Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22425 and EX31_RS22430 are separated by 75 nucleotides EX31_RS22430 and EX31_RS22435 are separated by 45 nucleotides EX31_RS22435 and EX31_RS22440 are separated by 229 nucleotides EX31_RS22440 and EX31_RS22445 are separated by 349 nucleotides
EX31_RS22425: EX31_RS22425 - LysR family transcriptional regulator, at 237,302 to 238,258
_RS22425
EX31_RS22430: EX31_RS22430 - hemolysin expression modulator Hha, at 238,334 to 238,537
_RS22430
EX31_RS22435: EX31_RS22435 - Hha toxicity modulator TomB, at 238,583 to 238,951
_RS22435
EX31_RS22440: EX31_RS22440 - hypothetical protein, at 239,181 to 239,534
_RS22440
EX31_RS22445: EX31_RS22445 - ABC transporter ATP-binding protein, at 239,884 to 240,645
_RS22445
Position (kb) 239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 238.254 kb on + strand at 238.254 kb on + strand at 238.254 kb on + strand at 238.254 kb on + strand at 238.255 kb on - strand at 238.256 kb on + strand at 238.256 kb on + strand at 238.257 kb on - strand at 238.257 kb on - strand at 238.257 kb on - strand at 238.257 kb on - strand at 238.260 kb on + strand at 238.260 kb on + strand at 238.260 kb on + strand at 238.261 kb on - strand at 238.261 kb on - strand at 238.267 kb on + strand at 238.267 kb on + strand at 238.276 kb on + strand at 238.289 kb on + strand at 238.313 kb on - strand at 238.329 kb on - strand at 238.331 kb on - strand at 238.331 kb on - strand at 238.331 kb on - strand at 238.331 kb on - strand at 238.374 kb on + strand, within EX31_RS22430 at 238.456 kb on - strand, within EX31_RS22430 at 238.456 kb on - strand, within EX31_RS22430 at 238.472 kb on - strand, within EX31_RS22430 at 238.571 kb on - strand at 238.571 kb on - strand at 238.573 kb on - strand at 238.573 kb on - strand at 238.573 kb on - strand at 238.573 kb on - strand at 238.578 kb on - strand at 238.608 kb on + strand at 238.609 kb on - strand at 238.609 kb on - strand at 238.661 kb on + strand, within EX31_RS22435 at 238.684 kb on - strand, within EX31_RS22435 at 238.688 kb on - strand, within EX31_RS22435 at 238.702 kb on - strand, within EX31_RS22435 at 238.702 kb on - strand, within EX31_RS22435 at 238.702 kb on - strand, within EX31_RS22435 at 238.706 kb on - strand, within EX31_RS22435 at 238.706 kb on - strand, within EX31_RS22435 at 238.717 kb on - strand, within EX31_RS22435 at 238.717 kb on - strand, within EX31_RS22435 at 238.760 kb on - strand, within EX31_RS22435 at 238.760 kb on - strand, within EX31_RS22435 at 238.820 kb on - strand, within EX31_RS22435 at 238.888 kb on - strand, within EX31_RS22435 at 238.888 kb on - strand, within EX31_RS22435 at 238.911 kb on - strand, within EX31_RS22435 at 238.911 kb on - strand, within EX31_RS22435 at 238.911 kb on - strand, within EX31_RS22435 at 238.942 kb on - strand at 238.942 kb on - strand at 238.952 kb on - strand at 238.974 kb on - strand at 238.987 kb on - strand at 238.987 kb on - strand at 239.015 kb on - strand at 239.115 kb on + strand at 239.116 kb on - strand at 239.116 kb on - strand at 239.116 kb on - strand at 239.116 kb on - strand at 239.119 kb on - strand at 239.119 kb on - strand at 239.121 kb on - strand at 239.121 kb on - strand at 239.121 kb on - strand at 239.121 kb on - strand at 239.121 kb on - strand at 239.129 kb on + strand at 239.152 kb on - strand at 239.170 kb on - strand at 239.170 kb