Strain Fitness in Rahnella sp. WP5 around EX31_RS20895

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS25605 and EX31_RS20885 are separated by 274 nucleotidesEX31_RS20885 and EX31_RS20890 overlap by 4 nucleotidesEX31_RS20890 and EX31_RS20895 are separated by 178 nucleotidesEX31_RS20895 and EX31_RS20900 are separated by 561 nucleotides EX31_RS25605: EX31_RS25605 - transposase, at 823,316 to 823,566 _RS25605 EX31_RS20885: EX31_RS20885 - conjugal transfer protein TraD, at 823,841 to 824,125 _RS20885 EX31_RS20890: EX31_RS20890 - hypothetical protein, at 824,122 to 824,379 _RS20890 EX31_RS20895: EX31_RS20895 - hypothetical protein, at 824,558 to 825,211 _RS20895 EX31_RS20900: EX31_RS20900 - MobA/MobL family protein, at 825,773 to 827,191 _RS20900 Position (kb) 824 825 826Strain fitness (log2 ratio) -2 -1 0 1at 823.592 kb on - strandat 823.592 kb on - strandat 823.634 kb on + strandat 823.645 kb on + strandat 823.646 kb on - strandat 823.648 kb on + strandat 823.794 kb on - strandat 823.794 kb on - strandat 823.842 kb on + strandat 823.842 kb on + strandat 823.842 kb on + strandat 823.843 kb on - strandat 823.875 kb on + strand, within EX31_RS20885at 823.875 kb on + strand, within EX31_RS20885at 823.875 kb on + strand, within EX31_RS20885at 823.876 kb on - strand, within EX31_RS20885at 823.876 kb on - strand, within EX31_RS20885at 823.931 kb on - strand, within EX31_RS20885at 823.934 kb on - strand, within EX31_RS20885at 823.934 kb on - strand, within EX31_RS20885at 823.965 kb on - strand, within EX31_RS20885at 823.968 kb on + strand, within EX31_RS20885at 823.969 kb on - strand, within EX31_RS20885at 823.972 kb on + strand, within EX31_RS20885at 823.973 kb on - strand, within EX31_RS20885at 823.973 kb on - strand, within EX31_RS20885at 824.074 kb on - strand, within EX31_RS20885at 824.235 kb on + strand, within EX31_RS20890at 824.236 kb on - strand, within EX31_RS20890at 824.320 kb on - strand, within EX31_RS20890at 824.423 kb on + strandat 824.438 kb on + strandat 824.524 kb on - strandat 824.592 kb on - strandat 824.611 kb on - strandat 824.611 kb on - strandat 824.725 kb on + strand, within EX31_RS20895at 824.903 kb on + strand, within EX31_RS20895at 824.903 kb on + strand, within EX31_RS20895at 824.904 kb on - strand, within EX31_RS20895at 825.102 kb on - strand, within EX31_RS20895at 825.226 kb on - strandat 825.286 kb on - strandat 825.289 kb on + strandat 825.411 kb on + strandat 825.415 kb on - strandat 825.485 kb on - strandat 825.485 kb on - strandat 825.504 kb on - strandat 825.516 kb on + strandat 825.590 kb on - strandat 825.635 kb on + strandat 825.637 kb on + strandat 825.637 kb on + strandat 825.637 kb on + strandat 825.638 kb on - strandat 825.638 kb on - strandat 825.710 kb on + strandat 825.711 kb on - strandat 825.714 kb on + strandat 825.715 kb on - strandat 825.715 kb on - strandat 825.737 kb on - strandat 825.747 kb on + strandat 825.846 kb on - strandat 825.865 kb on - strandat 825.890 kb on + strandat 825.931 kb on - strand, within EX31_RS20900at 825.934 kb on - strand, within EX31_RS20900at 825.934 kb on - strand, within EX31_RS20900at 825.956 kb on + strand, within EX31_RS20900at 825.956 kb on + strand, within EX31_RS20900at 825.956 kb on + strand, within EX31_RS20900at 825.957 kb on - strand, within EX31_RS20900at 825.958 kb on + strand, within EX31_RS20900at 825.959 kb on - strand, within EX31_RS20900at 826.043 kb on - strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.045 kb on - strand, within EX31_RS20900at 826.045 kb on - strand, within EX31_RS20900at 826.045 kb on - strand, within EX31_RS20900at 826.045 kb on - strand, within EX31_RS20900at 826.045 kb on - strand, within EX31_RS20900at 826.049 kb on - strand, within EX31_RS20900at 826.049 kb on - strand, within EX31_RS20900

