Strain Fitness in Rahnella sp. WP5 around EX31_RS21475

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21470 and EX31_RS21475 are separated by 311 nucleotidesEX31_RS21475 and EX31_RS21480 are separated by 270 nucleotides EX31_RS21470: EX31_RS21470 - phosphoglycerate dehydrogenase, at 36,949 to 38,187 _RS21470 EX31_RS21475: EX31_RS21475 - acid resistance repetitive basic protein Asr, at 38,499 to 38,849 _RS21475 EX31_RS21480: EX31_RS21480 - 5-formyltetrahydrofolate cyclo-ligase, at 39,120 to 39,716 _RS21480 Position (kb) 38 39Strain fitness (log2 ratio) -2 -1 0 1at 37.555 kb on - strand, within EX31_RS21470at 37.765 kb on - strand, within EX31_RS21470at 37.808 kb on + strand, within EX31_RS21470at 37.808 kb on + strand, within EX31_RS21470at 37.808 kb on + strand, within EX31_RS21470at 37.808 kb on + strand, within EX31_RS21470at 37.808 kb on + strand, within EX31_RS21470at 37.808 kb on + strand, within EX31_RS21470at 37.808 kb on + strand, within EX31_RS21470at 37.808 kb on + strand, within EX31_RS21470at 37.808 kb on + strand, within EX31_RS21470at 37.808 kb on + strand, within EX31_RS21470at 37.809 kb on - strand, within EX31_RS21470at 37.809 kb on - strand, within EX31_RS21470at 37.809 kb on - strand, within EX31_RS21470at 37.809 kb on - strand, within EX31_RS21470at 37.824 kb on + strand, within EX31_RS21470at 37.891 kb on + strand, within EX31_RS21470at 37.908 kb on + strand, within EX31_RS21470at 37.908 kb on + strand, within EX31_RS21470at 37.908 kb on + strand, within EX31_RS21470at 37.908 kb on + strand, within EX31_RS21470at 37.908 kb on + strand, within EX31_RS21470at 37.909 kb on - strand, within EX31_RS21470at 37.909 kb on - strand, within EX31_RS21470at 37.909 kb on - strand, within EX31_RS21470at 37.980 kb on + strand, within EX31_RS21470at 38.059 kb on + strand, within EX31_RS21470at 38.060 kb on - strand, within EX31_RS21470at 38.086 kb on + strandat 38.086 kb on + strandat 38.086 kb on + strandat 38.086 kb on + strandat 38.087 kb on - strandat 38.119 kb on - strandat 38.188 kb on + strandat 38.188 kb on + strandat 38.188 kb on + strandat 38.188 kb on + strandat 38.212 kb on + strandat 38.212 kb on + strandat 38.212 kb on + strandat 38.212 kb on + strandat 38.212 kb on + strandat 38.212 kb on + strandat 38.242 kb on + strandat 38.242 kb on + strandat 38.258 kb on + strandat 38.280 kb on + strandat 38.280 kb on + strandat 38.280 kb on + strandat 38.280 kb on + strandat 38.281 kb on - strandat 38.307 kb on - strandat 38.391 kb on - strandat 38.456 kb on + strandat 38.456 kb on + strandat 38.457 kb on - strandat 38.457 kb on - strandat 38.490 kb on - strandat 38.500 kb on + strandat 38.500 kb on + strandat 38.500 kb on + strandat 38.500 kb on + strandat 38.500 kb on + strandat 38.500 kb on + strandat 38.501 kb on - strandat 38.501 kb on - strandat 38.501 kb on - strandat 38.501 kb on - strandat 38.537 kb