0.2
480,583 + EX31_RS23575 0.36 +0.3
480,655 + EX31_RS23575 0.43 +0.3
480,655 + EX31_RS23575 0.43 -0.4
480,691 + EX31_RS23575 0.46 -1.9
480,692 - EX31_RS23575 0.46 +0.1
480,692 - EX31_RS23575 0.46 -0.8
481,022 - EX31_RS23575 0.78 -1.2
481,022 - EX31_RS23575 0.78 -0.2
481,031 + EX31_RS23575 0.78 +0.4
481,032 - EX31_RS23575 0.79 -2.1
481,052 - EX31_RS23575 0.80 -1.7
481,052 - EX31_RS23575 0.80 -0.6
481,189 - +0.1
481,189 - -0.5
481,267 + -0.7
481,268 - +0.1
481,277 + +0.5
481,278 - +0.3
481,278 - -0.7
481,398 - EX31_RS23580 0.12 +0.5
481,437 - EX31_RS23580 0.16 -0.2
481,437 - EX31_RS23580 0.16 +0.1
481,437 - EX31_RS23580 0.16 +1.2
481,475 - EX31_RS23580 0.20 -0.8
481,475 - EX31_RS23580 0.20 -1.0
481,475 - EX31_RS23580 0.20 -0.7
481,516 - EX31_RS23580 0.24 -0.9
481,516 - EX31_RS23580 0.24 +0.3
481,517 + EX31_RS23580 0.24 -0.1
481,517 + EX31_RS23580 0.24 -1.3
481,517 + EX31_RS23580 0.24 -0.6
481,517 + EX31_RS23580 0.24 -0.3
481,517 + EX31_RS23580 0.24 +0.1
481,517 + EX31_RS23580 0.24 +0.6
481,517 + EX31_RS23580 0.24 -0.6
481,518 - EX31_RS23580 0.24 +0.3
481,518 - EX31_RS23580 0.24 -1.1
481,521 + EX31_RS23580 0.24 +0.4
481,521 + EX31_RS23580 0.24 -0.8
481,521 + EX31_RS23580 0.24 +1.8
481,522 - EX31_RS23580 0.24 -0.7
481,522 - EX31_RS23580 0.24 -0.1
481,522 - EX31_RS23580 0.24 -2.2
481,522 - EX31_RS23580 0.24 -0.5
481,522 - EX31_RS23580 0.24 -1.0
481,522 - EX31_RS23580 0.24 -1.2
481,522 - EX31_RS23580 0.24 -1.2
481,522 - EX31_RS23580 0.24 -1.3
481,522 - EX31_RS23580 0.24 +0.2
481,525 + EX31_RS23580 0.24 +0.8
481,526 - EX31_RS23580 0.25 +0.2
481,526 - EX31_RS23580 0.25 -0.9
481,526 - EX31_RS23580 0.25 +0.2
481,526 - EX31_RS23580 0.25 -0.5
481,526 - EX31_RS23580 0.25 +0.4
481,593 + EX31_RS23580 0.31 -0.4
481,593 + EX31_RS23580 0.31 -0.6
481,594 - EX31_RS23580 0.31 +0.1
481,594 - EX31_RS23580 0.31 +0.7
481,595 + EX31_RS23580 0.31 -0.9
481,595 + EX31_RS23580 0.31 -0.1
481,595 + EX31_RS23580 0.31 +0.5
481,595 + EX31_RS23580 0.31 -0.0
481,595 + EX31_RS23580 0.31 -0.2
481,595 + EX31_RS23580 0.31 +0.7
481,595 + EX31_RS23580 0.31 -0.2
481,596 - EX31_RS23580 0.31 -1.3
481,596 - EX31_RS23580 0.31 -0.8
481,596 - EX31_RS23580 0.31 -1.0
481,596 - EX31_RS23580 0.31 -0.2
481,596 - EX31_RS23580 0.31 -1.8
481,596 - EX31_RS23580 0.31 -2.5
481,596 - EX31_RS23580 0.31 +0.4
481,596 - EX31_RS23580 0.31 +1.1
481,596 - EX31_RS23580 0.31 -0.1
481,596 - EX31_RS23580 0.31 -0.5
481,596 - EX31_RS23580 0.31 -0.3
481,596 - EX31_RS23580 0.31 +0.8
481,673 - EX31_RS23580 0.39 -0.8
481,698 + EX31_RS23580 0.41 +1.0
481,763 + EX31_RS23580 0.48 +0.9
481,764 - EX31_RS23580 0.48 -0.2
481,777 - EX31_RS23580 0.49 -0.6
481,777 - EX31_RS23580 0.49 -1.7
481,886 + EX31_RS23580 0.60 -0.1
481,886 + EX31_RS23580 0.60 -1.1
481,887 - EX31_RS23580 0.60 -0.1
481,911 - EX31_RS23580 0.62 +0.5
482,004 - EX31_RS23580 0.72 -1.0
482,004 - EX31_RS23580 0.72 -0.8
482,006 + EX31_RS23580 0.72 -0.9
482,006 + EX31_RS23580 0.72 -0.7
482,007 - EX31_RS23580 0.72 +0.8
482,130 - EX31_RS23580 0.84 -0.3
482,130 - EX31_RS23580 0.84 -0.8
482,130 - EX31_RS23580 0.84 -0.0
482,174 - EX31_RS23580 0.88 +0.9
482,190 + EX31_RS23580 0.90 -0.3
482,217 + -0.2
482,247 + +0.1
482,247 + -0.6
482,248 - -1.8
482,248 - +0.1
482,248 - +0.8
482,248 - +1.3
482,248 - -0.2
482,248 - +0.1

Or see this region's nucleotide sequence