Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19145 and EX31_RS19150 are separated by 43 nucleotides EX31_RS19150 and EX31_RS19155 are separated by 675 nucleotides
EX31_RS19145: EX31_RS19145 - microcin C ABC transporter ATP-binding protein YejF, at 423,147 to 424,769
_RS19145
EX31_RS19150: EX31_RS19150 - hypothetical protein, at 424,813 to 425,157
_RS19150
EX31_RS19155: EX31_RS19155 - dehydrogenase, at 425,833 to 426,450
_RS19155
Position (kb) 424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 423.814 kb on + strand, within EX31_RS19145 at 423.815 kb on - strand, within EX31_RS19145 at 423.815 kb on - strand, within EX31_RS19145 at 423.838 kb on + strand, within EX31_RS19145 at 423.912 kb on + strand, within EX31_RS19145 at 423.913 kb on - strand, within EX31_RS19145 at 423.913 kb on - strand, within EX31_RS19145 at 423.913 kb on - strand, within EX31_RS19145 at 423.913 kb on - strand, within EX31_RS19145 at 423.913 kb on - strand, within EX31_RS19145 at 424.282 kb on + strand, within EX31_RS19145 at 424.454 kb on + strand, within EX31_RS19145 at 424.480 kb on + strand, within EX31_RS19145 at 424.511 kb on + strand, within EX31_RS19145 at 424.511 kb on + strand, within EX31_RS19145 at 424.511 kb on + strand, within EX31_RS19145 at 424.511 kb on + strand, within EX31_RS19145 at 424.511 kb on + strand, within EX31_RS19145 at 424.512 kb on - strand, within EX31_RS19145 at 424.512 kb on - strand, within EX31_RS19145 at 424.512 kb on - strand, within EX31_RS19145 at 424.512 kb on - strand, within EX31_RS19145 at 424.512 kb on - strand, within EX31_RS19145 at 424.512 kb on - strand, within EX31_RS19145 at 424.512 kb on - strand, within EX31_RS19145 at 424.567 kb on + strand, within EX31_RS19145 at 424.567 kb on + strand, within EX31_RS19145 at 424.567 kb on + strand, within EX31_RS19145 at 424.568 kb on - strand, within EX31_RS19145 at 424.590 kb on + strand, within EX31_RS19145 at 424.590 kb on + strand, within EX31_RS19145 at 424.591 kb on - strand, within EX31_RS19145 at 424.591 kb on - strand, within EX31_RS19145 at 424.591 kb on - strand, within EX31_RS19145 at 424.591 kb on - strand, within EX31_RS19145 at 424.598 kb on + strand, within EX31_RS19145 at 424.599 kb on - strand, within EX31_RS19145 at 424.612 kb on + strand at 424.612 kb on + strand at 424.613 kb on - strand at 424.716 kb on + strand at 424.716 kb on + strand at 424.716 kb on + strand at 424.717 kb on - strand at 424.717 kb on - strand at 424.717 kb on - strand at 424.717 kb on - strand at 424.717 kb on - strand at 424.719 kb on - strand at 424.730 kb on - strand at 424.824 kb on - strand at 424.824 kb on - strand at 424.956 kb on + strand, within EX31_RS19150 at 424.957 kb on - strand, within EX31_RS19150 at 424.964 kb on - strand, within EX31_RS19150 at 424.964 kb on - strand, within EX31_RS19150 at 424.964 kb on - strand, within EX31_RS19150 at 424.964 kb on - strand, within EX31_RS19150 at 425.043 kb on + strand, within EX31_RS19150 at 425.043 kb on + strand, within EX31_RS19150 at 425.044 kb on - strand, within EX31_RS19150 at 425.044 kb on - strand, within EX31_RS19150 at 425.056 kb on - strand, within EX31_RS19150 at 425.131 kb on + strand at 425.131 kb on + strand at 425.132 kb on - strand at 425.132 kb on - strand at 425.132 kb on - strand at 425.132 kb on - strand at 425.152 kb on - strand at 425.178 kb on - strand at 425.178 kb on - strand at 425.178 kb on - strand at 425.178 kb on - strand at 425.178 kb on - strand at 425.178 kb on - strand at 425.213 kb on - strand at 425.231 kb on + strand at 425.231 kb on + strand at 425.231 kb on + strand at 425.231 kb on + strand at 425.231 kb on + strand at 425.231 kb on + strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.232 kb on - strand at 425.296 kb on + strand at 425.300 kb on - strand at 425.300 kb on - strand at 425.350 kb on - strand at 425.399 kb on - strand at 425.476 kb on - strand at 425.611 kb on + strand at 425.612 kb on - strand at 425.612 kb on - strand at 425.629 kb on + strand at 425.629 kb on + strand at 425.629 kb on + strand at 425.630 kb on - strand at 425.639 kb on - strand at 425.682 kb on - strand at 425.696 kb on + strand at 425.696 kb on + strand at 425.698 kb on + strand at 425.698 kb on + strand at 425.698 kb on + strand at 425.698 kb on + strand at 425.699 kb on - strand at 425.699 kb on - strand at 425.705 kb on + strand at 425.705 kb on + strand at 425.705 kb on + strand at 425.705 kb on + strand at 425.706 kb on - strand at 425.706 kb on - strand at 425.706 kb on - strand at 425.706 kb on - strand at 425.706 kb on - strand at 425.706 kb on - strand at 425.707 kb on + strand at 425.707 kb on + strand at 425.708 kb on - strand at 425.708 kb on - strand at 425.708 kb on - strand at 425.708 kb on - strand at 425.760 kb on - strand at 425.768 kb on + strand at 425.769 kb on - strand at 425.773 kb on + strand at 425.774 kb on - strand at 425.938 kb on - strand, within EX31_RS19155 at 426.016 kb on + strand, within EX31_RS19155 at 426.131 kb on + strand, within EX31_RS19155
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 423,814 + EX31_RS19145 0.41 -0.2 423,815 - EX31_RS19145 0.41 +0.8 423,815 - EX31_RS19145 0.41 +0.5 423,838 + EX31_RS19145 0.43 -0.4 423,912 + EX31_RS19145 0.47 -0.5 423,913 - EX31_RS19145 0.47 +0.6 423,913 - EX31_RS19145 0.47 +0.3 423,913 - EX31_RS19145 0.47 +1.5 423,913 - EX31_RS19145 0.47 -0.5 423,913 - EX31_RS19145 0.47 -0.7 424,282 + EX31_RS19145 0.70 -0.0 424,454 + EX31_RS19145 0.81 -0.1 424,480 + EX31_RS19145 0.82 +0.2 424,511 + EX31_RS19145 0.84 -0.5 424,511 + EX31_RS19145 0.84 -0.3 424,511 + EX31_RS19145 0.84 +1.3 424,511 + EX31_RS19145 0.84 -0.1 424,511 + EX31_RS19145 0.84 +0.3 424,512 - EX31_RS19145 