Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17255 and EX31_RS17260 are separated by 10 nucleotides EX31_RS17260 and EX31_RS17265 are separated by 144 nucleotides EX31_RS17265 and EX31_RS24995 overlap by 4 nucleotides EX31_RS24995 and EX31_RS25525 are separated by 485 nucleotides
EX31_RS17255: EX31_RS17255 - hypothetical protein, at 2,590 to 3,033
_RS17255
EX31_RS17260: EX31_RS17260 - Hcp family type VI secretion system effector, at 3,044 to 3,529
_RS17260
EX31_RS17265: EX31_RS17265 - hypothetical protein, at 3,674 to 4,102
_RS17265
EX31_RS24995: EX31_RS24995 - hypothetical protein, at 4,099 to 4,596
_RS24995
EX31_RS25525: EX31_RS25525 - isochorismatase family protein, at 5,082 to 5,222
_RS25525
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2.674 kb on - strand, within EX31_RS17255 at 2.703 kb on + strand, within EX31_RS17255 at 2.704 kb on - strand, within EX31_RS17255 at 2.704 kb on - strand, within EX31_RS17255 at 2.732 kb on + strand, within EX31_RS17255 at 2.732 kb on + strand, within EX31_RS17255 at 2.732 kb on + strand, within EX31_RS17255 at 2.732 kb on + strand, within EX31_RS17255 at 2.732 kb on + strand, within EX31_RS17255 at 2.732 kb on + strand, within EX31_RS17255 at 2.732 kb on + strand, within EX31_RS17255 at 2.732 kb on + strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.733 kb on - strand, within EX31_RS17255 at 2.800 kb on + strand, within EX31_RS17255 at 2.997 kb on - strand at 3.002 kb on + strand at 3.002 kb on + strand at 3.002 kb on + strand at 3.002 kb on + strand at 3.002 kb on + strand at 3.002 kb on + strand at 3.003 kb on - strand at 3.003 kb on - strand at 3.003 kb on - strand at 3.003 kb on - strand at 3.003 kb on - strand at 3.003 kb on - strand at 3.003 kb on - strand at 3.003 kb on - strand at 3.003 kb on - strand at 3.013 kb on + strand at 3.014 kb on - strand at 3.014 kb on - strand at 3.028 kb on - strand at 3.028 kb on - strand at 3.045 kb on + strand at 3.045 kb on + strand at 3.046 kb on - strand at 3.078 kb on + strand at 3.079 kb on - strand at 3.079 kb on - strand at 3.100 kb on - strand, within EX31_RS17260 at 3.100 kb on - strand, within EX31_RS17260 at 3.100 kb on - strand, within EX31_RS17260 at 3.120 kb on + strand, within EX31_RS17260 at 3.121 kb on - strand, within EX31_RS17260 at 3.121 kb on - strand, within EX31_RS17260 at 3.121 kb on - strand, within EX31_RS17260 at 3.121 kb on - strand, within EX31_RS17260 at 3.150 kb on - strand, within EX31_RS17260 at 3.150 kb on - strand, within EX31_RS17260 at 3.150 kb on - strand, within EX31_RS17260 at 3.150 kb on - strand, within EX31_RS17260 at 3.156 kb on - strand, within EX31_RS17260 at 3.213 kb on - strand, within EX31_RS17260 at 3.213 kb on - strand, within EX31_RS17260 at 3.225 kb on + strand, within EX31_RS17260 at 3.226 kb on - strand, within EX31_RS17260 at 3.226 kb on - strand, within EX31_RS17260 at 3.226 kb on - strand, within EX31_RS17260 at 3.226 kb on - strand, within EX31_RS17260 at 3.226 kb on - strand, within EX31_RS17260 at 3.229 kb on - strand, within EX31_RS17260 at 3.411 kb on + strand, within EX31_RS17260 at 3.424 kb on + strand, within EX31_RS17260 at 3.482 kb on - strand at 3.509 kb on + strand at 3.510 kb on - strand at 3.510 kb on - strand at 3.510 kb on - strand at 3.510 kb on - strand at 3.510 kb on - strand at 3.513 kb on + strand at 3.514 kb on - strand at 3.514 kb on - strand at 3.514 kb on - strand at 3.521 kb on + strand at 3.522 kb on - strand at 3.522 kb on - strand at 3.523 kb on + strand at 3.523 kb on + strand at 3.523 kb on + strand at 3.523 kb on + strand at 3.561 kb on + strand at 3.567 kb on - strand at 3.588 kb on - strand at 3.614 kb on + strand at 3.617 kb on - strand at 3.638 kb on + strand at 3.638 kb on + strand at 3.638 kb on + strand at 3.639 kb on - strand at 3.639 kb on - strand at 3.651 kb on + strand at 3.652 kb on - strand at 3.652 kb on - strand at 3.652 kb on - strand at 3.743 kb on + strand, within EX31_RS17265 at 3.744 kb on - strand, within EX31_RS17265 at 3.744 kb on - strand, within EX31_RS17265 at 3.744 kb on - strand, within EX31_RS17265 at 3.788 kb on + strand, within EX31_RS17265 at 3.844 kb on + strand, within EX31_RS17265 at 3.845 kb on - strand, within EX31_RS17265 at 3.950 kb on - strand, within EX31_RS17265 at 4.035 kb on - strand, within EX31_RS17265 at 4.087 kb on + strand at 4.116 kb on + strand at 4.117 kb on - strand at 4.117 kb on - strand at 4.117 kb on - strand at 4.123 kb on - strand at 4.123 kb on - strand at 4.123 kb on - strand at 4.123 kb on - strand at 4.124 kb on + strand at 4.125 kb on - strand at 4.125 kb on - strand at 4.180 kb on - strand, within EX31_RS24995 at 4.180 kb on - strand, within EX31_RS24995 at 4.248 kb on - strand, within EX31_RS24995 at 4.248 kb on - strand, within EX31_RS24995 at 4.320 kb on - strand, within EX31_RS24995 at 4.323 kb on + strand, within EX31_RS24995 at 4.324 kb on - strand, within EX31_RS24995 at 4.324 kb on - strand, within EX31_RS24995 at 4.324 kb on - strand, within EX31_RS24995 at 4.332 kb on + strand, within EX31_RS24995 at 4.332 kb on + strand, within EX31_RS24995 at 4.332 kb on + strand, within EX31_RS24995 at 4.332 kb on + strand, within EX31_RS24995 at 4.333 kb on - strand, within EX31_RS24995 at 4.333 kb on - strand, within EX31_RS24995 at 4.335 kb on - strand, within EX31_RS24995 at 4.335 kb on - strand, within EX31_RS24995 at 4.375 kb on - strand, within EX31_RS24995 at 4.437 kb on + strand, within EX31_RS24995 at 4.437 kb on + strand, within EX31_RS24995 at 4.438 kb on - strand, within EX31_RS24995 at 4.438 kb on - strand, within EX31_RS24995 at 4.444 kb on + strand, within EX31_RS24995 at 4.444 kb on + strand, within EX31_RS24995 at 4.445 kb on - strand, within EX31_RS24995 at 4.445 kb on - strand, within EX31_RS24995 at 4.445 kb on - strand, within EX31_RS24995 at 4.459 kb on + strand, within EX31_RS24995 at 4.459 kb on + strand, within EX31_RS24995 at 4.460 kb on - strand, within EX31_RS24995 at 4.460 kb on - strand, within EX31_RS24995 at 4.461 kb on + strand, within EX31_RS24995 at 4.461 kb on + strand, within EX31_RS24995 at 4.462 kb on - strand, within EX31_RS24995 at 4.462 kb on - strand, within EX31_RS24995 at 4.462 kb on - strand, within EX31_RS24995 at 4.505 kb on - strand, within EX31_RS24995 at 4.524 kb on + strand, within EX31_RS24995 at 4.547 kb on - strand at 4.567 kb on + strand at 4.567 kb on + strand at 4.568 kb on - strand at 4.568 