Strain Fitness in Rahnella sp. WP5 around EX31_RS17315

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17310 and EX31_RS17315 overlap by 4 nucleotidesEX31_RS17315 and EX31_RS17320 are separated by 217 nucleotides EX31_RS17310: EX31_RS17310 - putative C-S lyase, at 10,707 to 11,855 _RS17310 EX31_RS17315: EX31_RS17315 - VOC family protein, at 11,852 to 12,421 _RS17315 EX31_RS17320: EX31_RS17320 - arginine--tRNA ligase, at 12,639 to 14,372 _RS17320 Position (kb) 11 12 13Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 10.916 kb on - strand, within EX31_RS17310at 10.950 kb on - strand, within EX31_RS17310at 10.994 kb on - strand, within EX31_RS17310at 11.100 kb on - strand, within EX31_RS17310at 11.108 kb on + strand, within EX31_RS17310at 11.108 kb on + strand, within EX31_RS17310at 11.113 kb on + strand, within EX31_RS17310at 11.164 kb on + strand, within EX31_RS17310at 11.164 kb on + strand, within EX31_RS17310at 11.164 kb on + strand, within EX31_RS17310at 11.164 kb on + strand, within EX31_RS17310at 11.206 kb on - strand, within EX31_RS17310at 11.208 kb on - strand, within EX31_RS17310at 11.226 kb on + strand, within EX31_RS17310at 11.442 kb on - strand, within EX31_RS17310at 11.442 kb on - strand, within EX31_RS17310at 11.517 kb on + strand, within EX31_RS17310at 11.517 kb on + strand, within EX31_RS17310at 11.518 kb on - strand, within EX31_RS17310at 11.562 kb on - strand, within EX31_RS17310at 11.577 kb on + strand, within EX31_RS17310at 11.578 kb on - strand, within EX31_RS17310at 11.621 kb on + strand, within EX31_RS17310at 11.637 kb on - strand, within EX31_RS17310at 11.637 kb on - strand, within EX31_RS17310at 11.658 kb on + strand, within EX31_RS17310at 11.658 kb on + strand, within EX31_RS17310at 11.658 kb on + strand, within EX31_RS17310at 11.658 kb on + strand, within EX31_RS17310at 11.659 kb on - strand, within EX31_RS17310at 11.659 kb on - strand, within EX31_RS17310at 11.659 kb on - strand, within EX31_RS17310at 11.659 kb on - strand, within EX31_RS17310at 11.659 kb on - strand, within EX31_RS17310at 11.659 kb on - strand, within EX31_RS17310at 11.659 kb on - strand, within EX31_RS17310at 11.659 kb on - strand, within EX31_RS17310at 11.766 kb on + strandat 11.767 kb on - strandat 11.767 kb on - strandat 11.767 kb on - strandat 11.774 kb on + strandat 11.992 kb on + strand, within EX31_RS17315at 12.043 kb on + strand, within EX31_RS17315at 12.043 kb on + strand, within EX31_RS17315at 12.044 kb on - strand, within EX31_RS17315at 12.044 kb on - strand, within EX31_RS17315at 12.044 kb on - strand, within EX31_RS17315at 12.044 kb on - strand, within EX31_RS17315at 12.044 kb on - strand, within EX31_RS17315at 12.045 kb on + strand, within EX31_RS17315at 12.046 kb on - strand, within EX31_RS17315at 12.047 kb on + strand, within EX31_RS17315at 12.048 kb on - strand, within EX31_RS17315at 12.048 kb on - strand, within EX31_RS17315at 12.048 kb on - strand, within EX31_RS17315at 12.048 kb on - strand, within EX31_RS17315at 12.048 kb on - strand, within EX31_RS17315at 12.048 kb on - strand, within EX31_RS17315at 12.048 kb on - strand, within EX31_RS17315at 12.048 kb on - strand, within EX31_RS17315at 12.048 kb on - strand, within EX31_RS17315at 12.048 kb on - strand, within EX31_RS17315at 12.082 kb on + strand, within EX31_RS17315at 12.083 kb on - strand, within EX31_RS17315at 12.083 kb on - strand, within EX31_RS17315at 12.083 kb on - strand, within EX31_RS17315at 12.083 kb on - strand, within EX31_RS17315at 12.106 kb on - strand, within EX31_RS17315at 12.129 kb on - strand, within EX31_RS17315at 12.129 kb on - strand, within EX31_RS17315at 12.129 kb on - strand, within EX31_RS17315at 12.129 kb on - strand, within EX31_RS17315at 12.129 kb on - strand, within EX31_RS17315at 