0.84 -0.1 424,512 - EX31_RS19145 0.84 -1.5 424,512 - EX31_RS19145 0.84 +1.0 424,512 - EX31_RS19145 0.84 -1.5 424,512 - EX31_RS19145 0.84 -0.1 424,512 - EX31_RS19145 0.84 +1.2 424,512 - EX31_RS19145 0.84 -0.0 424,567 + EX31_RS19145 0.87 -0.1 424,567 + EX31_RS19145 0.87 +1.0 424,567 + EX31_RS19145 0.87 +0.3 424,568 - EX31_RS19145 0.88 +0.6 424,590 + EX31_RS19145 0.89 -0.0 424,590 + EX31_RS19145 0.89 +1.1 424,591 - EX31_RS19145 0.89 +1.0 424,591 - EX31_RS19145 0.89 +0.3 424,591 - EX31_RS19145 0.89 -1.0 424,591 - EX31_RS19145 0.89 -1.1 424,598 + EX31_RS19145 0.89 -3.2 424,599 - EX31_RS19145 0.89 +0.1 424,612 + +1.7 424,612 + -0.6 424,613 - -1.4 424,716 + +2.2 424,716 + -0.3 424,716 + +0.3 424,717 - +0.1 424,717 - -0.1 424,717 - -0.8 424,717 - +0.5 424,717 - +0.4 424,719 - -0.2 424,730 - -0.7 424,824 - -0.4 424,824 - -0.7 424,956 + EX31_RS19150 0.41 -1.2 424,957 - EX31_RS19150 0.42 -0.4 424,964 - EX31_RS19150 0.44 -0.1 424,964 - EX31_RS19150 0.44 -0.4 424,964 - EX31_RS19150 0.44 -0.7 424,964 - EX31_RS19150 0.44 -0.0 425,043 + EX31_RS19150 0.67 -0.7 425,043 + EX31_RS19150 0.67 +0.4 425,044 - EX31_RS19150 0.67 -0.8 425,044 - EX31_RS19150 0.67 +0.3 425,056 - EX31_RS19150 0.70 -0.4 425,131 + +0.2 425,131 + +0.0 425,132 - -0.7 425,132 - -0.6 425,132 - -0.6 425,132 - -1.1 425,152 - +1.5 425,178 - -0.7 425,178 - -0.2 425,178 - +0.1 425,178 - +0.6 425,178 - -0.0 425,178 - -0.5 425,213 - +0.8 425,231 + +1.8 425,231 + -1.4 425,231 + +0.6 425,231 + -0.3 425,231 + -1.3 425,231 + +0.4 425,232 - +0.2 425,232 - -0.2 425,232 - +0.1 425,232 - +0.9 425,232 - -0.9 425,232 - +0.2 425,232 - -0.2 425,232 - -0.7 425,232 - -0.1 425,232 - -0.7 425,232 - -0.3 425,232 - -0.0 425,232 - +0.2 425,232 - -0.2 425,232 - -1.1 425,232 - +1.3 425,232 - +0.6 425,232 - +0.4 425,232 - -0.2 425,232 - -0.3 425,232 - -0.0 425,232 - -0.2 425,232 - +0.2 425,232 - -1.9 425,232 - +0.3 425,232 - +0.6 425,232 - -0.4 425,232 - +0.2 425,232 - +0.8 425,232 - -1.9 425,232 - +0.2 425,232 - +0.6 425,232 - +1.9 425,232 - -1.2 425,232 - -0.8 425,232 - +0.1 425,232 - -0.5 425,296 + +2.2 425,300 - -0.2 425,300 - -1.6 425,350 - +0.2 425,399 - -0.4 425,476 - -1.0 425,611 + +1.4 425,612 - -0.4 425,612 - -0.2 425,629 + -1.7 425,629 + -0.7 425,629 + +0.7 425,630 - -0.1 425,639 - -0.4 425,682 - -0.3 425,696 + +0.5 425,696 + -0.3 425,698 + -0.4 425,698 + -0.4 425,698 + -0.0 425,698 + -1.1 425,699 - -0.7 425,699 - -0.0 425,705 + -1.2 425,705 + -1.5 425,705 + -0.2 425,705 + -0.9 425,706 - -0.0 425,706 - +0.6 425,706 - -0.1 425,706 - +0.5 425,706 - +0.6 425,706 - -0.3 425,707 + -0.0 425,707 + -0.0 425,708 - +1.5 425,708 - +0.7 425,708 - -0.2 425,708 - -1.7 425,760 - -0.5 425,768 + -0.7 425,769 - -1.3 425,773 + +0.1 425,774 - -0.2 425,938 - EX31_RS19155 0.17 -1.7 426,016 + EX31_RS19155 0.30 +0.2 426,131 + EX31_RS19155 0.48 -1.6
Or see this region's nucleotide sequence