Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16960 and EX31_RS16965 are separated by 49 nucleotides EX31_RS16965 and EX31_RS16970 overlap by 4 nucleotides
EX31_RS16960: EX31_RS16960 - ABC transporter substrate-binding protein, at 953 to 1,954
_RS16960
EX31_RS16965: EX31_RS16965 - iron ABC transporter permease, at 2,004 to 3,662
_RS16965
EX31_RS16970: EX31_RS16970 - MFS transporter, at 3,659 to 5,152
_RS16970
Position (kb)
2
3
4 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1.074 kb on - strand, within EX31_RS16960 at 1.218 kb on + strand, within EX31_RS16960 at 1.218 kb on + strand, within EX31_RS16960 at 1.218 kb on + strand, within EX31_RS16960 at 1.218 kb on + strand, within EX31_RS16960 at 1.219 kb on - strand, within EX31_RS16960 at 1.219 kb on - strand, within EX31_RS16960 at 1.219 kb on - strand, within EX31_RS16960 at 1.222 kb on + strand, within EX31_RS16960 at 1.222 kb on + strand, within EX31_RS16960 at 1.223 kb on - strand, within EX31_RS16960 at 1.328 kb on + strand, within EX31_RS16960 at 1.331 kb on + strand, within EX31_RS16960 at 1.331 kb on + strand, within EX31_RS16960 at 1.332 kb on - strand, within EX31_RS16960 at 1.414 kb on - strand, within EX31_RS16960 at 1.634 kb on + strand, within EX31_RS16960 at 1.634 kb on + strand, within EX31_RS16960 at 1.634 kb on + strand, within EX31_RS16960 at 1.635 kb on - strand, within EX31_RS16960 at 1.643 kb on + strand, within EX31_RS16960 at 1.910 kb on - strand at 1.953 kb on - strand at 1.953 kb on - strand at 1.999 kb on - strand at 2.145 kb on + strand at 2.194 kb on + strand, within EX31_RS16965 at 2.328 kb on + strand, within EX31_RS16965 at 2.328 kb on + strand, within EX31_RS16965 at 2.329 kb on - strand, within EX31_RS16965 at 2.329 kb on - strand, within EX31_RS16965 at 2.330 kb on + strand, within EX31_RS16965 at 2.330 kb on + strand, within EX31_RS16965 at 2.331 kb on - strand, within EX31_RS16965 at 2.331 kb on - strand, within EX31_RS16965 at 2.472 kb on + strand, within EX31_RS16965 at 2.472 kb on + strand, within EX31_RS16965 at 2.531 kb on + strand, within EX31_RS16965 at 2.621 kb on + strand, within EX31_RS16965 at 2.621 kb on + strand, within EX31_RS16965 at 2.901 kb on - strand, within EX31_RS16965 at 2.901 kb on - strand, within EX31_RS16965 at 3.017 kb on + strand, within EX31_RS16965 at 3.131 kb on - strand, within EX31_RS16965 at 3.261 kb on + strand, within EX31_RS16965 at 3.325 kb on - strand, within EX31_RS16965 at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.537 kb on + strand at 3.538 kb on - strand at 3.538 kb on - strand at 3.759 kb on - strand at 4.022 kb on - strand, within EX31_RS16970 at 4.025 kb on - strand, within EX31_RS16970 at 4.025 kb on - strand, within EX31_RS16970 at 4.025 kb on - strand, within EX31_RS16970 at 4.025 kb on - strand, within EX31_RS16970 at 4.131 kb on - strand, within EX31_RS16970 at 4.158 kb on + strand, within EX31_RS16970 at 4.275 kb on + strand, within EX31_RS16970 at 4.275 kb on + strand, within EX31_RS16970 at 4.275 kb on + strand, within EX31_RS16970 at 