Strain Fitness in Rahnella sp. WP5 around EX31_RS16325

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16320 and EX31_RS16325 are separated by 149 nucleotidesEX31_RS16325 and EX31_RS16330 overlap by 1 nucleotidesEX31_RS16330 and EX31_RS16335 are separated by 218 nucleotides EX31_RS16320: EX31_RS16320 - conjugal transfer protein TraT, at 11,690 to 12,424 _RS16320 EX31_RS16325: EX31_RS16325 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 12,574 to 12,819 _RS16325 EX31_RS16330: EX31_RS16330 - endoribonuclease MazF, at 12,819 to 13,151 _RS16330 EX31_RS16335: EX31_RS16335 - hypothetical protein, at 13,370 to 13,717 _RS16335 Position (kb) 12 13Strain fitness (log2 ratio) -2 -1 0 1 2at 11.594 kb on + strandat 11.594 kb on + strandat 11.594 kb on + strandat 11.594 kb on + strandat 11.595 kb on - strandat 11.627 kb on + strandat 11.627 kb on + strandat 11.627 kb on + strandat 11.627 kb on + strandat 11.627 kb on + strandat 11.628 kb on - strandat 11.628 kb on - strandat 11.628 kb on - strandat 11.629 kb on + strandat 11.637 kb on + strandat 11.637 kb on + strandat 11.637 kb on + strandat 11.688 kb on - strandat 11.688 kb on - strandat 11.688 kb on - strandat 11.739 kb on + strandat 11.740 kb on - strandat 11.752 kb on + strandat 11.752 kb on + strandat 11.818 kb on - strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.849 kb on + strand, within EX31_RS16320at 11.850 kb on - strand, within EX31_RS16320at 11.850 kb on - strand, within EX31_RS16320at 11.850 kb on - strand, within EX31_RS16320at 11.850 kb on - strand, within EX31_RS16320at 11.850 kb on - strand, within EX31_RS16320at 11.904 kb on + strand, within EX31_RS16320at 11.905 kb on - strand, within EX31_RS16320at 11.924 kb on - strand, within EX31_RS16320at 11.924 kb on - strand, within EX31_RS16320at 11.930 kb on + strand, within EX31_RS16320at 11.930 kb on + strand, within EX31_RS16320at 11.931 kb on - strand, within EX31_RS16320at 11.931 kb on - strand, within EX31_RS16320at 11.931 kb on - strand, within EX31_RS16320at 11.931 kb on - strand, within EX31_RS16320at 11.931 kb on - strand, within EX31_RS16320at 11.931 kb on - strand, within EX31_RS16320at 11.931 kb on - strand, within EX31_RS16320at 11.931 kb on - strand, within EX31_RS16320at 11.931 kb on - strand, within EX31_RS16320at 11.960 kb on + strand, within EX31_RS16320at 11.960 kb on + strand, within EX31_RS16320at 11.961 kb on - strand, within EX31_RS16320at 11.963 kb on + strand, within EX31_RS16320at 11.964 kb on - strand, within EX31_RS16320at 11.964 kb on - strand, within EX31_RS16320at 12.086 kb on + strand, within EX31_RS16320at 12.086 kb on + strand, within EX31_RS16320at 12.086 kb on + strand, within EX31_RS16320at 12.086 kb on + strand, within EX31_RS16320at 12.086 kb on + strand, within EX31_RS16320at 12.087 kb on - strand, within EX31_RS16320at 12.087 kb on - strand, within EX31_RS16320at 12.088 kb on + strand, within EX31_RS16320at 12.088 kb on + strand, within EX31_RS16320at 12.088 kb on + strand, within EX31_RS16320at 12.088 kb on + strand, within EX31_RS16320at 12.088 kb on + strand, within EX31_RS16320at 12.088 kb on + strand, within EX31_RS16320at 12.088 kb on + strand, within EX31_RS16320at 12.088 kb on + strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.089 kb on - strand, within EX31_RS16320at 12.120 kb on + strand, within EX31_RS16320at 12.121 kb on - strand, within EX31_RS16320at 12.179 kb on + strand, within EX31_RS16320at 12.179 kb on + strand, within EX31_RS16320at 12.179 kb on + strand, within EX31_RS16320at 12.179 kb on + strand, within EX31_RS16320at 12.179 kb on + strand, within EX31_RS16320at 12.180 kb on - strand, within EX31_RS16320at 12.180 kb on - strand, within EX31_RS16320at 12.180 kb on - strand, within EX31_RS16320at 12.180 kb on - strand, within EX31_RS16320at 12.180 kb on - strand, within EX31_RS16320at 12.238 kb on + strand, within EX31_RS16320at 12.238 kb on + strand, within EX31_RS16320at 12.239 kb on - strand, within EX31_RS16320at 12.262 kb on + strand, within EX31_RS16320at 12.263 kb on - strand, within EX31_RS16320at 12.263 kb on - strand, within EX31_RS16320at 12.263 kb on - strand, within EX31_RS16320at 12.334 kb on + strand, within EX31_RS16320at 12.370 kb on + strandat 12.370 kb on + strandat 12.422 kb on + strandat 12.422 kb on + strandat 12.422 kb on + strandat 12.422 kb on + strandat 12.422 kb on + strandat 12.441 kb on + strandat 12.441 kb on + strandat 12.441 kb on + strandat 12.471 kb on - strandat 12.471 kb on - strandat 12.471 kb on - strandat 12.471 kb on - strandat 12.501 kb on - strandat 12.504 kb on + strandat 12.528 kb on + strandat 12.528 kb on + strandat 12.529 kb on - strandat 12.531 kb on + strandat 12.532 kb on - strandat 12.538 kb on - strandat 12.542 kb on + strandat 12.585 kb on + strandat 12.585 kb on + strandat 12.719 kb on + strand, within EX31_RS16325at 12.777 kb on + strand, within EX31_RS16325at 12.777 kb on + strand, within EX31_RS16325at 12.777 kb on + strand, within EX31_RS16325at 12.812 kb on + strandat 12.812 kb on + strandat 12.933 kb on + strand, within EX31_RS16330at 12.933 kb on + strand, within EX31_RS16330at 12.933 kb on + strand, within EX31_RS16330at 12.933 kb on + strand, within EX31_RS16330at 12.933 kb on + strand, within EX31_RS16330at 12.933 kb on + strand, within EX31_RS16330at 12.933 kb on + strand, within EX31_RS16330at 12.935 kb on + strand, within EX31_RS16330at 12.955 kb on + strand, within EX31_RS16330at 12.955 kb on + strand, within EX31_RS16330at 12.955 kb on + strand, within EX31_RS16330at 12.955 kb on + strand, within EX31_RS16330at 13.009 kb on + strand, within EX31_RS16330at 13.120 kb on + strandat 13.120 kb on + strandat 13.133 kb on + strandat 13.133 