12.295 kb on + strand, within EX31_RS17315at 12.296 kb on - strand, within EX31_RS17315at 12.296 kb on - strand, within EX31_RS17315at 12.296 kb on - strand, within EX31_RS17315at 12.296 kb on - strand, within EX31_RS17315at 12.323 kb on - strand, within EX31_RS17315at 12.353 kb on + strand, within EX31_RS17315at 12.354 kb on - strand, within EX31_RS17315at 12.424 kb on + strandat 12.424 kb on + strandat 12.425 kb on - strandat 12.464 kb on + strandat 12.537 kb on - strandat 12.537 kb on - strandat 12.553 kb on + strandat 12.554 kb on - strandat 12.554 kb on - strandat 12.554 kb on - strandat 12.556 kb on + strandat 12.556 kb on + strandat 12.556 kb on + strandat 12.556 kb on + strandat 12.556 kb on + strandat 12.556 kb on + strandat 12.561 kb on + strandat 12.563 kb on + strandat 12.622 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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10,916 - EX31_RS17310 0.18 +0.0
10,950 - EX31_RS17310 0.21 -1.7
10,994 - EX31_RS17310 0.25 +1.2
11,100 - EX31_RS17310 0.34 +0.4
11,108 + EX31_RS17310 0.35 +0.2
11,108 + EX31_RS17310 0.35 -0.8
11,113 + EX31_RS17310 0.35 +2.3
11,164 + EX31_RS17310 0.40 -0.8
11,164 + EX31_RS17310 0.40 -1.0
11,164 + EX31_RS17310 0.40 -0.8
11,164 + EX31_RS17310 0.40 -0.3
11,206 - EX31_RS17310 0.43 -0.3
11,208 - EX31_RS17310 0.44 +0.2
11,226 + EX31_RS17310 0.45 -0.4
11,442 - EX31_RS17310 0.64 -2.9
11,442 - EX31_RS17310 0.64 +0.1
11,517 + EX31_RS17310 0.70 -1.3
11,517 + EX31_RS17310 0.70 +0.0
11,518 - EX31_RS17310 0.71 +0.4
11,562 - EX31_RS17310 0.74 +0.2
11,577 + EX31_RS17310 0.76 +0.4
11,578 - EX31_RS17310 0.76 -0.5
11,621 + EX31_RS17310 0.80 -0.5
11,637 - EX31_RS17310 0.81 +1.4
11,637 - EX31_RS17310 0.81 +0.7
11,658 + EX31_RS17310 0.83 +0.3
11,658 + EX31_RS17310 0.83 -0.6
11,658 + EX31_RS17310 0.83 -0.6
11,658 + EX31_RS17310 0.83 -0.0
11,659 - EX31_RS17310 0.83 -0.3
11,659 - EX31_RS17310 0.83 -0.4
11,659 - EX31_RS17310 0.83 -0.8
11,659 - EX31_RS17310 0.83 +0.9
11,659 - EX31_RS17310 0.83 +0.5
11,659 - EX31_RS17310 0.83 -1.5
11,659 - EX31_RS17310 0.83 +1.0
11,659 - EX31_RS17310 0.83 +0.5
11,766 + -0.2
11,767 - -0.2
11,767 - -0.2
11,767 - -0.7
11,774 + -0.3
11,992 + EX31_RS17315 0.25 +0.3
12,043 + EX31_RS17315 0.34 -0.5
12,043 + EX31_RS17315 0.34 +1.0
12,044 - EX31_RS17315 0.34 +0.3
12,044 - EX31_RS17315 0.34 -0.5
12,044 - EX31_RS17315 0.34 +0.5
12,044 - EX31_RS17315 0.34 +0.3
12,044 - EX31_RS17315 0.34 -0.2
12,045 + EX31_RS17315 0.34 +1.6
12,046 - EX31_RS17315 0.34 -0.1
12,047 + EX31_RS17315 0.34 -0.1
12,048 - EX31_RS17315 0.34 -0.9
12,048 - EX31_RS17315 0.34 +0.1
12,048 - EX31_RS17315 0.34 +0.4
12,048 - EX31_RS17315 0.34 +0.6
12,048 - EX31_RS17315 0.34 +0.8
12,048 - EX31_RS17315 0.34 +0.5
12,048 - EX31_RS17315 0.34 +1.2
12,048 - EX31_RS17315 0.34 -0.0
12,048 - EX31_RS17315 0.34 +0.3
12,048 - EX31_RS17315 0.34 +0.4
12,082 + EX31_RS17315 0.40 -0.9
12,083 - EX31_RS17315 0.41 +0.1
12,083 - EX31_RS17315 0.41 +0.1
12,083 - EX31_RS17315 0.41 +0.9
12,083 - EX31_RS17315 0.41 +0.8
12,106 - EX31_RS17315 0.45 -0.1
12,129 - EX31_RS17315 0.49 -0.6
12,129 - EX31_RS17315 0.49 +0.6
12,129 - EX31_RS17315 0.49 -0.3
12,129 - EX31_RS17315 0.49 -0.8
12,129 - EX31_RS17315 0.49 -1.1
12,295 + EX31_RS17315 0.78 +0.6
12,296 - EX31_RS17315 0.78 -1.2
12,296 - EX31_RS17315 0.78 -0.4
12,296 - EX31_RS17315 0.78 +0.4
12,296 - EX31_RS17315 0.78 +0.6
12,323 - EX31_RS17315 0.83 +0.9
12,353 + EX31_RS17315 0.88 +0.0
12,354 - EX31_RS17315 0.88 +0.3
12,424 + +1.3
12,424 + +0.1
12,425 - +1.0
12,464 + +1.0
12,537 - -2.0
12,537 - +0.2
12,553 + +0.1
12,554 - +0.2
12,554 - -0.6
12,554 - -0.0
12,556 + -1.0
12,556 + +0.6
12,556 + +0.1
12,556 + +1.1
12,556 + -0.1
12,556 + +0.2
12,561 + +1.0
12,563 + +0.5
12,622 + +1.3

Or see this region's nucleotide sequence