Strain Fitness in Rahnella sp. WP5 around EX31_RS22260

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22255 and EX31_RS22260 are separated by 216 nucleotidesEX31_RS22260 and EX31_RS22265 are separated by 164 nucleotides EX31_RS22255: EX31_RS22255 - endopeptidase La, at 201,297 to 203,651 _RS22255 EX31_RS22260: EX31_RS22260 - DNA-binding protein HU-beta, at 203,868 to 204,143 _RS22260 EX31_RS22265: EX31_RS22265 - peptidylprolyl isomerase, at 204,308 to 206,188 _RS22265 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2at 202.899 kb on + strand, within EX31_RS22255at 202.900 kb on - strand, within EX31_RS22255at 202.900 kb on - strand, within EX31_RS22255at 202.900 kb on - strand, within EX31_RS22255at 202.918 kb on + strand, within EX31_RS22255at 202.918 kb on + strand, within EX31_RS22255at 202.918 kb on + strand, within EX31_RS22255at 202.918 kb on + strand, within EX31_RS22255at 202.918 kb on + strand, within EX31_RS22255at 202.918 kb on + strand, within EX31_RS22255at 202.922 kb on + strand, within EX31_RS22255at 202.922 kb on + strand, within EX31_RS22255at 202.922 kb on + strand, within EX31_RS22255at 202.955 kb on + strand, within EX31_RS22255at 203.162 kb on + strand, within EX31_RS22255at 203.162 kb on + strand, within EX31_RS22255at 203.172 kb on + strand, within EX31_RS22255at 203.172 kb on + strand, within EX31_RS22255at 203.299 kb on + strand, within EX31_RS22255at 203.351 kb on + strand, within EX31_RS22255at 203.351 kb on + strand, within EX31_RS22255at 203.622 kb on + strandat 203.663 kb on + strandat 203.663 kb on + strandat 203.664 kb on - strandat 203.733 kb on + strandat 203.733 kb on + strandat 203.734 kb on - strandat 203.795 kb on + strandat 203.795 kb on + strandat 203.795 kb on + strandat 203.795 kb on + strandat 203.795 kb on + strandat 203.795 kb on + strandat 203.795 kb on + strandat 203.796 kb on - strandat 203.796 kb on - strandat 203.797 kb on + strandat 203.850 kb on + strandat 203.863 kb on + strandat 203.863 kb on + strandat 203.863 kb on + strandat 203.864 kb on - strandat 203.864 kb on - strandat 203.873 kb on + strandat 203.873 kb on + strandat 203.873 kb on + strandat 203.873 kb on + strandat 203.873 kb on + strandat 203.874 kb on - strandat 203.941 kb on + strand, within EX31_RS22260at 203.941 kb on + strand, within EX31_RS22260at 203.941 kb on + strand, within EX31_RS22260at 203.941 kb on + strand, within EX31_RS22260at 203.942 kb on - strand, within EX31_RS22260at 203.992 kb on + strand, within EX31_RS22260at 203.992 kb on + strand, within EX31_RS22260at 204.041 kb on + strand, within EX31_RS22260at 204.042 kb on - strand, within EX31_RS22260at 204.113 kb on + strand, within EX31_RS22260at 204.113 kb on + strand, within EX31_RS22260at 204.113 kb on + strand, within EX31_RS22260at 204.114 kb on - strand, within EX31_RS22260at 204.145 kb on + strandat 204.220 kb on - strandat 204.246 kb on + strandat 204.246 kb on + strandat 204.246 kb on + strandat 204.246 kb on + strandat 204.246 kb on + strandat 204.246 kb on + strandat 204.246 kb on + strandat 204.246 kb on + strandat 204.247 kb on - strandat 204.251 kb on + strandat 204.251 kb on + strandat 204.251 kb on + strandat 204.251 kb on + strandat 204.251 kb on + strandat 204.251 kb on + strandat 204.307 kb on + strandat 204.308 kb on - strandat 204.308 kb on - strandat 204.321 kb on + strandat 204.370 kb on + strandat 204.382 kb on + strandat 204.382 kb on + strandat 204.404 kb on + strandat 204.404 kb on + strandat 204.404 kb on + strandat 204.404 kb on + strandat 204.405 kb on - strandat 204.428 kb on + strandat 204.428 kb on + strandat 204.456 kb on + strandat 204.556 kb on + strand, within EX31_RS22265at 204.556 kb on + strand, within EX31_RS22265at 204.556 kb on + strand, within EX31_RS22265at 204.618 kb on - strand, within EX31_RS22265at 204.715 kb on + strand, within EX31_RS22265at 204.715 kb on + strand, within EX31_RS22265at 204.715 kb on + strand, within EX31_RS22265at 204.715 kb on + strand, within EX31_RS22265at 204.719 kb on + strand, within EX31_RS22265at 204.720 kb on - strand, within EX31_RS22265at 204.746 kb on + strand, within EX31_RS22265at 204.746 kb on + strand, within EX31_RS22265at 204.746 kb on + strand, within EX31_RS22265at 204.786 kb on + strand, within EX31_RS22265at 204.786 kb on + strand, within EX31_RS22265at 204.786 kb on + strand, within EX31_RS22265at 204.847 kb on + strand, within EX31_RS22265at 204.855 kb on + strand, within EX31_RS22265at 204.856 kb on - strand, within EX31_RS22265at 204.922 kb on + strand, within EX31_RS22265at 204.959 kb on + strand, within EX31_RS22265at 204.959 kb on + strand, within EX31_RS22265at 205.011 kb on - strand, within EX31_RS22265at 205.076 kb on + strand, within EX31_RS22265at 205.079 kb on + strand, within EX31_RS22265at 205.079 kb on + strand, within EX31_RS22265at 205.079 kb on + strand, within EX31_RS22265at 205.090 kb on + strand, within EX31_RS22265at 205.124 kb on + strand, within EX31_RS22265

