Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17860 and EX31_RS17865 are separated by 276 nucleotides EX31_RS17865 and EX31_RS17870 are separated by 200 nucleotides
EX31_RS17860: EX31_RS17860 - extracellular solute-binding protein, at 128,802 to 130,028
_RS17860
EX31_RS17865: EX31_RS17865 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 130,305 to 131,408
_RS17865
EX31_RS17870: EX31_RS17870 - D-2-hydroxyacid dehydrogenase family protein, at 131,609 to 132,568
_RS17870
Position (kb) 130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 129.352 kb on - strand, within EX31_RS17860 at 129.352 kb on - strand, within EX31_RS17860 at 129.380 kb on - strand, within EX31_RS17860 at 129.383 kb on + strand, within EX31_RS17860 at 129.384 kb on - strand, within EX31_RS17860 at 129.384 kb on - strand, within EX31_RS17860 at 129.384 kb on - strand, within EX31_RS17860 at 129.443 kb on + strand, within EX31_RS17860 at 129.459 kb on + strand, within EX31_RS17860 at 129.459 kb on + strand, within EX31_RS17860 at 129.460 kb on - strand, within EX31_RS17860 at 129.460 kb on - strand, within EX31_RS17860 at 129.461 kb on + strand, within EX31_RS17860 at 129.461 kb on + strand, within EX31_RS17860 at 129.462 kb on - strand, within EX31_RS17860 at 129.462 kb on - strand, within EX31_RS17860 at 129.462 kb on - strand, within EX31_RS17860 at 129.462 kb on - strand, within EX31_RS17860 at 129.463 kb on + strand, within EX31_RS17860 at 129.463 kb on + strand, within EX31_RS17860 at 129.463 kb on + strand, within EX31_RS17860 at 129.464 kb on - strand, within EX31_RS17860 at 129.464 kb on - strand, within EX31_RS17860 at 129.491 kb on - strand, within EX31_RS17860 at 129.497 kb on - strand, within EX31_RS17860 at 129.499 kb on + strand, within EX31_RS17860 at 129.499 kb on + strand, within EX31_RS17860 at 129.499 kb on + strand, within EX31_RS17860 at 129.499 kb on + strand, within EX31_RS17860 at 129.500 kb on - strand, within EX31_RS17860 at 129.500 kb on - strand, within EX31_RS17860 at 129.500 kb on - strand, within EX31_RS17860 at 129.500 kb on - strand, within EX31_RS17860 at 129.529 kb on + strand, within EX31_RS17860 at 129.529 kb on + strand, within EX31_RS17860 at 129.530 kb on - strand, within EX31_RS17860 at 129.530 kb on - strand, within EX31_RS17860 at 129.530 kb on - strand, within EX31_RS17860 at 129.530 kb on - strand, within EX31_RS17860 at 129.533 kb on + strand, within EX31_RS17860 at 129.565 kb on + strand, within EX31_RS17860 at 129.565 kb on + strand, within EX31_RS17860 at 129.565 kb on + strand, within EX31_RS17860 at 129.566 kb on - strand, within EX31_RS17860 at 129.566 kb on - strand, within EX31_RS17860 at 129.566 kb on - strand, within EX31_RS17860 at 129.568 kb on + strand, within EX31_RS17860 at 129.569 kb on - strand, within EX31_RS17860 at 129.601 kb on - strand, within EX31_RS17860 