on - strand at 239.170 kb on - strand at 239.170 kb on - strand at 239.183 kb on - strand at 239.223 kb on - strand, within EX31_RS22440 at 239.330 kb on - strand, within EX31_RS22440 at 239.330 kb on - strand, within EX31_RS22440 at 239.359 kb on - strand, within EX31_RS22440 at 239.422 kb on - strand, within EX31_RS22440 at 239.434 kb on - strand, within EX31_RS22440 at 239.469 kb on - strand, within EX31_RS22440 at 239.499 kb on - strand at 239.508 kb on - strand at 239.510 kb on + strand at 239.511 kb on - strand at 239.543 kb on - strand at 239.543 kb on - strand at 239.549 kb on + strand at 239.550 kb on - strand at 239.550 kb on - strand at 239.550 kb on - strand at 239.558 kb on - strand at 239.558 kb on - strand at 239.558 kb on - strand at 239.693 kb on + strand at 239.694 kb on - strand at 239.760 kb on + strand at 239.760 kb on + strand at 239.760 kb on + strand at 239.760 kb on + strand at 239.761 kb on - strand at 239.761 kb on - strand at 239.761 kb on - strand at 239.761 kb on - strand at 239.761 kb on - strand at 239.761 kb on - strand at 239.761 kb on - strand at 239.766 kb on + strand at 239.766 kb on + strand at 239.767 kb on - strand at 239.772 kb on + strand at 239.772 kb on + strand at 239.772 kb on + strand at 239.772 kb on + strand at 239.772 kb on + strand at 239.830 kb on + strand at 239.830 kb on + strand at 239.830 kb on + strand at 239.862 kb on + strand at 239.893 kb on + strand at 239.894 kb on - strand at 239.897 kb on + strand at 239.897 kb on + strand at 239.897 kb on + strand at 239.897 kb on + strand at 239.897 kb on + strand at 239.897 kb on + strand at 239.897 kb on + strand at 239.898 kb on - strand at 239.913 kb on + strand at 239.928 kb on + strand at 239.976 kb on + strand, within EX31_RS22445 at 240.087 kb on + strand, within EX31_RS22445 at 240.087 kb on + strand, within EX31_RS22445 at 240.087 kb on + strand, within EX31_RS22445 at 240.087 kb on + strand, within EX31_RS22445 at 240.088 kb on - strand, within EX31_RS22445 at 240.088 kb on - strand, within EX31_RS22445 at 240.089 kb on + strand, within EX31_RS22445 at 240.089 kb on + strand, within EX31_RS22445 at 240.089 kb on + strand, within EX31_RS22445 at 240.090 kb on - strand, within EX31_RS22445 at 240.124 kb on + strand, within EX31_RS22445 at 240.162 kb on + strand, within EX31_RS22445 at 240.299 kb on + strand, within EX31_RS22445 at 240.330 kb on + strand, within EX31_RS22445 at 240.330 kb on + strand, within EX31_RS22445 at 240.330 kb on + strand, within EX31_RS22445 at 240.330 kb on + strand, within EX31_RS22445 at 240.347 kb on + strand, within EX31_RS22445 at 240.347 kb on + strand, within EX31_RS22445 at 240.372 kb on + strand, within EX31_RS22445 at 240.372 kb on + strand, within EX31_RS22445 at 240.372 kb on + strand, within EX31_RS22445 at 240.372 kb on + strand, within EX31_RS22445 at 240.373 kb on - strand, within EX31_RS22445 at 240.419 kb on + strand, within EX31_RS22445 at 240.420 kb on - strand, within EX31_RS22445 at 240.425 kb on + strand, within EX31_RS22445 at 240.484 kb on - strand, within EX31_RS22445