on + strand, within EX31_RS21475at 38.537 kb on + strand, within EX31_RS21475at 38.538 kb on - strand, within EX31_RS21475at 38.714 kb on + strand, within EX31_RS21475at 38.714 kb on + strand, within EX31_RS21475at 38.714 kb on + strand, within EX31_RS21475at 38.714 kb on + strand, within EX31_RS21475at 38.715 kb on - strand, within EX31_RS21475at 38.715 kb on - strand, within EX31_RS21475at 38.754 kb on - strand, within EX31_RS21475at 38.835 kb on + strandat 38.835 kb on + strandat 38.835 kb on + strandat 38.835 kb on + strandat 38.835 kb on + strandat 38.838 kb on + strandat 38.910 kb on + strandat 38.911 kb on - strandat 38.913 kb on + strandat 38.914 kb on - strandat 38.914 kb on - strandat 38.914 kb on - strandat 38.969 kb on + strandat 38.988 kb on + strandat 39.106 kb on + strandat 39.107 kb on - strandat 39.107 kb on - strandat 39.107 kb on - strandat 39.107 kb on - strandat 39.109 kb on - strandat 39.160 kb on - strandat 39.160 kb on - strandat 39.187 kb on - strand, within EX31_RS21480at 39.268 kb on + strand, within EX31_RS21480at 39.269 kb on - strand, within EX31_RS21480at 39.288 kb on + strand, within EX31_RS21480at 39.288 kb on + strand, within EX31_RS21480at 39.288 kb on + strand, within EX31_RS21480at 39.289 kb on - strand, within EX31_RS21480at 39.289 kb on - strand, within EX31_RS21480at 39.425 kb on + strand, within EX31_RS21480at 39.425 kb on + strand, within EX31_RS21480at 39.425 kb on + strand, within EX31_RS21480at 39.426 kb on - strand, within EX31_RS21480at 39.426 kb on - strand, within EX31_RS21480at 39.428 kb on - strand, within EX31_RS21480at 39.647 kb on + strand, within EX31_RS21480at 39.647 kb on + strand, within EX31_RS21480at 39.648 kb on - strand, within EX31_RS21480at 39.664 kb on - strandat 39.710 kb on - strandat 39.710 kb on - strandat 39.716 kb on + strandat 39.716 kb on + strandat 39.716 kb on + strandat 39.717 kb on - strandat 39.717 kb on - strandat 39.717 kb on - strandat 39.717 kb on - strandat 39.717 kb on - strandat 39.717 kb on - strandat 39.720 kb on + strandat 39.720 kb on + strandat 39.720 kb on + strandat 39.720 kb on + strandat 39.720 kb on + strandat 39.720 kb on + strandat 39.721 kb on - strandat 39.721 kb on - strandat 39.721 kb on - strandat 39.721 kb on - strandat 39.721 kb on - strandat 39.721 kb on - strandat 39.721 kb on - strandat 39.721 kb on - strandat 39.721 kb on - strandat 39.721 kb on - strandat 39.721 kb on - strandat 39.742 kb on - strandat 39.742 kb on - strandat 39.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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37,555 - EX31_RS21470 0.49 +0.6
37,765 - EX31_RS21470 0.66 -0.1
37,808 + EX31_RS21470 0.69 +0.1
37,808 + EX31_RS21470 0.69 -0.8
37,808 + EX31_RS21470 0.69 -0.0
37,808 + EX31_RS21470 0.69 +0.2
37,808 + EX31_RS21470 0.69 -1.7
37,808 + EX31_RS21470 0.69 -1.8
37,808 + EX31_RS21470 0.69 -1.0