at 129.652 kb on + strand, within EX31_RS17860 at 129.653 kb on - strand, within EX31_RS17860 at 129.653 kb on - strand, within EX31_RS17860 at 129.653 kb on - strand, within EX31_RS17860 at 129.695 kb on + strand, within EX31_RS17860 at 129.801 kb on - strand, within EX31_RS17860 at 129.823 kb on - strand, within EX31_RS17860 at 129.929 kb on + strand at 129.945 kb on + strand at 129.945 kb on + strand at 129.945 kb on + strand at 129.945 kb on + strand at 129.945 kb on + strand at 129.946 kb on - strand at 129.946 kb on - strand at 129.946 kb on - strand at 129.946 kb on - strand at 129.946 kb on - strand at 129.946 kb on - strand at 129.988 kb on - strand at 130.122 kb on + strand at 130.122 kb on + strand at 130.123 kb on - strand at 130.260 kb on + strand at 130.261 kb on - strand at 130.262 kb on + strand at 130.263 kb on - strand at 130.322 kb on + strand at 130.322 kb on + strand at 130.373 kb on + strand at 130.373 kb on + strand at 130.466 kb on + strand, within EX31_RS17865 at 130.485 kb on + strand, within EX31_RS17865 at 130.485 kb on + strand, within EX31_RS17865 at 130.770 kb on - strand, within EX31_RS17865 at 130.770 kb on - strand, within EX31_RS17865 at 130.869 kb on + strand, within EX31_RS17865 at 130.869 kb on + strand, within EX31_RS17865 at 130.869 kb on + strand, within EX31_RS17865 at 130.870 kb on - strand, within EX31_RS17865 at 130.929 kb on + strand, within EX31_RS17865 at 130.968 kb on + strand, within EX31_RS17865 at 130.968 kb on + strand, within EX31_RS17865 at 130.968 kb on + strand, within EX31_RS17865 at 130.971 kb on + strand, within EX31_RS17865 at 130.971 kb on + strand, within EX31_RS17865 at 131.238 kb on + strand, within EX31_RS17865 at 131.238 kb on + strand, within EX31_RS17865 at 131.238 kb on + strand, within EX31_RS17865 at 131.239 kb on - strand, within EX31_RS17865 at 131.239 kb on - strand, within EX31_RS17865 at 131.310 kb on + strand at 131.340 kb on - strand at 131.353 kb on + strand at 131.353 kb on + strand at 131.406 kb on + strand at 131.406 kb on + strand at 131.407 kb on - strand at 131.407 kb on - strand at 131.485 kb on + strand at 131.500 kb on - strand at 131.571 kb on + strand at 131.571 kb on + strand at 131.571 kb on + strand at 131.571 kb on + strand at 131.572 kb on - strand at 131.573 kb on + strand at 131.573 kb on + strand at 131.574 kb on - strand at 131.574 kb on - strand at 131.574 kb on - strand at 131.716 kb on + strand, within EX31_RS17870 at 131.716 kb on + strand, within EX31_RS17870 at 131.716 kb on + strand, within EX31_RS17870 at 131.716 kb on + strand, within EX31_RS17870 at 131.716 kb on + strand, within EX31_RS17870 at 131.716 kb on + strand, within EX31_RS17870 at 131.717 kb on - strand, within EX31_RS17870 at 131.717 kb on - strand, within EX31_RS17870 at 131.717 kb on - strand, within EX31_RS17870 at 131.717 kb