kb on - strand at 4.568 kb on - strand at 4.695 kb on - strand at 4.695 kb on - strand at 4.737 kb on + strand at 4.784 kb on + strand at 4.852 kb on - strand at 4.879 kb on + strand at 4.882 kb on + strand at 4.882 kb on + strand at 4.883 kb on - strand at 4.883 kb on - strand at 4.883 kb on - strand at 4.917 kb on + strand at 4.918 kb on - strand at 4.922 kb on - strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.973 kb on - strand at 4.973 kb on - strand at 4.973 kb on - strand at 4.973 kb on - strand at 4.973 kb on - strand at 4.974 kb on + strand at 4.975 kb on - strand at 5.013 kb on + strand at 5.014 kb on - strand at 5.037 kb on + strand at 5.038 kb on - strand at 5.038 kb on - strand at 5.040 kb on + strand at 5.040 kb on + strand at 5.040 kb on + strand at 5.041 kb on - strand at 5.041 kb on - strand at 5.041 kb on - strand at 5.041 kb on - strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.045 kb on - strand at 5.045 kb on - strand at 5.045 kb on - strand at 5.045 kb on - strand at 5.047 kb on + strand at 5.047 kb on + strand at 5.047 kb on + strand at 5.047 kb on + strand at 5.048 kb on - strand at 5.051 kb on + strand at 5.052 kb on - strand at 5.060 kb on + strand at 5.060 kb on + strand at 5.061 kb on - strand at 5.061 kb on - strand at 5.074 kb on + strand at 5.074 kb on + strand at 5.074 kb on + strand at 5.077 kb on + strand at 5.077 kb on + strand at 5.078 kb on - strand at 5.078 kb on - strand at 5.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 2,674 - EX31_RS17255 0.19 -1.6 2,703 + EX31_RS17255 0.25 +0.6 2,704 - EX31_RS17255 0.26 +0.7 2,704 - EX31_RS17255 0.26 -0.7 2,732 + EX31_RS17255 0.32 -0.1 2,732 + EX31_RS17255 0.32 -0.1 2,732 + EX31_RS17255 0.32 -1.3 2,732 + EX31_RS17255 0.32 +0.7 2,732 + EX31_RS17255 0.32 -1.0 2,732 + EX31_RS17255 0.32 +0.2 2,732 + EX31_RS17255 0.32 -0.1 2,732 + EX31_RS17255 0.32 +0.2 2,733 - EX31_RS17255 0.32 +0.7 2,733 - EX31_RS17255 0.32 -0.0 2,733 - EX31_RS17255 0.32 -0.6 2,733 - EX31_RS17255 0.32 -0.3 2,733 - EX31_RS17255 0.32 +0.3 2,733 - EX31_RS17255 0.32 -0.1 2,733 - EX31_RS17255 0.32 -0.4 2,733 - EX31_RS17255 0.32 -0.4 2,733 - EX31_RS17255 0.32 +1.0 2,733 - EX31_RS17255 0.32 +0.5 2,733 - EX31_RS17255 0.32 -2.0 2,800 + EX31_RS17255 0.47 -0.4 2,997 - +0.3 3,002 + +1.0 3,002 + -0.3 3,002 + +0.3 3,002 + +0.4 3,002 + -0.2 3,002 + -0.3 3,003 - -0.4 3,003 - +0.1 3,003 - +1.2 3,003 - +0.7 3,003 - +0.6 3,003 - +0.9 3,003 - -2.0 3,003 - -1.1 3,003 - -0.7 3,013 + +0.3 3,014 - +0.1 3,014 - -0.6 3,028 - +0.4 3,028 - -0.3 3,045 + +0.4 3,045 + +0.8 3,046 - -0.4 3,078 + -1.1 3,079 - +1.7 3,079 - -0.7 3,100 - EX31_RS17260 0.12 -0.3 3,100 - EX31_RS17260 0.12 -0.1 3,100 - EX31_RS17260 0.12 -0.1 3,120 + EX31_RS17260 0.16 +1.3 3,121 - EX31_RS17260 0.16 +0.3 3,121 - EX31_RS17260 0.16 -0.8 3,121 - EX31_RS17260 0.16 -1.0 3,121 - EX31_RS17260 0.16 -0.4 3,150 - EX31_RS17260 0.22 +0.0 3,150 - EX31_RS17260 0.22 -0.2 3,150 - EX31_RS17260 0.22 +0.7 3,150 - EX31_RS17260 0.22 +0.5 3,156 - EX31_RS17260 0.23 -0.8 3,213 - EX31_RS17260 0.35 +0.0 3,213 - EX31_RS17260 0.35 +0.3 3,225 + EX31_RS17260 0.37 +0.2 3,226 - EX31_RS17260 0.37 -0.1 3,226 - EX31_RS17260 0.37 -1.4 3,226 - EX31_RS17260 0.37 +1.3 3,226 - EX31_RS17260 