Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21470 and EX31_RS21475 are separated by 311 nucleotides EX31_RS21475 and EX31_RS21480 are separated by 270 nucleotides
EX31_RS21470: EX31_RS21470 - phosphoglycerate dehydrogenase, at 36,949 to 38,187
_RS21470
EX31_RS21475: EX31_RS21475 - acid resistance repetitive basic protein Asr, at 38,499 to 38,849
_RS21475
EX31_RS21480: EX31_RS21480 - 5-formyltetrahydrofolate cyclo-ligase, at 39,120 to 39,716
_RS21480
Position (kb) 38
39 Strain fitness (log2 ratio) -2
-1
0
1 at 37.555 kb on - strand, within EX31_RS21470 at 37.765 kb on - strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.809 kb on - strand, within EX31_RS21470 at 37.809 kb on - strand, within EX31_RS21470 at 37.809 kb on - strand, within EX31_RS21470 at 37.809 kb on - strand, within EX31_RS21470 at 37.824 kb on + strand, within EX31_RS21470 at 37.891 kb on + strand, within EX31_RS21470 at 37.908 kb on + strand, within EX31_RS21470 at 37.908 kb on + strand, within EX31_RS21470 at 37.908 kb on + strand, within EX31_RS21470 at 37.908 kb on + strand, within EX31_RS21470 at 37.908 kb on + strand, within EX31_RS21470 at 37.909 kb on - strand, within EX31_RS21470 at 37.909 kb on - strand, within EX31_RS21470 at 37.909 kb on - strand, within EX31_RS21470 at 37.980 kb on + strand, within EX31_RS21470 at 38.059 kb on + strand, within EX31_RS21470 at 38.060 kb on - strand, within EX31_RS21470 at 38.086 kb on + strand at 38.086 kb on + strand at 38.086 kb on + strand at 38.086 kb on + strand at 38.087 kb on - strand at 38.119 kb on - strand at 38.188 kb on + strand at 38.188 kb on + strand at 38.188 kb on + strand at 38.188 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.242 kb on + strand at 38.242 kb on + strand at 38.258 kb on + strand at 38.280 kb on + strand at 38.280 kb on + strand at 38.280 kb on + strand at 38.280 kb on + strand at 38.281 kb on - strand at 38.307 kb on - strand at 38.391 kb on - strand at 38.456 kb on + strand at 38.456 kb on + strand at 38.457 kb on - strand at 38.457 kb on - strand at 38.490 kb on - strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.501 kb on - strand at 38.501 kb on - strand at 38.501 kb on - strand at 38.501 kb on - strand at 38.537 kb on + strand, within EX31_RS21475 at 38.537 kb on + strand, within EX31_RS21475 at 38.538 kb on - strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.715 kb on - strand, within EX31_RS21475 at 38.715 kb on - strand, within EX31_RS21475 at 38.754 kb on - strand, within EX31_RS21475 at 38.835 kb on + strand at 38.835 kb on + strand at 38.835 kb on + strand at 38.835 kb on + strand at 38.835 kb on + strand at 38.838 kb on + strand at 38.910 kb on + strand at 38.911 kb on - strand at 38.913 kb on + strand at 38.914 kb on - strand at 38.914 kb on - strand at 38.914 kb on - strand at 38.969 kb on + strand at 38.988 kb on + strand at 39.106 kb on + strand at 39.107 kb on - strand at 39.107 kb on - strand at 39.107 kb on - strand at 39.107 kb on - strand at 39.109 kb on - strand at 39.160 kb on - strand at 39.160 kb on - strand at 39.187 kb on - strand, within EX31_RS21480 at 39.268 kb on + strand, within EX31_RS21480 at 39.269 kb on - strand, within EX31_RS21480 at 39.288 kb on + strand, within EX31_RS21480 at 39.288 kb on + strand, within EX31_RS21480 at 39.288 kb on + strand, within EX31_RS21480 at 39.289 kb on - strand, within EX31_RS21480 at 39.289 kb on - strand, within EX31_RS21480 at 39.425 kb on + strand, within EX31_RS21480 at 39.425 kb on + strand, within EX31_RS21480 at 39.425 kb on + strand, within EX31_RS21480 at 39.426 kb on - strand, within EX31_RS21480 at 39.426 kb on - strand, within EX31_RS21480 at 39.428 kb on - strand, within EX31_RS21480 at 39.647 kb on + strand, within EX31_RS21480 at 39.647 kb on + strand, within EX31_RS21480 at 39.648 kb on - strand, within EX31_RS21480 at 39.664 kb on - strand at 39.710 kb on - strand at 39.710 kb on - strand at 39.716 kb on + strand at 39.716 kb on + strand at 39.716 kb on + strand at 39.717 kb on - strand at 39.717 kb on - strand at 39.717 kb on - strand at 39.717 kb on - strand at 39.717 kb on - strand at 39.717 kb on - strand at 39.720 kb on + strand at 39.720 kb on + strand at 39.720 kb on + strand at 39.720 kb on + strand at 39.720 kb on + strand at 39.720 kb on + strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.721 kb on - strand at 39.742 kb on - strand at 39.742 kb on - strand at 39.831 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 37,555 - EX31_RS21470 0.49 +0.6 37,765 - EX31_RS21470 0.66 -0.1 37,808 + EX31_RS21470 0.69 +0.1 37,808 + EX31_RS21470 0.69 -0.8 37,808 + EX31_RS21470 0.69 -0.0 37,808 + EX31_RS21470 0.69 +0.2 37,808 + EX31_RS21470 0.69 -1.7 37,808 + EX31_RS21470 0.69 -1.8 37,808 + EX31_RS21470 0.69 -1.0 37,808 + EX31_RS21470 0.69 +0.7 37,808 + EX31_RS21470 0.69 -0.5 37,808 + EX31_RS21470 0.69 +0.3 37,809 - EX31_RS21470 0.69 +0.3 37,809 - EX31_RS21470 0.69 +0.4 37,809 - EX31_RS21470 0.69 -0.4 37,809 - EX31_RS21470 0.69 -0.7 37,824 + EX31_RS21470 0.71 -1.6 37,891 + EX31_RS21470 0.76 -0.4 37,908 + EX31_RS21470 0.77 -1.0 37,908 + EX31_RS21470 0.77 -0.3 37,908 + EX31_RS21470 0.77 +0.1 37,908 + EX31_RS21470 0.77 -1.4 37,908 + EX31_RS21470 0.77 +0.6 37,909 - EX31_RS21470 0.77 -0.4 37,909 - EX31_RS21470 0.77 -0.1 37,909 - EX31_RS21470 0.77 -1.1 37,980 + EX31_RS21470 0.83 +0.2 38,059 + EX31_RS21470 0.90 +0.0 38,060 - EX31_RS21470 0.90 -1.1 38,086 + -0.6 38,086 + +0.2 38,086 + -0.7 38,086 + -0.2 38,087 - -1.7 38,119 - -0.9 38,188 + +0.8 38,188 + -0.3 38,188 + -0.4 38,188 + -1.3 38,212 + +1.3 38,212 + +0.2 38,212 + +1.1 38,212 + -1.6 38,212 + -1.2 38,212 + +0.3 38,242 + +0.6 38,242 + -0.2 38,258 + -0.8 38,280 + -0.0 38,280 + +0.6 38,280 + -1.9 38,280 + -0.4 38,281 - -0.2 38,307 - -1.1 38,391 - -0.0 38,456 + +0.4 38,456 + -1.5 38,457 - +0.9 38,457 - +0.4 38,490 - +0.6 38,500 + -0.1 38,500 + -0.3 38,500 + +0.8 38,500 + +0.3 38,500 + +1.3 38,500 + +0.7 38,501 - +1.1 38,501 - +0.8 38,501 - -0.6 38,501 - -0.1 38,537 + EX31_RS21475 0.11 +0.5 38,537 + EX31_RS21475 0.11 -0.5 38,538 - EX31_RS21475 0.11 -0.9 38,714 + EX31_RS21475 0.61 +0.1 38,714 + EX31_RS21475 0.61 -1.1 38,714 + EX31_RS21475 0.61 -0.5 38,714 + EX31_RS21475 0.61 -1.1 38,715 - EX31_RS21475 0.62 -0.9 38,715 - EX31_RS21475 0.62 -1.2 38,754 - EX31_RS21475 0.73 +0.8 38,835 + -0.1 38,835 + +0.4 38,835 + -0.7 38,835 + -1.1 38,835 + -0.6 38,838 + +1.1 38,910 + -1.4 38,911 - +0.1 38,913 + -0.7 38,914 - +1.0 38,914 - +0.6 38,914 - +0.7 38,969 + -0.3 38,988 + +0.1 39,106 + -0.3 39,107 - +0.5 39,107 - +0.7 39,107 - +0.2 39,107 - -1.9 39,109 - +0.8 39,160 - -1.0 39,160 - -1.2 39,187 - EX31_RS21480 0.11 +0.1 39,268 + EX31_RS21480 0.25 -0.2 39,269 - EX31_RS21480 0.25 -0.1 39,288 + EX31_RS21480 0.28 +0.3 39,288 + EX31_RS21480 0.28 +0.6 39,288 + EX31_RS21480 0.28 +0.1 39,289 - EX31_RS21480 0.28 -1.2 39,289 - EX31_RS21480 0.28 -0.4 39,425 + EX31_RS21480 0.51 -1.7 39,425 + EX31_RS21480 0.51 +0.3 39,425 + EX31_RS21480 0.51 -0.3 39,426 - EX31_RS21480 0.51 +0.1 39,426 - EX31_RS21480 0.51 +0.4 39,428 - EX31_RS21480 0.52 -0.2 39,647 + EX31_RS21480 0.88 +0.2 39,647 + EX31_RS21480 0.88 +0.7 39,648 - EX31_RS21480 0.88 +1.7 39,664 - -1.0 39,710 - +0.4 39,710 - -1.3 39,716 + +0.3 39,716 + -1.7 39,716 + -0.4 39,717 - -0.0 39,717 - -0.1 39,717 - +0.3 39,717 - -0.1 39,717 - +0.2 39,717 - -0.1 39,720 + -0.5 39,720 + -0.4 39,720 + -0.4 39,720 + -1.7 39,720 + -0.1 39,720 + -0.8 39,721 - -0.1 39,721 - -0.1 39,721 - -0.1 39,721 - +0.2 39,721 - -0.0 39,721 - +1.2 39,721 - +0.2 39,721 - -0.1 39,721 - +0.6 39,721 - -0.1 39,721 - +0.2 39,742 - -0.6 39,742 - +0.3 39,831 - -0.2
Or see this region's nucleotide sequence