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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202,899 + EX31_RS22255 0.68 -0.7
202,900 - EX31_RS22255 0.68 +0.2
202,900 - EX31_RS22255 0.68 +0.3
202,900 - EX31_RS22255 0.68 -0.2
202,918 + EX31_RS22255 0.69 +0.6
202,918 + EX31_RS22255 0.69 -0.2
202,918 + EX31_RS22255 0.69 -1.4
202,918 + EX31_RS22255 0.69 -0.7
202,918 + EX31_RS22255 0.69 +0.4
202,918 + EX31_RS22255 0.69 +0.9
202,922 + EX31_RS22255 0.69 -0.9
202,922 + EX31_RS22255 0.69 +0.6
202,922 + EX31_RS22255 0.69 +0.9
202,955 + EX31_RS22255 0.70 -0.7
203,162 + EX31_RS22255 0.79 -0.1
203,162 + EX31_RS22255 0.79 -0.0
203,172 + EX31_RS22255 0.80 +0.7
203,172 + EX31_RS22255 0.80 -0.4
203,299 + EX31_RS22255 0.85 +0.4
203,351 + EX31_RS22255 0.87 -0.1
203,351 + EX31_RS22255 0.87 +0.8
203,622 + -0.4
203,663 + -0.1
203,663 + +0.1
203,664 - -0.2
203,733 + +0.2
203,733 + +0.6
203,734 - +1.4
203,795 + +0.5
203,795 + -0.5
203,795 + +0.1
203,795 + -1.8
203,795 + -0.3
203,795 + -0.1
203,795 + -0.1
203,796 - +0.6
203,796 - -0.6
203,797 + +0.5
203,850 + -0.1
203,863 + -0.1
203,863 + -0.1
203,863 + +0.2
203,864 - -1.0
203,864 - +0.9
203,873 + -0.0
203,873 + +1.4
203,873 + -0.1
203,873 + -0.3
203,873 + +0.1
203,874 - +0.7
203,941 + EX31_RS22260 0.26 -0.9
203,941 + EX31_RS22260 0.26 -0.7
203,941 + EX31_RS22260 0.26 -0.4
203,941 + EX31_RS22260 0.26 -1.6
203,942 - EX31_RS22260 0.27 +0.4
203,992 + EX31_RS22260 0.45 -0.1
203,992 + EX31_RS22260 0.45 -0.3
204,041 + EX31_RS22260 0.63 -0.4
204,042 - EX31_RS22260 0.63 -0.1
204,113 + EX31_RS22260 0.89 -2.0
204,113 + EX31_RS22260 0.89 -2.6
204,113 + EX31_RS22260 0.89 -0.9
204,114 - EX31_RS22260 0.89 -1.5
204,145 + +0.7
204,220 - -0.8
204,246 + +0.0
204,246 + -1.1
204,246 + -2.3
204,246 + +0.4
204,246 + +0.6
204,246 + -0.7
204,246 + -0.1
204,246 + +0.9
204,247 - -1.0
204,251 + +0.2
204,251 + -1.5
204,251 + -0.6
204,251 + -0.7
204,251 + +0.2
204,251 + -0.2
204,307 + +0.3
204,308 - +1.4
204,308 - -0.3
204,321 + -1.5
204,370 + +0.6
204,382 + +0.5
204,382 + +0.7
204,404 + +0.1
204,404 + +0.9
204,404 + +0.9
204,404 + +0.3
204,405 - +2.0
204,428 + -0.4
204,428 + +0.9
204,456 + -0.3
204,556 + EX31_RS22265 0.13 +0.6
204,556 + EX31_RS22265 0.13 -1.7
204,556 + EX31_RS22265 0.13 -1.2
204,618 - EX31_RS22265 0.16 -0.3
204,715 + EX31_RS22265 0.22 +0.2
204,715 + EX31_RS22265 0.22 +0.1
204,715 + EX31_RS22265 0.22 -0.3
204,715 + EX31_RS22265 0.22 -1.2
204,719 + EX31_RS22265 0.22 +1.0
204,720 - EX31_RS22265 0.22 +0.1
204,746 + EX31_RS22265 0.23 -0.2
204,746 + EX31_RS22265 0.23 -0.9
204,746 + EX31_RS22265 0.23 +0.5
204,786 + EX31_RS22265 0.25 -0.3
204,786 + EX31_RS22265 0.25 +0.7
204,786 + EX31_RS22265 0.25 -1.2
204,847 + EX31_RS22265 0.29 -1.5
204,855 + EX31_RS22265 0.29 -0.5
204,856 - EX31_RS22265 0.29 +0.9
204,922 + EX31_RS22265 0.33 -0.3
204,959 + EX31_RS22265 0.35 +0.1
204,959 + EX31_RS22265 0.35 +0.3
205,011 - EX31_RS22265 0.37 +0.6
205,076 + EX31_RS22265 0.41 +0.7
205,079 + EX31_RS22265 0.41 -1.8
205,079 + EX31_RS22265 0.41 +0.5
205,079 + EX31_RS22265 0.41 -0.5
205,090 + EX31_RS22265 0.42 +0.5
205,124 + EX31_RS22265 0.43 +0.5

Or see this region's nucleotide sequence