Strain Fitness in Rahnella sp. WP5 around EX31_RS22840

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22835 and EX31_RS22840 are separated by 185 nucleotidesEX31_RS22840 and EX31_RS22845 are separated by 146 nucleotidesEX31_RS22845 and EX31_RS22850 are separated by 102 nucleotides EX31_RS22835: EX31_RS22835 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 327,544 to 328,416 _RS22835 EX31_RS22840: EX31_RS22840 - L-lactate dehydrogenase, at 328,602 to 329,513 _RS22840 EX31_RS22845: EX31_RS22845 - tRNA-Arg, at 329,660 to 329,736 _RS22845 EX31_RS22850: EX31_RS22850 - DUF4942 domain-containing protein, at 329,839 to 330,690 _RS22850 Position (kb) 328 329 330Strain fitness (log2 ratio) -2 -1 0 1 2 3at 328.434 kb on - strandat 328.438 kb on - strandat 328.438 kb on - strandat 328.438 kb on - strandat 328.505 kb on - strandat 328.512 kb on + strandat 328.559 kb on + strandat 328.559 kb on + strandat 328.560 kb on - strandat 328.560 kb on - strandat 328.564 kb on + strandat 328.568 kb on + strandat 328.568 kb on + strandat 328.581 kb on - strandat 328.715 kb on + strand, within EX31_RS22840at 328.715 kb on + strand, within EX31_RS22840at 328.715 kb on + strand, within EX31_RS22840at 328.715 kb on + strand, within EX31_RS22840at 328.716 kb on - strand, within EX31_RS22840at 328.716 kb on - strand, within EX31_RS22840at 328.716 kb on - strand, within EX31_RS22840at 328.795 kb on - strand, within EX31_RS22840at 329.291 kb on + strand, within EX31_RS22840at 329.379 kb on + strand, within EX31_RS22840at 329.379 kb on + strand, within EX31_RS22840at 329.380 kb on - strand, within EX31_RS22840at 329.380 kb on - strand, within EX31_RS22840at 329.380 kb on - strand, within EX31_RS22840at 329.380 kb on - strand, within EX31_RS22840at 329.414 kb on + strand, within EX31_RS22840at 329.415 kb on - strand, within EX31_RS22840at 329.419 kb on + strand, within EX31_RS22840at 329.420 kb on - strand, within EX31_RS22840at 329.420 kb on - strand, within EX31_RS22840at 329.420 kb on - strand, within EX31_RS22840at 329.429 kb on - strandat 329.429 kb on - strandat 329.459 kb on - strandat 329.459 kb on - strandat 329.511 kb on + strandat 329.512 kb on - strandat 329.529 kb on + strandat 329.529 kb on + strandat 329.529 kb on + strandat 329.529 kb on + strandat 329.529 kb on + strandat 329.529 kb on + strandat 329.529 kb on + strandat 329.529 kb on + strandat 329.529 kb on + strandat 329.530 kb on - strandat 329.530 kb on - strandat 329.530 kb on - strandat 329.530 kb on - strandat 329.554 kb on - strandat 329.554 kb on - strandat 329.575 kb on + strandat 329.794 kb on + strandat 329.810 kb on + strandat 329.810 kb on + strandat 329.810 kb on + strandat 329.811 kb on - strandat 329.850 kb on + strandat 329.850 kb on + strandat 329.883 kb on + strandat 329.883 kb on + strandat 329.883 kb on + strandat 329.884 kb on - strandat 329.884 kb on - strandat 329.948 kb on + strand, within EX31_RS22850at 329.995 kb on - strand, within EX31_RS22850at 329.995 kb on - strand, within EX31_RS22850at 330.049 kb on - strand, within EX31_RS22850at 330.049 kb on - strand, within EX31_RS22850at 330.123 kb on + strand, within EX31_RS22850at 330.124 kb on - strand, within EX31_RS22850at 330.137 kb on + strand, within EX31_RS22850at 330.154 kb on - strand, within EX31_RS22850at 330.158 kb on - strand, within EX31_RS22850at 330.158 kb on - strand, within EX31_RS22850at 330.158 kb on - strand, within EX31_RS22850at 330.163 kb on - strand, within EX31_RS22850at 330.211 kb on + strand, within EX31_RS22850at 330.211 kb on + strand, within EX31_RS22850at 330.211 kb on + strand, within EX31_RS22850at 330.220 kb on - strand, within EX31_RS22850at 330.231 kb on + strand, within EX31_RS22850at 330.232 kb on - strand, within EX31_RS22850at 330.232 kb on - strand, within EX31_RS22850at 330.282 kb on + strand, within EX31_RS22850at 330.283 kb on - strand, within EX31_RS22850at 330.435 kb on + strand, within EX31_RS22850