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 238,254 + +0.9 238,254 + -1.0 238,254 + +0.4 238,254 + +0.6 238,255 - -0.1 238,256 + -0.4 238,256 + +0.3 238,257 - +0.2 238,257 - +0.1 238,257 - +0.2 238,257 - -0.6 238,260 + +0.7 238,260 + -1.4 238,260 + +0.3 238,261 - +0.3 238,261 - +0.1 238,267 + +0.7 238,267 + -0.3 238,276 + -0.5 238,289 + -1.3 238,313 - +0.0 238,329 - +0.2 238,331 - +0.1 238,331 - +0.1 238,331 - +0.5 238,331 - -0.4 238,374 + EX31_RS22430 0.20 +0.1 238,456 - EX31_RS22430 0.60 -0.2 238,456 - EX31_RS22430 0.60 -0.9 238,472 - EX31_RS22430 0.68 +1.8 238,571 - +1.0 238,571 - +0.8 238,573 - -0.1 238,573 - +0.3 238,573 - +1.7 238,573 - +0.4 238,578 - -0.7 238,608 + -1.8 238,609 - +0.5 238,609 - -0.4 238,661 + EX31_RS22435 0.21 +1.5 238,684 - EX31_RS22435 0.27 -0.4 238,688 - EX31_RS22435 0.28 +0.0 238,702 - EX31_RS22435 0.32 -0.1 238,702 - EX31_RS22435 0.32 +1.0 238,702 - EX31_RS22435 0.32 +0.1 238,706 - EX31_RS22435 0.33 -0.6 238,706 - EX31_RS22435 0.33 +0.5 238,717 - EX31_RS22435 0.36 -0.3 238,717 - EX31_RS22435 0.36 +0.3 238,760 - EX31_RS22435 0.48 +0.4 238,760 - EX31_RS22435 0.48 -1.9 238,820 - EX31_RS22435 0.64 +2.9 238,888 - EX31_RS22435 0.83 +0.8 238,888 - EX31_RS22435 0.83 -0.0 238,911 - EX31_RS22435 0.89 +0.0 238,911 - EX31_RS22435 0.89 -1.4 238,911 - EX31_RS22435 0.89 -0.2 238,942 - +0.2 238,942 - -0.5 238,952 - +0.5 238,974 - +0.2 238,987 - +1.5 238,987 - -1.2 239,015 - -1.0 239,115 + -1.3 239,116 - -0.6 239,116 - +0.3 239,116 - +0.2 239,116 - -0.0 239,119 - -0.4 239,119 - -0.2 239,121 - -0.3 239,121 - +0.0 239,121 - -0.3 239,121 - -0.0 239,121 - -0.5 239,129 + +1.4 239,152 - +0.2 239,170 - -0.6 239,170 - +0.6 239,170 - +0.9 239,170 - -0.3 239,183 - -1.0 239,223 - EX31_RS22440 0.12 -0.9 239,330 - EX31_RS22440 0.42 +0.2 239,330 - EX31_RS22440 0.42 -0.1 239,359 - EX31_RS22440 0.50 -0.6 239,422 - EX31_RS22440 0.68 -0.5 239,434 - EX31_RS22440 0.71 -1.7 239,469 - EX31_RS22440 0.81 +0.2 239,499 - -0.1 239,508 - +0.4 239,510 + +0.7 239,511 - +0.4 239,543 - -0.1 239,543 - -0.0 239,549 + +0.2 239,550 - +1.0 239,550 - +0.3 239,550 - +0.0 239,558 - +0.5 239,558 - -0.3 239,558 - +0.1 239,693 + -0.6 239,694 - -0.2 239,760 + -0.5 239,760 + +0.2 239,760 + +0.3 239,760 + -1.0 239,761 - +0.0 239,761 - +0.5 239,761 - -0.6 239,761 - -1.1 239,761 - +0.3 239,761 - +1.3 239,761 - +0.5 239,766 + +0.5 239,766 + +0.9 239,767 - +0.5 239,772 + +0.2 239,772 + -0.0 239,772 + -0.4 239,772 + +1.3 239,772 + -0.6 239,830 + -0.7 239,830 + +0.1 239,830 + +0.6 239,862 + -0.3 239,893 + -0.8 239,894 - -3.0 239,897 + -1.7 239,897 + -0.3 239,897 + -3.1 239,897 + +0.6 239,897 + -1.5 239,897 + -0.6 239,897 + -0.0 239,898 - -2.5 239,913 + -0.5 239,928 + +0.4 239,976 + EX31_RS22445 0.12 +0.4 240,087 + EX31_RS22445 0.27 -0.3 240,087 + EX31_RS22445 0.27 -1.4 240,087 + EX31_RS22445 0.27 -0.3 240,087 + EX31_RS22445 0.27 +0.3 240,088 - EX31_RS22445 0.27 +0.1 240,088 - EX31_RS22445 0.27 +0.8 240,089 + EX31_RS22445 0.27 +0.1 240,089 + EX31_RS22445 0.27 -0.1 240,089 + EX31_RS22445 0.27 +0.8 240,090 - EX31_RS22445 0.27 -0.1 240,124 + EX31_RS22445 0.31 +0.3 240,162 + EX31_RS22445 0.36 -0.1 240,299 + EX31_RS22445 0.54 -0.4 240,330 + EX31_RS22445 0.59 -0.1 240,330 + EX31_RS22445 0.59 +1.2 240,330 + EX31_RS22445 0.59 +0.8 240,330 + EX31_RS22445 0.59 -0.2 240,347 + EX31_RS22445 0.61 -1.5 240,347 + EX31_RS22445 0.61 -0.2 240,372 + EX31_RS22445 0.64 -0.5 240,372 + EX31_RS22445 0.64 +0.9 240,372 + EX31_RS22445 0.64 -0.8 240,372 + EX31_RS22445 0.64 -1.5 240,373 - EX31_RS22445 0.64 +0.5 240,419 + EX31_RS22445 0.70 -2.4 240,420 - EX31_RS22445 0.70 -0.3 240,425 + EX31_RS22445 0.71 -0.3 240,484 - EX31_RS22445 0.79 -0.6
Or see this region's nucleotide sequence