kb on + strandat 13.133 kb on + strandat 13.144 kb on + strandat 13.144 kb on + strandat 13.144 kb on + strandat 13.144 kb on + strandat 13.144 kb on + strandat 13.145 kb on - strandat 13.170 kb on - strandat 13.170 kb on - strandat 13.172 kb on + strandat 13.187 kb on + strandat 13.190 kb on + strandat 13.190 kb on + strandat 13.190 kb on + strandat 13.191 kb on - strandat 13.218 kb on + strandat 13.218 kb on + strandat 13.219 kb on - strandat 13.223 kb on + strandat 13.223 kb on + strandat 13.223 kb on + strandat 13.223 kb on + strandat 13.223 kb on + strandat 13.223 kb on + strandat 13.223 kb on + strandat 13.223 kb on + strandat 13.223 kb on + strandat 13.223 kb on + strandat 13.223 kb on + strandat 13.224 kb on - strandat 13.224 kb on - strandat 13.224 kb on - strandat 13.224 kb on - strandat 13.224 kb on - strandat 13.224 kb on - strandat 13.224 kb on - strandat 13.224 kb on - strandat 13.233 kb on - strandat 13.233 kb on - strandat 13.233 kb on - strandat 13.233 kb on - strandat 13.233 kb on - strandat 13.246 kb on + strandat 13.246 kb on + strandat 13.247 kb on - strandat 13.247 kb on - strandat 13.374 kb on + strandat 13.374 kb on + strandat 13.374 kb on + strandat 13.374 kb on + strandat 13.375 kb on - strandat 13.375 kb on - strandat 13.375 kb on - strandat 13.375 kb on - strandat 13.375 kb on - strandat 13.375 kb on - strandat 13.376 kb on + strandat 13.376 kb on + strandat 13.377 kb on - strandat 13.377 kb on - strandat 13.377 kb on - strandat 13.377 kb on - strandat 13.408 kb on + strand, within EX31_RS16335at 13.486 kb on + strand, within EX31_RS16335at 13.487 kb on - strand, within EX31_RS16335at 13.487 kb on - strand, within EX31_RS16335at 13.487 kb on - strand, within EX31_RS16335at 13.532 kb on - strand, within EX31_RS16335at 13.557 kb on + strand, within EX31_RS16335at 13.558 kb on - strand, within EX31_RS16335at 13.566 kb on + strand, within EX31_RS16335at 13.620 kb on + strand, within EX31_RS16335at 13.620 kb on + strand, within EX31_RS16335at 13.620 kb on + strand, within EX31_RS16335at 13.681 kb on + strand, within EX31_RS16335at 13.682 kb on - strand, within EX31_RS16335at 13.682 kb on - strand, within EX31_RS16335at 13.699 kb on + strandat 13.699 kb on + strandat 13.699 kb on + strandat 13.699 kb on + strandat 13.699 kb on + strandat 13.700 kb on - strandat 13.700 kb on - strandat 13.700 kb on - strandat 13.700 kb on - strandat 13.700 kb on - strandat 13.700 kb on - strandat 13.700 kb on - strandat 13.700 kb on - strandat 13.700 kb on - strandat 13.700 kb on - strandat 13.700 kb on - strandat 13.716 kb on - strandat 13.724 kb on + strandat 13.791 kb on + strandat 13.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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11,594 + +1.5
11,594 + +0.5
11,594 + -0.1
11,594 + +0.3
11,595 - +0.1
11,627 + +1.0
11,627 + -0.2
