Strain Fitness in Rahnella sp. WP5 around EX31_RS16965

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16960 and EX31_RS16965 are separated by 49 nucleotidesEX31_RS16965 and EX31_RS16970 overlap by 4 nucleotides EX31_RS16960: EX31_RS16960 - ABC transporter substrate-binding protein, at 953 to 1,954 _RS16960 EX31_RS16965: EX31_RS16965 - iron ABC transporter permease, at 2,004 to 3,662 _RS16965 EX31_RS16970: EX31_RS16970 - MFS transporter, at 3,659 to 5,152 _RS16970 Position (kb) 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1.074 kb on - strand, within EX31_RS16960at 1.218 kb on + strand, within EX31_RS16960at 1.218 kb on + strand, within EX31_RS16960at 1.218 kb on + strand, within EX31_RS16960at 1.218 kb on + strand, within EX31_RS16960at 1.219 kb on - strand, within EX31_RS16960at 1.219 kb on - strand, within EX31_RS16960at 1.219 kb on - strand, within EX31_RS16960at 1.222 kb on + strand, within EX31_RS16960at 1.222 kb on + strand, within EX31_RS16960at 1.223 kb on - strand, within EX31_RS16960at 1.328 kb on + strand, within EX31_RS16960at 1.331 kb on + strand, within EX31_RS16960at 1.331 kb on + strand, within EX31_RS16960at 1.332 kb on - strand, within EX31_RS16960at 1.414 kb on - strand, within EX31_RS16960at 1.634 kb on + strand, within EX31_RS16960at 1.634 kb on + strand, within EX31_RS16960at 1.634 kb on + strand, within EX31_RS16960at 1.635 kb on - strand, within EX31_RS16960at 1.643 kb on + strand, within EX31_RS16960at 1.910 kb on - strandat 1.953 kb on - strandat 1.953 kb on - strandat 1.999 kb on - strandat 2.145 kb on + strandat 2.194 kb on + strand, within EX31_RS16965at 2.328 kb on + strand, within EX31_RS16965at 2.328 kb on + strand, within EX31_RS16965at 2.329 kb on - strand, within EX31_RS16965at 2.329 kb on - strand, within EX31_RS16965at 2.330 kb on + strand, within EX31_RS16965at 2.330 kb on + strand, within EX31_RS16965at 2.331 kb on - strand, within EX31_RS16965at 2.331 kb on - strand, within EX31_RS16965at 2.472 kb on + strand, within EX31_RS16965at 2.472 kb on + strand, within EX31_RS16965at 2.531 kb on + strand, within EX31_RS16965at 2.621 kb on + strand, within EX31_RS16965at 2.621 kb on + strand, within EX31_RS16965at 2.901 kb on - strand, within EX31_RS16965at 2.901 kb on - strand, within EX31_RS16965at 3.017 kb on + strand, within EX31_RS16965at 3.131 kb on - strand, within EX31_RS16965at 3.261 kb on + strand, within EX31_RS16965at 3.325 kb on - strand, within EX31_RS16965at 3.537 kb on + strandat 3.537 kb on + strandat 3.537 kb on + strandat 3.537 kb on + strandat 3.537 kb on + strandat 3.538 kb on - strandat 3.538 kb on - strandat 3.759 kb on - strandat 4.022 kb on - strand, within EX31_RS16970at 4.025 kb on - strand, within EX31_RS16970at 4.025 kb on - strand, within EX31_RS16970at 4.025 kb on - strand, within EX31_RS16970at 4.025 kb on - strand, within EX31_RS16970at 4.131 kb on - strand, within EX31_RS16970at 4.158 kb on + strand, within EX31_RS16970at 4.275 kb on + strand, within EX31_RS16970at 4.275 kb on + strand, within EX31_RS16970at 4.275 kb on + strand, within EX31_RS16970at 4.275 kb on + strand, within EX31_RS16970at 4.275 kb on + strand, within EX31_RS16970at 4.275 kb on + strand, within EX31_RS16970at 4.275 kb on + strand, within EX31_RS16970at 4.276 kb on - strand, within EX31_RS16970at 4.276 kb on - strand, within EX31_RS16970at 4.276 kb on - strand, within EX31_RS16970at 4.276 kb on - strand, within EX31_RS16970at 4.276 kb on - strand, within EX31_RS16970at 4.276 kb on - strand, within EX31_RS16970at 4.397 kb on - strand, within EX31_RS16970at 4.546 kb on + strand, within EX31_RS16970at 4.546 kb on + strand, within EX31_RS16970at 4.547 kb on - strand, within EX31_RS16970at 4.555 kb on + strand, within EX31_RS16970at 4.579 kb on - strand, within EX31_RS16970

