Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17000 and EX31_RS17005 are separated by 4 nucleotides EX31_RS17005 and EX31_RS17010 are separated by 10 nucleotides EX31_RS17010 and EX31_RS17015 are separated by 63 nucleotides
EX31_RS17000: EX31_RS17000 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 10,645 to 11,739
_RS17000
EX31_RS17005: EX31_RS17005 - carbohydrate ABC transporter permease, at 11,744 to 12,586
_RS17005
EX31_RS17010: EX31_RS17010 - sugar ABC transporter permease, at 12,597 to 13,520
_RS17010
EX31_RS17015: EX31_RS17015 - sugar ABC transporter substrate-binding protein, at 13,584 to 14,864
_RS17015
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 11.676 kb on + strand at 11.676 kb on + strand at 11.676 kb on + strand at 11.676 kb on + strand at 11.676 kb on + strand at 11.677 kb on - strand at 11.677 kb on - strand at 11.677 kb on - strand at 11.703 kb on - strand at 12.142 kb on - strand, within EX31_RS17005 at 12.142 kb on - strand, within EX31_RS17005 at 12.191 kb on + strand, within EX31_RS17005 at 12.454 kb on - strand, within EX31_RS17005 at 12.454 kb on - strand, within EX31_RS17005 at 12.523 kb on - strand at 12.586 kb on + strand at 12.586 kb on + strand at 12.586 kb on + strand at 12.587 kb on - strand at 12.587 kb on - strand at 12.599 kb on - strand at 12.599 kb on - strand at 13.029 kb on - strand, within EX31_RS17010 at 13.033 kb on + strand, within EX31_RS17010 at 13.049 kb on + strand, within EX31_RS17010 at 13.078 kb on - strand, within EX31_RS17010 at 13.200 kb on + strand, within EX31_RS17010 at 13.262 kb on + strand, within EX31_RS17010 at 13.263 kb on - strand, within EX31_RS17010 at 13.373 kb on - strand, within EX31_RS17010 at 13.718 kb on - strand, within EX31_RS17015 at 13.718 kb on - strand, within EX31_RS17015 at 13.745 kb on + strand, within EX31_RS17015 at 13.760 kb on - strand, within EX31_RS17015 at 13.813 kb on + strand, within EX31_RS17015 at 13.814 kb on - strand, within EX31_RS17015 at 13.837 kb on + strand, within EX31_RS17015 at 13.837 kb on + strand, within EX31_RS17015 at 13.838 kb on - strand, within EX31_RS17015 at 13.838 kb on - strand, within EX31_RS17015 at 14.161 kb on + strand, within EX31_RS17015 at 14.265 kb on - strand, within EX31_RS17015 at 14.311 kb on + strand, within EX31_RS17015
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 11,676 + +0.4 11,676 + -2.1 11,676 + -0.3 11,676 + +0.3 11,676 + -1.6 11,677 - -0.0 11,677 - -2.3 11,677 - -0.7 11,703 - -0.4 12,142 - EX31_RS17005 0.47 +0.3 12,142 - EX31_RS17005 0.47 +0.7 12,191 + EX31_RS17005 0.53 -0.2 12,454 - EX31_RS17005 0.84 +0.5 12,454 - EX31_RS17005 0.84 +3.6 12,523 - -0.6 12,586 + -0.5 12,586 + +0.1 12,586 + -1.4 12,587 - +0.3 12,587 - +0.7 12,599 - -0.1 12,599 - +1.4 13,029 - EX31_RS17010 0.47 -0.6 13,033 + EX31_RS17010 0.47 -0.9 13,049 + EX31_RS17010 0.49 -0.7 13,078 - EX31_RS17010 0.52 +0.5 13,200 + EX31_RS17010 0.65 -0.1 13,262 + EX31_RS17010 0.72 +0.1 13,263 - EX31_RS17010 0.72 -1.0 13,373 - EX31_RS17010 0.84 +0.4 13,718 - EX31_RS17015 0.10 -0.2 13,718 - EX31_RS17015 0.10 +0.0 13,745 + EX31_RS17015 0.13 +0.9 13,760 - EX31_RS17015 0.14 +1.3 13,813 + EX31_RS17015 0.18 -0.5 13,814 - EX31_RS17015 0.18 -0.1 13,837 + EX31_RS17015 0.20 +0.1 13,837 + EX31_RS17015 0.20 +1.1 13,838 - EX31_RS17015 0.20 -0.9 13,838 - EX31_RS17015 0.20 +0.7 14,161 + EX31_RS17015 0.45 +0.1 14,265 - EX31_RS17015 0.53 +1.0 14,311 + EX31_RS17015 0.57 +0.6
Or see this region's nucleotide sequence