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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823,592 - -1.0
823,592 - -0.2
823,634 + +1.0
823,645 + +0.6
823,646 - -0.2
823,648 + -1.3
823,794 - -1.2
823,794 - +1.1
823,842 + +0.0
823,842 + -0.1
823,842 + +0.7
823,843 - -0.3
823,875 + EX31_RS20885 0.12 +1.0
823,875 + EX31_RS20885 0.12 +0.4
823,875 + EX31_RS20885 0.12 -1.3
823,876 - EX31_RS20885 0.12 +0.4
823,876 - EX31_RS20885 0.12 +0.6
823,931 - EX31_RS20885 0.32 +0.1
823,934 - EX31_RS20885 0.33 -0.2
823,934 - EX31_RS20885 0.33 -0.3
823,965 - EX31_RS20885 0.44 +0.4
823,968 + EX31_RS20885 0.45 +1.1
823,969 - EX31_RS20885 0.45 -0.3
823,972 + EX31_RS20885 0.46 +0.6
823,973 - EX31_RS20885 0.46 -0.2
823,973 - EX31_RS20885 0.46 +0.1
824,074 - EX31_RS20885 0.82 +0.2
824,235 + EX31_RS20890 0.44 +0.3
824,236 - EX31_RS20890 0.44 -0.1
824,320 - EX31_RS20890 0.77 +0.1
824,423 + +1.0
824,438 + -1.2
824,524 - -1.5
824,592 - +0.4
824,611 - -0.9
824,611 - +0.3
824,725 + EX31_RS20895 0.26 -1.0
824,903 + EX31_RS20895 0.53 -0.1
824,903 + EX31_RS20895 0.53 -0.4
824,904 - EX31_RS20895 0.53 +0.4
825,102 - EX31_RS20895 0.83 -0.9
825,226 - +0.6
825,286 - -0.5
825,289 + -0.4
825,411 + +0.0
825,415 - +0.2
825,485 - +0.9
825,485 - +0.4
825,504 - -0.6
825,516 + +0.9
825,590 - -1.1
825,635 + +1.0
825,637 + -0.4
825,637 + +0.5
825,637 + +0.2
825,638 - -0.4
825,638 - -0.1
825,710 + +0.4
825,711 - +0.6
825,714 + +0.1
825,715 - +0.7
825,715 - -0.7
825,737 - -0.2
825,747 + -0.6
825,846 - -1.5
825,865 - -1.0
825,890 + +0.9
825,931 - EX31_RS20900 0.11 +0.9
825,934 - EX31_RS20900 0.11 -0.1
825,934 - EX31_RS20900 0.11 +0.4
825,956 + EX31_RS20900 0.13 -2.4
825,956 + EX31_RS20900 0.13 -0.8
825,956 + EX31_RS20900 0.13 -0.1
825,957 - EX31_RS20900 0.13 -0.5
825,958 + EX31_RS20900 0.13 +0.5
825,959 - EX31_RS20900 0.13 +0.5
826,043 - EX31_RS20900 0.19 -0.8
826,044 + EX31_RS20900 0.19 -1.2
826,044 + EX31_RS20900 0.19 -0.2
826,044 + EX31_RS20900 0.19 -0.3
826,044 + EX31_RS20900 0.19 -0.5
826,044 + EX31_RS20900 0.19 -0.4
826,044 + EX31_RS20900 0.19 -0.3
826,045 - EX31_RS20900 0.19 +0.1
826,045 - EX31_RS20900 0.19 +0.7
826,045 - EX31_RS20900 0.19 +0.4
826,045 - EX31_RS20900 0.19 -1.2
826,045 - EX31_RS20900 0.19 -0.1
826,049 - EX31_RS20900 0.19 +0.2
826,049 - EX31_RS20900 0.19 -0.4

Or see this region's nucleotide sequence