11,627 + +0.2
11,627 + -0.3
11,627 + +0.7
11,628 - +0.5
11,628 - -0.5
11,628 - -0.2
11,629 + -1.2
11,637 + +0.4
11,637 + -0.5
11,637 + +0.1
11,688 - -0.7
11,688 - +1.2
11,688 - +1.0
11,739 + +0.4
11,740 - +1.2
11,752 + +1.9
11,752 + +0.2
11,818 - EX31_RS16320 0.17 -0.2
11,849 + EX31_RS16320 0.22 +0.8
11,849 + EX31_RS16320 0.22 +0.0
11,849 + EX31_RS16320 0.22 +0.2
11,849 + EX31_RS16320 0.22 +0.3
11,849 + EX31_RS16320 0.22 +0.6
11,849 + EX31_RS16320 0.22 +1.1
11,849 + EX31_RS16320 0.22 -0.1
11,849 + EX31_RS16320 0.22 -0.3
11,849 + EX31_RS16320 0.22 +0.2
11,849 + EX31_RS16320 0.22 -0.8
11,849 + EX31_RS16320 0.22 +0.8
11,850 - EX31_RS16320 0.22 -0.6
11,850 - EX31_RS16320 0.22 -0.9
11,850 - EX31_RS16320 0.22 +0.9
11,850 - EX31_RS16320 0.22 +1.1
11,850 - EX31_RS16320 0.22 -0.6
11,904 + EX31_RS16320 0.29 -1.0
11,905 - EX31_RS16320 0.29 +0.0
11,924 - EX31_RS16320 0.32 -0.0
11,924 - EX31_RS16320 0.32 +0.9
11,930 + EX31_RS16320 0.33 -1.7
11,930 + EX31_RS16320 0.33 +0.4
11,931 - EX31_RS16320 0.33 -0.2
11,931 - EX31_RS16320 0.33 +0.7
11,931 - EX31_RS16320 0.33 -0.5
11,931 - EX31_RS16320 0.33 +0.1
11,931 - EX31_RS16320 0.33 -0.2
11,931 - EX31_RS16320 0.33 -0.5
11,931 - EX31_RS16320 0.33 -0.1
11,931 - EX31_RS16320 0.33 +0.1
11,931 - EX31_RS16320 0.33 -1.8
11,960 + EX31_RS16320 0.37 +1.0
11,960 + EX31_RS16320 0.37 +0.9
11,961 - EX31_RS16320 0.37 -0.5
11,963 + EX31_RS16320 0.37 -0.5
11,964 - EX31_RS16320 0.37 -0.2
11,964 - EX31_RS16320 0.37 +0.5
12,086 + EX31_RS16320 0.54 -0.9
12,086 + EX31_RS16320 0.54 +1.2
12,086 + EX31_RS16320 0.54 +0.3
12,086 + EX31_RS16320 0.54 -0.0
12,086 + EX31_RS16320 0.54 +0.1
12,087 - EX31_RS16320 0.54 -0.2
12,087 - EX31_RS16320 0.54 +0.6
12,088 + EX31_RS16320 0.54 +0.8
12,088 + EX31_RS16320 0.54 +0.2
12,088 + EX31_RS16320 0.54 -0.4
12,088 + EX31_RS16320 0.54 +0.1
12,088 + EX31_RS16320 0.54 +0.5
12,088 + EX31_RS16320 0.54 +0.1
12,088 + EX31_RS16320 0.54 +0.1
12,088 + EX31_RS16320 0.54 +1.5
12,089 - EX31_RS16320 0.54 +0.6
12,089 - EX31_RS16320 0.54 +0.9
12,089 - EX31_RS16320 0.54 +0.1
12,089 - EX31_RS16320 0.54 -0.6
12,089 - EX31_RS16320 0.54 -0.6
12,089 - EX31_RS16320 0.54 -0.3
12,089 - EX31_RS16320 0.54 +0.3
12,089 - EX31_RS16320 0.54 +0.9
12,089 - EX31_RS16320 0.54 -0.3
12,089 - EX31_RS16320 0.54 +0.4
12,089 - EX31_RS16320 0.54 -0.3
12,089 - EX31_RS16320 0.54 -0.0
12,089 - EX31_RS16320 0.54 +0.1
12,089 - EX31_RS16320 0.54 -2.0
12,089 - EX31_RS16320 0.54 -0.1
12,120 + EX31_RS16320 0.59 -1.2
12,121 - EX31_RS16320 0.59 +0.8
12,179 + EX31_RS16320 0.67 +0.1
12,179 + EX31_RS16320 0.67 -0.6
12,179 + EX31_RS16320 0.67 -0.3
12,179 + EX31_RS16320 0.67 -0.2
12,179 + EX31_RS16320 0.67 +0.5
12,180 - EX31_RS16320 0.67 +0.5
12,180 - EX31_RS16320 0.67 -0.0
12,180 - EX31_RS16320 0.67 -0.4
12,180 - EX31_RS16320 0.67 -0.0
12,180 - EX31_RS16320 0.67 -0.1
12,238 + EX31_RS16320 0.75 +0.8
12,238 + EX31_RS16320 0.75 -0.8