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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1,074 - EX31_RS16960 0.12 +0.2
1,218 + EX31_RS16960 0.26 -0.2
1,218 + EX31_RS16960 0.26 +0.5
1,218 + EX31_RS16960 0.26 -1.0
1,218 + EX31_RS16960 0.26 -1.8
1,219 - EX31_RS16960 0.27 -0.4
1,219 - EX31_RS16960 0.27 +1.2
1,219 - EX31_RS16960 0.27 +2.0
1,222 + EX31_RS16960 0.27 +0.4
1,222 + EX31_RS16960 0.27 +1.5
1,223 - EX31_RS16960 0.27 -1.9
1,328 + EX31_RS16960 0.37 +0.9
1,331 + EX31_RS16960 0.38 +1.0
1,331 + EX31_RS16960 0.38 +0.9
1,332 - EX31_RS16960 0.38 +0.6
1,414 - EX31_RS16960 0.46 -0.2
1,634 + EX31_RS16960 0.68 -1.6
1,634 + EX31_RS16960 0.68 +0.1
1,634 + EX31_RS16960 0.68 +0.4
1,635 - EX31_RS16960 0.68 +0.7
1,643 + EX31_RS16960 0.69 -0.5
1,910 - +0.5
1,953 - +0.9
1,953 - -1.3
1,999 - -3.1
2,145 + -0.2
2,194 + EX31_RS16965 0.11 -0.6
2,328 + EX31_RS16965 0.20 -1.3
2,328 + EX31_RS16965 0.20 +0.9
2,329 - EX31_RS16965 0.20 -0.3
2,329 - EX31_RS16965 0.20 -0.1
2,330 + EX31_RS16965 0.20 -2.0
2,330 + EX31_RS16965 0.20 -0.6
2,331 - EX31_RS16965 0.20 -0.9
2,331 - EX31_RS16965 0.20 -0.1
2,472 + EX31_RS16965 0.28 -0.3
2,472 + EX31_RS16965 0.28 -0.4
2,531 + EX31_RS16965 0.32 +0.6
2,621 + EX31_RS16965 0.37 +0.5
2,621 + EX31_RS16965 0.37 +0.3
2,901 - EX31_RS16965 0.54 +0.1
2,901 - EX31_RS16965 0.54 -1.1
3,017 + EX31_RS16965 0.61 -1.5
3,131 - EX31_RS16965 0.68 -0.0
3,261 + EX31_RS16965 0.76 -2.0
3,325 - EX31_RS16965 0.80 -0.2
3,537 + +0.8
3,537 + +1.2
3,537 + +0.7
3,537 + +0.5
3,537 + -0.6
3,538 - +0.1
3,538 - -0.4
3,759 - -1.5
4,022 - EX31_RS16970 0.24 -0.4
4,025 - EX31_RS16970 0.24 -0.6
4,025 - EX31_RS16970 0.24 +1.0
4,025 - EX31_RS16970 0.24 -1.3
4,025 - EX31_RS16970 0.24 +0.5
4,131 - EX31_RS16970 0.32 +0.0
4,158 + EX31_RS16970 0.33 -0.9
4,275 + EX31_RS16970 0.41 +0.1
4,275 + EX31_RS16970 0.41 +0.2
4,275 + EX31_RS16970 0.41 -1.6
4,275 + EX31_RS16970 0.41 -0.7
4,275 + EX31_RS16970 0.41 -0.0
4,275 + EX31_RS16970 0.41 +0.7
4,275 + EX31_RS16970 0.41 -0.4
4,276 - EX31_RS16970 0.41 +0.4
4,276 - EX31_RS16970 0.41 +1.0
4,276 - EX31_RS16970 0.41 -2.1
4,276 - EX31_RS16970 0.41 -0.3
4,276 - EX31_RS16970 0.41 -1.5
4,276 - EX31_RS16970 0.41 +0.2
4,397 - EX31_RS16970 0.49 +0.1
4,546 + EX31_RS16970 0.59 -0.4
4,546 + EX31_RS16970 0.59 -0.0
4,547 - EX31_RS16970 0.59 -0.0
4,555 + EX31_RS16970 0.60 -0.7
4,579 - EX31_RS16970 0.62 -1.7

Or see this region's nucleotide sequence