37,808 + EX31_RS21470 0.69 +0.7
37,808 + EX31_RS21470 0.69 -0.5
37,808 + EX31_RS21470 0.69 +0.3
37,809 - EX31_RS21470 0.69 +0.3
37,809 - EX31_RS21470 0.69 +0.4
37,809 - EX31_RS21470 0.69 -0.4
37,809 - EX31_RS21470 0.69 -0.7
37,824 + EX31_RS21470 0.71 -1.6
37,891 + EX31_RS21470 0.76 -0.4
37,908 + EX31_RS21470 0.77 -1.0
37,908 + EX31_RS21470 0.77 -0.3
37,908 + EX31_RS21470 0.77 +0.1
37,908 + EX31_RS21470 0.77 -1.4
37,908 + EX31_RS21470 0.77 +0.6
37,909 - EX31_RS21470 0.77 -0.4
37,909 - EX31_RS21470 0.77 -0.1
37,909 - EX31_RS21470 0.77 -1.1
37,980 + EX31_RS21470 0.83 +0.2
38,059 + EX31_RS21470 0.90 +0.0
38,060 - EX31_RS21470 0.90 -1.1
38,086 + -0.6
38,086 + +0.2
38,086 + -0.7
38,086 + -0.2
38,087 - -1.7
38,119 - -0.9
38,188 + +0.8
38,188 + -0.3
38,188 + -0.4
38,188 + -1.3
38,212 + +1.3
38,212 + +0.2
38,212 + +1.1
38,212 + -1.6
38,212 + -1.2
38,212 + +0.3
38,242 + +0.6
38,242 + -0.2
38,258 + -0.8
38,280 + -0.0
38,280 + +0.6
38,280 + -1.9
38,280 + -0.4
38,281 - -0.2
38,307 - -1.1
38,391 - -0.0
38,456 + +0.4
38,456 + -1.5
38,457 - +0.9
38,457 - +0.4
38,490 - +0.6
38,500 + -0.1
38,500 + -0.3
38,500 + +0.8
38,500 + +0.3
38,500 + +1.3
38,500 + +0.7
38,501 - +1.1
38,501 - +0.8
38,501 - -0.6
38,501 - -0.1
38,537 + EX31_RS21475 0.11 +0.5
38,537 + EX31_RS21475 0.11 -0.5
38,538 - EX31_RS21475 0.11 -0.9
38,714 + EX31_RS21475 0.61 +0.1
38,714 + EX31_RS21475 0.61 -1.1
38,714 + EX31_RS21475 0.61 -0.5
38,714 + EX31_RS21475 0.61 -1.1
38,715 - EX31_RS21475 0.62 -0.9
38,715 - EX31_RS21475 0.62 -1.2
38,754 - EX31_RS21475 0.73 +0.8
38,835 + -0.1
38,835 + +0.4
38,835 + -0.7
38,835 + -1.1
38,835 + -0.6
38,838 + +1.1
38,910 + -1.4
38,911 - +0.1
38,913 + -0.7
38,914 - +1.0
38,914 - +0.6
38,914 - +0.7
38,969 + -0.3
38,988 + +0.1
39,106 + -0.3
39,107 - +0.5
39,107 - +0.7
39,107 - +0.2
39,107 - -1.9
39,109 - +0.8
39,160 - -1.0
39,160 - -1.2
39,187 - EX31_RS21480 0.11 +0.1
39,268 + EX31_RS21480 0.25 -0.2
39,269 - EX31_RS21480 0.25 -0.1
39,288 + EX31_RS21480 0.28 +0.3
39,288 + EX31_RS21480 0.28 +0.6
39,288 + EX31_RS21480 0.28 +0.1
39,289 - EX31_RS21480 0.28 -1.2
39,289 - EX31_RS21480 0.28 -0.4
39,425 + EX31_RS21480 0.51 -1.7
39,425 + EX31_RS21480 0.51 +0.3
39,425 + EX31_RS21480 0.51 -0.3
39,426 - EX31_RS21480 0.51 +0.1
39,426 - EX31_RS21480 0.51 +0.4
39,428 - EX31_RS21480 0.52 -0.2
39,647 + EX31_RS21480 0.88 +0.2
39,647 + EX31_RS21480 0.88 +0.7
39,648 - EX31_RS21480 0.88 +1.7
39,664 - -1.0
39,710 - +0.4
39,710 - -1.3
39,716 + +0.3
39,716 + -1.7
39,716 + -0.4
39,717 - -0.0
39,717 - -0.1
39,717 - +0.3
39,717 - -0.1
39,717 - +0.2
39,717 - -0.1
39,720 + -0.5
39,720 + -0.4
39,720 + -0.4
39,720 + -1.7
39,720 + -0.1
39,720 + -0.8
39,721 - -0.1
39,721 - -0.1
39,721 - -0.1
39,721 - +0.2
39,721 - -0.0
39,721 - +1.2
39,721 - +0.2
39,721 - -0.1
39,721 - +0.6
39,721 - -0.1
39,721 - +0.2
39,742 - -0.6
39,742 - +0.3
39,831 - -0.2

Or see this region's nucleotide sequence