4.275 kb on + strand, within EX31_RS16970 at 4.275 kb on + strand, within EX31_RS16970 at 4.275 kb on + strand, within EX31_RS16970 at 4.275 kb on + strand, within EX31_RS16970 at 4.276 kb on - strand, within EX31_RS16970 at 4.276 kb on - strand, within EX31_RS16970 at 4.276 kb on - strand, within EX31_RS16970 at 4.276 kb on - strand, within EX31_RS16970 at 4.276 kb on - strand, within EX31_RS16970 at 4.276 kb on - strand, within EX31_RS16970 at 4.397 kb on - strand, within EX31_RS16970 at 4.546 kb on + strand, within EX31_RS16970 at 4.546 kb on + strand, within EX31_RS16970 at 4.547 kb on - strand, within EX31_RS16970 at 4.555 kb on + strand, within EX31_RS16970 at 4.579 kb on - strand, within EX31_RS16970
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 1,074 - EX31_RS16960 0.12 +0.2 1,218 + EX31_RS16960 0.26 -0.2 1,218 + EX31_RS16960 0.26 +0.5 1,218 + EX31_RS16960 0.26 -1.0 1,218 + EX31_RS16960 0.26 -1.8 1,219 - EX31_RS16960 0.27 -0.4 1,219 - EX31_RS16960 0.27 +1.2 1,219 - EX31_RS16960 0.27 +2.0 1,222 + EX31_RS16960 0.27 +0.4 1,222 + EX31_RS16960 0.27 +1.5 1,223 - EX31_RS16960 0.27 -1.9 1,328 + EX31_RS16960 0.37 +0.9 1,331 + EX31_RS16960 0.38 +1.0 1,331 + EX31_RS16960 0.38 +0.9 1,332 - EX31_RS16960 0.38 +0.6 1,414 - EX31_RS16960 0.46 -0.2 1,634 + EX31_RS16960 0.68 -1.6 1,634 + EX31_RS16960 0.68 +0.1 1,634 + EX31_RS16960 0.68 +0.4 1,635 - EX31_RS16960 0.68 +0.7 1,643 + EX31_RS16960 0.69 -0.5 1,910 - +0.5 1,953 - +0.9 1,953 - -1.3 1,999 - -3.1 2,145 + -0.2 2,194 + EX31_RS16965 0.11 -0.6 2,328 + EX31_RS16965 0.20 -1.3 2,328 + EX31_RS16965 0.20 +0.9 2,329 - EX31_RS16965 0.20 -0.3 2,329 - EX31_RS16965 0.20 -0.1 2,330 + EX31_RS16965 0.20 -2.0 2,330 + EX31_RS16965 0.20 -0.6 2,331 - EX31_RS16965 0.20 -0.9 2,331 - EX31_RS16965 0.20 -0.1 2,472 + EX31_RS16965 0.28 -0.3 2,472 + EX31_RS16965 0.28 -0.4 2,531 + EX31_RS16965 0.32 +0.6 2,621 + EX31_RS16965 0.37 +0.5 2,621 + EX31_RS16965 0.37 +0.3 2,901 - EX31_RS16965 0.54 +0.1 2,901 - EX31_RS16965 0.54 -1.1 3,017 + EX31_RS16965 0.61 -1.5 3,131 - EX31_RS16965 0.68 -0.0 3,261 + EX31_RS16965 0.76 -2.0 3,325 - EX31_RS16965 0.80 -0.2 3,537 + +0.8 3,537 + +1.2 3,537 + +0.7 3,537 + +0.5 3,537 + -0.6 3,538 - +0.1 3,538 - -0.4 3,759 - -1.5 4,022 - EX31_RS16970 0.24 -0.4 4,025 - EX31_RS16970 0.24 -0.6 4,025 - EX31_RS16970 0.24 +1.0 4,025 - EX31_RS16970 0.24 -1.3 4,025 - EX31_RS16970 0.24 +0.5 4,131 - EX31_RS16970 0.32 +0.0 4,158 + EX31_RS16970 0.33 -0.9 4,275 + EX31_RS16970 0.41 +0.1 4,275 + EX31_RS16970 0.41 +0.2 4,275 + EX31_RS16970 0.41 -1.6 4,275 + EX31_RS16970 0.41 -0.7 4,275 + EX31_RS16970 0.41 -0.0 4,275 + EX31_RS16970 0.41 +0.7 4,275 + EX31_RS16970 0.41 -0.4 4,276 - EX31_RS16970 0.41 +0.4 4,276 - EX31_RS16970 0.41 +1.0 4,276 - EX31_RS16970 0.41 -2.1 4,276 - EX31_RS16970 0.41 -0.3 4,276 - EX31_RS16970 0.41 -1.5 4,276 - EX31_RS16970 0.41 +0.2 4,397 - EX31_RS16970 0.49 +0.1 4,546 + EX31_RS16970 0.59 -0.4 4,546 + EX31_RS16970 0.59 -0.0 4,547 - EX31_RS16970 0.59 -0.0 4,555 + EX31_RS16970 0.60 -0.7 4,579 - EX31_RS16970 0.62 -1.7
Or see this region's nucleotide sequence