on - strand, within EX31_RS17870 at 131.774 kb on - strand, within EX31_RS17870 at 131.865 kb on + strand, within EX31_RS17870 at 131.865 kb on + strand, within EX31_RS17870 at 131.865 kb on + strand, within EX31_RS17870 at 131.865 kb on + strand, within EX31_RS17870 at 131.865 kb on + strand, within EX31_RS17870 at 131.866 kb on - strand, within EX31_RS17870 at 131.866 kb on - strand, within EX31_RS17870 at 132.098 kb on - strand, within EX31_RS17870 at 132.098 kb on - strand, within EX31_RS17870 at 132.123 kb on + strand, within EX31_RS17870 at 132.123 kb on + strand, within EX31_RS17870 at 132.123 kb on + strand, within EX31_RS17870 at 132.123 kb on + strand, within EX31_RS17870 at 132.123 kb on + strand, within EX31_RS17870 at 132.123 kb on + strand, within EX31_RS17870 at 132.123 kb on + strand, within EX31_RS17870 at 132.123 kb on + strand, within EX31_RS17870 at 132.124 kb on - strand, within EX31_RS17870 at 132.124 kb on - strand, within EX31_RS17870 at 132.201 kb on + strand, within EX31_RS17870 at 132.202 kb on - strand, within EX31_RS17870 at 132.310 kb on + strand, within EX31_RS17870 at 132.310 kb on + strand, within EX31_RS17870 at 132.313 kb on + strand, within EX31_RS17870 at 132.313 kb on + strand, within EX31_RS17870
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 129,352 - EX31_RS17860 0.45 +0.7 129,352 - EX31_RS17860 0.45 -0.4 129,380 - EX31_RS17860 0.47 +0.0 129,383 + EX31_RS17860 0.47 +0.5 129,384 - EX31_RS17860 0.47 +0.3 129,384 - EX31_RS17860 0.47 +0.2 129,384 - EX31_RS17860 0.47 +0.8 129,443 + EX31_RS17860 0.52 -0.8 129,459 + EX31_RS17860 0.54 +0.9 129,459 + EX31_RS17860 0.54 +0.1 129,460 - EX31_RS17860 0.54 -0.0 129,460 - EX31_RS17860 0.54 -1.4 129,461 + EX31_RS17860 0.54 -0.4 129,461 + EX31_RS17860 0.54 +0.6 129,462 - EX31_RS17860 0.54 -0.0 129,462 - EX31_RS17860 0.54 +0.1 129,462 - EX31_RS17860 0.54 -0.3 129,462 - EX31_RS17860 0.54 -0.3 129,463 + EX31_RS17860 0.54 +0.2 129,463 + EX31_RS17860 0.54 +0.8 129,463 + EX31_RS17860 0.54 -1.2 129,464 - EX31_RS17860 0.54 -0.4 129,464 - EX31_RS17860 0.54 +0.2 129,491 - EX31_RS17860 0.56 +0.6 129,497 - EX31_RS17860 0.57 -0.1 129,499 + EX31_RS17860 0.57 -0.6 129,499 + EX31_RS17860 0.57 +0.3 129,499 + EX31_RS17860 0.57 +0.1 129,499 + EX31_RS17860 0.57 -0.9 129,500 - EX31_RS17860 0.57 -1.1 129,500 - EX31_RS17860 0.57 +0.5 129,500 - EX31_RS17860 0.57 -0.3 129,500 - EX31_RS17860 0.57 -0.7 129,529 + EX31_RS17860 0.59 +0.9 129,529 + EX31_RS17860 0.59 -0.0 129,530 - EX31_RS17860 0.59 +1.2 129,530 - EX31_RS17860 0.59 -2.2 129,530 - EX31_RS17860 0.59 -0.1 129,530 - EX31_RS17860 0.59 -0.7 129,533 + EX31_RS17860 0.60 +1.5 129,565 + EX31_RS17860 0.62 -0.6 129,565 + EX31_RS17860 0.62 +1.0 129,565 + EX31_RS17860 0.62 +0.1 129,566 - EX31_RS17860 0.62 +0.4 129,566 - EX31_RS17860 0.62 -0.9 129,566 - EX31_RS17860 0.62 -0.0 129,568 + EX31_RS17860 