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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328,434 - +1.3
328,438 - -0.5
328,438 - -0.0
328,438 - +0.3
328,505 - +0.6
328,512 + -1.5
328,559 + -0.5
328,559 + -0.5
328,560 - -0.8
328,560 - +0.7
328,564 + +0.7
328,568 + +1.0
328,568 + -1.3
328,581 - -0.1
328,715 + EX31_RS22840 0.12 -0.8
328,715 + EX31_RS22840 0.12 -1.0
328,715 + EX31_RS22840 0.12 -1.1
328,715 + EX31_RS22840 0.12 -0.2
328,716 - EX31_RS22840 0.12 +0.3
328,716 - EX31_RS22840 0.12 -0.9
328,716 - EX31_RS22840 0.12 -0.1
328,795 - EX31_RS22840 0.21 +0.8
329,291 + EX31_RS22840 0.76 -0.3
329,379 + EX31_RS22840 0.85 -0.6
329,379 + EX31_RS22840 0.85 +0.8
329,380 - EX31_RS22840 0.85 -1.1
329,380 - EX31_RS22840 0.85 -1.1
329,380 - EX31_RS22840 0.85 +0.3
329,380 - EX31_RS22840 0.85 -2.2
329,414 + EX31_RS22840 0.89 -1.9
329,415 - EX31_RS22840 0.89 -0.2
329,419 + EX31_RS22840 0.90 +0.1
329,420 - EX31_RS22840 0.90 -1.1
329,420 - EX31_RS22840 0.90 +0.3
329,420 - EX31_RS22840 0.90 +0.7
329,429 - +2.1
329,429 - +1.5
329,459 - +0.1
329,459 - +0.1
329,511 + +0.5
329,512 - -0.7
329,529 + +2.9
329,529 + -0.7
329,529 + +0.3
329,529 + -0.4
329,529 + +0.6
329,529 + -0.6
329,529 + +0.1
329,529 + +0.4
329,529 + +0.0
329,530 - +0.2
329,530 - +0.9
329,530 - +0.1
329,530 - -0.3
329,554 - -0.7
329,554 - -0.4
329,575 + +1.0
329,794 + -1.9
329,810 + +0.9
329,810 + -0.1
329,810 + +0.1
329,811 - +1.3
329,850 + -0.2
329,850 + +0.1
329,883 + -2.2
329,883 + +0.2
329,883 + +0.1
329,884 - +0.2
329,884 - -0.1
329,948 + EX31_RS22850 0.13 -1.3
329,995 - EX31_RS22850 0.18 +0.6
329,995 - EX31_RS22850 0.18 +0.1
330,049 - EX31_RS22850 0.25 -0.6
330,049 - EX31_RS22850 0.25 +0.6
330,123 + EX31_RS22850 0.33 -1.5
330,124 - EX31_RS22850 0.33 -0.3
330,137 + EX31_RS22850 0.35 -0.3
330,154 - EX31_RS22850 0.37 +0.3
330,158 - EX31_RS22850 0.37 -0.5
330,158 - EX31_RS22850 0.37 -0.7
330,158 - EX31_RS22850 0.37 -0.2
330,163 - EX31_RS22850 0.38 -0.6
330,211 + EX31_RS22850 0.44 +0.5
330,211 + EX31_RS22850 0.44 +0.3
330,211 + EX31_RS22850 0.44 -1.4
330,220 - EX31_RS22850 0.45 -0.1
330,231 + EX31_RS22850 0.46 -0.6
330,232 - EX31_RS22850 0.46 +0.1
330,232 - EX31_RS22850 0.46 -0.6
330,282 + EX31_RS22850 0.52 -1.1
330,283 - EX31_RS22850 0.52 -0.2
330,435 + EX31_RS22850 0.70 +0.6

Or see this region's nucleotide sequence