12,239 - EX31_RS16320 0.75 +0.3
12,262 + EX31_RS16320 0.78 -0.4
12,263 - EX31_RS16320 0.78 +1.2
12,263 - EX31_RS16320 0.78 +0.4
12,263 - EX31_RS16320 0.78 +0.7
12,334 + EX31_RS16320 0.88 -0.6
12,370 + +0.9
12,370 + -0.1
12,422 + +0.5
12,422 + -0.7
12,422 + +0.7
12,422 + -1.5
12,422 + -0.3
12,441 + -0.1
12,441 + +1.3
12,441 + -1.3
12,471 - +0.3
12,471 - -0.1
12,471 - +0.1
12,471 - -0.3
12,501 - -0.5
12,504 + +0.3
12,528 + +0.1
12,528 + -0.1
12,529 - -0.5
12,531 + +0.2
12,532 - -1.0
12,538 - -0.1
12,542 + -0.6
12,585 + +0.5
12,585 + +0.6
12,719 + EX31_RS16325 0.59 +0.5
12,777 + EX31_RS16325 0.83 -1.1
12,777 + EX31_RS16325 0.83 -1.4
12,777 + EX31_RS16325 0.83 -0.2
12,812 + -0.2
12,812 + -0.2
12,933 + EX31_RS16330 0.34 -0.6
12,933 + EX31_RS16330 0.34 -0.6
12,933 + EX31_RS16330 0.34 -0.0
12,933 + EX31_RS16330 0.34 -0.1
12,933 + EX31_RS16330 0.34 +0.2
12,933 + EX31_RS16330 0.34 -0.5
12,933 + EX31_RS16330 0.34 -1.1
12,935 + EX31_RS16330 0.35 -1.3
12,955 + EX31_RS16330 0.41 -0.4
12,955 + EX31_RS16330 0.41 -2.1
12,955 + EX31_RS16330 0.41 -0.1
12,955 + EX31_RS16330 0.41 -0.6
13,009 + EX31_RS16330 0.57 +0.5
13,120 + +0.7
13,120 + +0.1
13,133 + -0.5
13,133 + -0.3
13,133 + -0.4
13,144 + +0.8
13,144 + -0.2
13,144 + +0.5
13,144 + +0.1
13,144 + -0.4
13,145 - -0.2
13,170 - +0.7
13,170 - +0.4
13,172 + +0.3
13,187 + -0.6
13,190 + +0.7
13,190 + +0.7
13,190 + -0.5
13,191 - -0.4
13,218 + +0.7
13,218 + -2.0
13,219 - -0.1
13,223 + -0.2
13,223 + -0.7
13,223 + -0.9
13,223 + -0.5
13,223 + +0.0
13,223 + +0.0
13,223 + +0.1
13,223 + -0.2
13,223 + +0.5
13,223 + +0.4
13,223 + -0.5
13,224 - +0.4
13,224 - -0.2
13,224 - -0.2
13,224 - -1.5
13,224 - -0.7
13,224 - +1.1
13,224 - -0.1
13,224 - +0.0
13,233 - +0.7
13,233 - -0.5
13,233 - -0.9
13,233 - +0.0
13,233 - -0.2
13,246 + -0.1
13,246 + +1.1
13,247 - -0.8
13,247 - +0.6
13,374 + -0.6
13,374 + -1.9
13,374 + -0.8
13,374 + -1.3
13,375 - -0.2
13,375 - +1.0
13,375 - +0.3
13,375 - +0.7
13,375 - -0.1
13,375 - -0.4
13,376 + -0.4
13,376 + +1.0
13,377 - +0.1
13,377 - -0.2
13,377 - +0.6
13,377 - +0.2
13,408 + EX31_RS16335 0.11 +0.7
13,486 + EX31_RS16335 0.33 +0.2
13,487 - EX31_RS16335 0.34 -0.4
13,487 - EX31_RS16335 0.34 +0.1
13,487 - EX31_RS16335 0.34 -0.4
13,532 - EX31_RS16335 0.47 -1.1
13,557 + EX31_RS16335 0.54 +0.2
13,558 - EX31_RS16335 0.54 -0.4
13,566 + EX31_RS16335 0.56 -0.0
13,620 + EX31_RS16335 0.72 -1.7
13,620 + EX31_RS16335 0.72 -0.2
13,620 + EX31_RS16335 0.72 +0.2
13,681 + EX31_RS16335 0.89 -1.3
13,682 - EX31_RS16335 0.90 +0.4
13,682 - EX31_RS16335 0.90 -0.2
13,699 + -0.9
13,699 + -0.2
13,699 + +1.2
13,699 + +0.1
13,699 + -1.4
13,700 - +0.5
13,700 - +0.1
13,700 - -0.6
13,700 - -0.6
13,700 - +0.5
13,700 - +0.2
13,700 - -0.8
13,700 - +1.3
13,700 - -0.1
13,700 - -0.6
13,700 - +0.8
13,716 - +0.1
13,724 + +0.2
13,791 + +0.3
13,791 + +0.7

Or see this region's nucleotide sequence