0.62 -0.1 129,569 - EX31_RS17860 0.63 -0.1 129,601 - EX31_RS17860 0.65 +0.8 129,652 + EX31_RS17860 0.69 -2.8 129,653 - EX31_RS17860 0.69 +0.3 129,653 - EX31_RS17860 0.69 +1.0 129,653 - EX31_RS17860 0.69 +0.5 129,695 + EX31_RS17860 0.73 +0.8 129,801 - EX31_RS17860 0.81 +0.5 129,823 - EX31_RS17860 0.83 +0.8 129,929 + +0.6 129,945 + -0.1 129,945 + +1.4 129,945 + -0.1 129,945 + +0.0 129,945 + -1.2 129,946 - +0.4 129,946 - +0.2 129,946 - -0.9 129,946 - -0.3 129,946 - +1.0 129,946 - -0.9 129,988 - -0.1 130,122 + -0.5 130,122 + +1.4 130,123 - +0.6 130,260 + -2.2 130,261 - +0.8 130,262 + -1.2 130,263 - +0.4 130,322 + -0.2 130,322 + +0.3 130,373 + +0.1 130,373 + +0.1 130,466 + EX31_RS17865 0.15 -0.4 130,485 + EX31_RS17865 0.16 -2.3 130,485 + EX31_RS17865 0.16 -2.1 130,770 - EX31_RS17865 0.42 +2.2 130,770 - EX31_RS17865 0.42 -0.8 130,869 + EX31_RS17865 0.51 -0.7 130,869 + EX31_RS17865 0.51 -1.1 130,869 + EX31_RS17865 0.51 +0.4 130,870 - EX31_RS17865 0.51 -0.9 130,929 + EX31_RS17865 0.57 +0.1 130,968 + EX31_RS17865 0.60 +0.4 130,968 + EX31_RS17865 0.60 -0.7 130,968 + EX31_RS17865 0.60 -0.3 130,971 + EX31_RS17865 0.60 -0.4 130,971 + EX31_RS17865 0.60 -0.9 131,238 + EX31_RS17865 0.85 -1.1 131,238 + EX31_RS17865 0.85 -2.4 131,238 + EX31_RS17865 0.85 +0.1 131,239 - EX31_RS17865 0.85 +0.3 131,239 - EX31_RS17865 0.85 +0.2 131,310 + -1.8 131,340 - +0.2 131,353 + +0.8 131,353 + +0.0 131,406 + +0.7 131,406 + -0.8 131,407 - +1.4 131,407 - +1.1 131,485 + +0.5 131,500 - -0.8 131,571 + -2.0 131,571 + -0.0 131,571 + +0.7 131,571 + -1.1 131,572 - +0.1 131,573 + -0.7 131,573 + +0.6 131,574 - +0.1 131,574 - +0.6 131,574 - +0.1 131,716 + EX31_RS17870 0.11 +0.4 131,716 + EX31_RS17870 0.11 -0.1 131,716 + EX31_RS17870 0.11 -0.4 131,716 + EX31_RS17870 0.11 -0.0 131,716 + EX31_RS17870 0.11 -0.8 131,716 + EX31_RS17870 0.11 -1.3 131,717 - EX31_RS17870 0.11 -0.2 131,717 - EX31_RS17870 0.11 +0.1 131,717 - EX31_RS17870 0.11 -0.2 131,717 - EX31_RS17870 0.11 +0.8 131,774 - EX31_RS17870 0.17 +0.3 131,865 + EX31_RS17870 0.27 -0.6 131,865 + EX31_RS17870 0.27 -0.2 131,865 + EX31_RS17870 0.27 +0.3 131,865 + EX31_RS17870 0.27 -0.5 131,865 + EX31_RS17870 0.27 -0.8 131,866 - EX31_RS17870 0.27 -0.1 131,866 - EX31_RS17870 0.27 +0.9 132,098 - EX31_RS17870 0.51 +0.4 132,098 - EX31_RS17870 0.51 +1.7 132,123 + EX31_RS17870 0.54 +0.9 132,123 + EX31_RS17870 0.54 -0.4 132,123 + EX31_RS17870 0.54 +0.1 132,123 + EX31_RS17870 0.54 -0.8 132,123 + EX31_RS17870 0.54 +0.6 132,123 + EX31_RS17870 0.54 +0.0 132,123 + EX31_RS17870 0.54 +1.0 132,123 + EX31_RS17870 0.54 -2.1 132,124 - EX31_RS17870 0.54 +1.0 132,124 - EX31_RS17870 0.54 -1.1 132,201 + EX31_RS17870 0.62 +0.3 132,202 - EX31_RS17870 0.62 -0.2 132,310 + EX31_RS17870 0.73 -0.5 132,310 + EX31_RS17870 0.73 +0.1 132,313 + EX31_RS17870 0.73 -0.1 132,313 + EX31_RS17870 0.73 -0.1
Or see this region's nucleotide sequence