0.37 +1.3 3,226 - EX31_RS17260 0.37 +0.6 3,229 - EX31_RS17260 0.38 -0.3 3,411 + EX31_RS17260 0.76 -0.0 3,424 + EX31_RS17260 0.78 +0.2 3,482 - -0.4 3,509 + +0.0 3,510 - +0.4 3,510 - +0.5 3,510 - +1.5 3,510 - -1.0 3,510 - -0.8 3,513 + +0.7 3,514 - -0.1 3,514 - +0.8 3,514 - +0.0 3,521 + -0.1 3,522 - +0.5 3,522 - -0.4 3,523 + +0.5 3,523 + -0.5 3,523 + +0.7 3,523 + -3.1 3,561 + -0.3 3,567 - +0.3 3,588 - +0.6 3,614 + +0.6 3,617 - +1.0 3,638 + -1.0 3,638 + -2.4 3,638 + +0.6 3,639 - -0.1 3,639 - -1.0 3,651 + +0.4 3,652 - +0.4 3,652 - -1.0 3,652 - -0.3 3,743 + EX31_RS17265 0.16 -1.1 3,744 - EX31_RS17265 0.16 -1.4 3,744 - EX31_RS17265 0.16 +0.4 3,744 - EX31_RS17265 0.16 -1.1 3,788 + EX31_RS17265 0.27 -0.1 3,844 + EX31_RS17265 0.40 -0.5 3,845 - EX31_RS17265 0.40 +0.5 3,950 - EX31_RS17265 0.64 -0.8 4,035 - EX31_RS17265 0.84 +0.3 4,087 + -1.5 4,116 + +0.3 4,117 - -0.6 4,117 - +0.6 4,117 - -0.8 4,123 - +0.4 4,123 - +1.0 4,123 - +0.9 4,123 - -0.1 4,124 + +0.3 4,125 - +0.2 4,125 - +0.8 4,180 - EX31_RS24995 0.16 -0.5 4,180 - EX31_RS24995 0.16 +1.0 4,248 - EX31_RS24995 0.30 +0.8 4,248 - EX31_RS24995 0.30 +0.7 4,320 - EX31_RS24995 0.44 -0.2 4,323 + EX31_RS24995 0.45 +0.4 4,324 - EX31_RS24995 0.45 +0.3 4,324 - EX31_RS24995 0.45 +0.6 4,324 - EX31_RS24995 0.45 -0.2 4,332 + EX31_RS24995 0.47 -0.6 4,332 + EX31_RS24995 0.47 -1.0 4,332 + EX31_RS24995 0.47 +0.7 4,332 + EX31_RS24995 0.47 +0.3 4,333 - EX31_RS24995 0.47 +0.3 4,333 - EX31_RS24995 0.47 -0.7 4,335 - EX31_RS24995 0.47 +0.1 4,335 - EX31_RS24995 0.47 +0.2 4,375 - EX31_RS24995 0.55 +0.5 4,437 + EX31_RS24995 0.68 +0.2 4,437 + EX31_RS24995 0.68 +0.6 4,438 - EX31_RS24995 0.68 +1.5 4,438 - EX31_RS24995 0.68 -1.6 4,444 + EX31_RS24995 0.69 +0.5 4,444 + EX31_RS24995 0.69 -1.2 4,445 - EX31_RS24995 0.69 -2.0 4,445 - EX31_RS24995 0.69 +0.3 4,445 - EX31_RS24995 0.69 +0.3 4,459 + EX31_RS24995 0.72 +0.6 4,459 + EX31_RS24995 0.72 -0.3 4,460 - EX31_RS24995 0.72 -0.6 4,460 - EX31_RS24995 0.72 +1.0 4,461 + EX31_RS24995 0.73 -0.1 4,461 + EX31_RS24995 0.73 +0.2 4,462 - EX31_RS24995 0.73 -0.1 4,462 - EX31_RS24995 0.73 +0.7 4,462 - EX31_RS24995 0.73 -1.0 4,505 - EX31_RS24995 0.82 -1.2 4,524 + EX31_RS24995 0.85 +1.6 4,547 - +1.0 4,567 + +0.2 4,567 + +0.5 4,568 - -1.4 4,568 - -0.2 4,568 - -0.2 4,695 - -0.1 4,695 - +0.0 4,737 + -0.3 4,784 + -0.1 4,852 - -0.3 4,879 + +2.0 4,882 + -1.0 4,882 + +1.3 4,883 - +0.9 4,883 - +0.2 4,883 - -0.2 4,917 + +0.4 4,918 - -0.5 4,922 - +0.3 4,972 + -0.8 4,972 + -0.7 4,972 + -0.2 4,972 + +1.4 4,972 + -0.8 4,972 + +0.3 4,972 + +0.8 4,973 - +2.1 4,973 - +0.2 4,973 - +2.5 4,973 - +0.5 4,973 - -0.7 4,974 + +0.2 4,975 - -0.4 5,013 + +0.9 5,014 - +1.2 5,037 + +0.2 5,038 - -0.4 5,038 - +0.3 5,040 + -0.6 5,040 + +0.8 5,040 + +0.3 5,041 - -0.7 5,041 - -0.1 5,041 - -0.5 5,041 - +0.3 5,044 + +0.9 5,044 + +0.2 5,044 + +1.2 5,044 + +0.7 5,044 + -0.5 5,044 + -0.1 5,044 + -0.8 5,044 + -0.4 5,045 - -0.2 5,045 - -0.1 5,045 - -1.0 5,045 - -0.5 5,047 + +0.5 5,047 + +0.8 5,047 + -0.9 5,047 + +0.7 5,048 - +0.5 5,051 + +0.9 5,052 - +0.1 5,060 + -2.4 5,060 + +0.5 5,061 - +0.9 5,061 - -0.3 5,074 + +0.4 5,074 + +0.4 5,074 + -0.4 5,077 + -0.7 5,077 + -1.0 5,078 - -2.0 5,078 - -0.6 5,082 - -1.0
Or see this region's nucleotide sequence