Strain Fitness in Rahnella sp. WP5 around EX31_RS17295

Experiment: NL-CCM; vial

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS17290 and EX31_RS17295 are separated by 171 nucleotidesEX31_RS17295 and EX31_RS17300 are separated by 309 nucleotidesEX31_RS17300 and EX31_RS17305 are separated by 168 nucleotides EX31_RS17290: EX31_RS17290 - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 7,507 to 8,478 _RS17290 EX31_RS17295: EX31_RS17295 - hypothetical protein, at 8,650 to 8,853 _RS17295 EX31_RS17300: EX31_RS17300 - hypothetical protein, at 9,163 to 9,666 _RS17300 EX31_RS17305: EX31_RS17305 - copper homeostasis protein CutC, at 9,835 to 10,593 _RS17305 Position (kb) 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 7.758 kb on + strand, within EX31_RS17290at 7.761 kb on + strand, within EX31_RS17290at 7.761 kb on + strand, within EX31_RS17290at 7.761 kb on + strand, within EX31_RS17290at 7.762 kb on - strand, within EX31_RS17290at 7.886 kb on + strand, within EX31_RS17290at 8.001 kb on + strand, within EX31_RS17290at 8.123 kb on + strand, within EX31_RS17290at 8.124 kb on - strand, within EX31_RS17290at 8.124 kb on - strand, within EX31_RS17290at 8.199 kb on + strand, within EX31_RS17290at 8.250 kb on + strand, within EX31_RS17290at 8.250 kb on + strand, within EX31_RS17290at 8.250 kb on + strand, within EX31_RS17290at 8.251 kb on - strand, within EX31_RS17290at 8.254 kb on + strand, within EX31_RS17290at 8.254 kb on + strand, within EX31_RS17290at 8.319 kb on + strand, within EX31_RS17290at 8.424 kb on + strandat 8.424 kb on + strandat 8.477 kb on - strandat 8.537 kb on - strandat 8.565 kb on - strandat 8.577 kb on - strandat 8.649 kb on + strandat 8.677 kb on - strand, within EX31_RS17295at 8.746 kb on + strand, within EX31_RS17295at 8.747 kb on - strand, within EX31_RS17295at 8.747 kb on - strand, within EX31_RS17295at 8.750 kb on - strand, within EX31_RS17295at 8.750 kb on - strand, within EX31_RS17295at 8.811 kb on + strand, within EX31_RS17295at 8.812 kb on - strand, within EX31_RS17295at 8.903 kb on + strandat 8.903 kb on + strandat 8.904 kb on - strandat 8.905 kb on + strandat 8.906 kb on - strandat 8.937 kb on + strandat 8.963 kb on - strandat 9.241 kb on - strand, within EX31_RS17300at 9.247 kb on - strand, within EX31_RS17300at 9.247 kb on - strand, within EX31_RS17300at 9.315 kb on - strand, within EX31_RS17300at 9.323 kb on + strand, within EX31_RS17300at 9.323 kb on + strand, within EX31_RS17300at 9.323 kb on + strand, within EX31_RS17300at 9.324 kb on - strand, within EX31_RS17300at 9.324 kb on - strand, within EX31_RS17300at 9.324 kb on - strand, within EX31_RS17300at 9.324 kb on - strand, within EX31_RS17300at 9.441 kb on + strand, within EX31_RS17300at 9.464 kb on + strand, within EX31_RS17300at 9.465 kb on - strand, within EX31_RS17300at 9.465 kb on - strand, within EX31_RS17300at 9.465 kb on - strand, within EX31_RS17300at 9.465 kb on - strand, within EX31_RS17300at 9.617 kb on - strandat 9.628 kb on - strandat 9.628 kb on - strandat 9.719 kb on + strandat 9.779 kb on + strandat 9.834 kb on - strandat 9.834 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
remove
7,758 + EX31_RS17290 0.26 +1.3
7,761 + EX31_RS17290 0.26 +1.0
7,761 + EX31_RS17290 0.26 +1.9
7,761 + EX31_RS17290 0.26 -0.2
7,762 - EX31_RS17290 0.26 -2.1
7,886 + EX31_RS17290 0.39 -2.3
8,001 + EX31_RS17290 0.51 -1.6
8,123 + EX31_RS17290 0.63 +0.2
8,124 - EX31_RS17290 0.63 +0.2
8,124 - EX31_RS17290 0.63 -0.8
8,199 + EX31_RS17290 0.71 -1.1
8,250 + EX31_RS17290 0.76 +0.0
8,250 + EX31_RS17290 0.76 +0.3
8,250 + EX31_RS17290 0.76 +0.3
8,251 - EX31_RS17290 0.77 -1.1
8,254 + EX31_RS17290 0.77 +2.2
8,254 + EX31_RS17290 0.77 +0.5
8,319 + EX31_RS17290 0.84 +0.8
8,424 + +0.9
8,424 + -1.2
8,477 - -0.1
8,537 - +0.1
8,565 - -0.8
8,577 - +0.4
8,649 + -0.2
8,677 - EX31_RS17295 0.13 -1.4
8,746 + EX31_RS17295 0.47 -0.7
8,747 - EX31_RS17295 0.48 +0.8
8,747 - EX31_RS17295 0.48 +1.3
8,750 - EX31_RS17295 0.49 -0.3
8,750 - EX31_RS17295 0.49 +0.6
8,811 + EX31_RS17295 0.79 -0.1
8,812 - EX31_RS17295 0.79 -1.5
8,903 + +0.8
8,903 + -0.7
8,904 - +1.1
8,905 + +0.8
8,906 - +0.0
8,937 + +1.1
8,963 - -1.5
9,241 - EX31_RS17300 0.15 +1.3
9,247 - EX31_RS17300 0.17 -0.1
9,247 - EX31_RS17300 0.17 +1.3
9,315 - EX31_RS17300 0.30 +0.1
9,323 + EX31_RS17300 0.32 +1.8
9,323 + EX31_RS17300 0.32 +0.3
9,323 + EX31_RS17300 0.32 +1.1
9,324 - EX31_RS17300 0.32 +0.2
9,324 - EX31_RS17300 0.32 -1.2
9,324 - EX31_RS17300 0.32 -1.0
9,324 - EX31_RS17300 0.32 +0.1
9,441 + EX31_RS17300 0.55 -2.3
9,464 + EX31_RS17300 0.60 -2.0
9,465 - EX31_RS17300 0.60 +0.5
9,465 - EX31_RS17300 0.60 +0.1
9,465 - EX31_RS17300 0.60 +0.4
9,465 - EX31_RS17300 0.60 +0.4
9,617 - +0.0
9,628 - -0.3
9,628 - -0.5
9,719 + -1.4
9,779 + +0.7
9,834 - -0.3
9,834 - -0.3

Or see this region's nucleotide sequence