Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14105 and EX31_RS14110 are separated by 78 nucleotides EX31_RS14110 and EX31_RS14115 are separated by 152 nucleotides EX31_RS14115 and EX31_RS14120 are separated by 189 nucleotides
EX31_RS14105: EX31_RS14105 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 85,342 to 86,178
_RS14105
EX31_RS14110: EX31_RS14110 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 86,257 to 87,018
_RS14110
EX31_RS14115: EX31_RS14115 - metal-dependent hydrolase, at 87,171 to 87,728
_RS14115
EX31_RS14120: EX31_RS14120 - L-cystine transporter, at 87,918 to 89,309
_RS14120
Position (kb) 87
88 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 86.256 kb on + strand at 86.279 kb on + strand at 86.365 kb on - strand, within EX31_RS14110 at 86.420 kb on + strand, within EX31_RS14110 at 86.421 kb on - strand, within EX31_RS14110 at 86.512 kb on - strand, within EX31_RS14110 at 86.622 kb on + strand, within EX31_RS14110 at 86.622 kb on + strand, within EX31_RS14110 at 86.623 kb on - strand, within EX31_RS14110 at 86.623 kb on - strand, within EX31_RS14110 at 86.677 kb on - strand, within EX31_RS14110 at 86.682 kb on + strand, within EX31_RS14110 at 86.682 kb on + strand, within EX31_RS14110 at 86.683 kb on - strand, within EX31_RS14110 at 86.683 kb on - strand, within EX31_RS14110 at 86.691 kb on + strand, within EX31_RS14110 at 86.691 kb on + strand, within EX31_RS14110 at 86.692 kb on - strand, within EX31_RS14110 at 86.729 kb on - strand, within EX31_RS14110 at 86.731 kb on - strand, within EX31_RS14110 at 86.750 kb on + strand, within EX31_RS14110 at 86.750 kb on + strand, within EX31_RS14110 at 86.793 kb on + strand, within EX31_RS14110 at 86.793 kb on + strand, within EX31_RS14110 at 86.794 kb on - strand, within EX31_RS14110 at 86.824 kb on + strand, within EX31_RS14110 at 86.825 kb on - strand, within EX31_RS14110 at 86.826 kb on + strand, within EX31_RS14110 at 86.827 kb on - strand, within EX31_RS14110 at 86.968 kb on + strand at 87.221 kb on + strand at 87.291 kb on - strand, within EX31_RS14115 at 87.344 kb on + strand, within EX31_RS14115 at 87.345 kb on - strand, within EX31_RS14115 at 87.345 kb on - strand, within EX31_RS14115 at 87.521 kb on + strand, within EX31_RS14115 at 87.521 kb on + strand, within EX31_RS14115 at 87.522 kb on - strand, within EX31_RS14115 at 87.522 kb on - strand, within EX31_RS14115 at 87.603 kb on - strand, within EX31_RS14115 at 87.629 kb on + strand, within EX31_RS14115 at 87.741 kb on - strand at 87.764 kb on + strand at 87.807 kb on - strand at 87.810 kb on + strand at 87.811 kb on - strand at 87.811 kb on - strand at 87.899 kb on + strand at 87.901 kb on + strand at 87.943 kb on + strand at 87.943 kb on + strand at 87.944 kb on - strand at 88.042 kb on + strand at 88.068 kb on + strand, within EX31_RS14120 at 88.068 kb on + strand, within EX31_RS14120 at 88.068 kb on + strand, within EX31_RS14120 at 88.103 kb on + strand, within EX31_RS14120 at 88.104 kb on - strand, within EX31_RS14120 at 88.115 kb on + strand, within EX31_RS14120 at 88.131 kb on + strand, within EX31_RS14120 at 88.373 kb on + strand, within EX31_RS14120 at 88.374 kb on - strand, within EX31_RS14120 at 88.374 kb on - strand, within EX31_RS14120 at 88.377 kb on + strand, within EX31_RS14120 at 88.377 kb on + strand, within EX31_RS14120 at 88.377 kb on + strand, within EX31_RS14120 at 88.377 kb on + strand, within EX31_RS14120 at 88.377 kb on + strand, within EX31_RS14120 at 88.377 kb on + strand, within EX31_RS14120 at 88.377 kb on + strand, within EX31_RS14120 at 88.377 kb on + strand, within EX31_RS14120 at 88.377 kb on + strand, within EX31_RS14120 at 88.377 kb on + strand, within EX31_RS14120 at 88.378 kb on - strand, within EX31_RS14120 at 88.378 kb on - strand, within EX31_RS14120 at 88.427 kb on + strand, within EX31_RS14120 at 88.427 kb on + strand, within EX31_RS14120 at 88.428 kb on - strand, within EX31_RS14120 at 88.430 kb on - strand, within EX31_RS14120 at 88.430 kb on - strand, within EX31_RS14120 at 88.430 kb on - strand, within EX31_RS14120 at 88.433 kb on + strand, within EX31_RS14120 at 88.433 kb on + strand, within EX31_RS14120 at 88.433 kb on + strand, within EX31_RS14120 at 88.433 kb on + strand, within EX31_RS14120 at 88.433 kb on + strand, within EX31_RS14120 at 88.433 kb on + strand, within EX31_RS14120 at 88.433 kb on + strand, within EX31_RS14120 at 88.434 kb on - strand, within EX31_RS14120 at 88.434 kb on - strand, within EX31_RS14120 at 88.434 kb on - strand, within EX31_RS14120 at 88.434 kb on - strand, within EX31_RS14120 at 88.434 kb on - strand, within EX31_RS14120 at 88.434 kb on - strand, within EX31_RS14120 at 88.434 kb on - strand, within EX31_RS14120 at 88.691 kb on + strand, within EX31_RS14120 at 88.719 kb on + strand, within EX31_RS14120 at 88.720 kb on - strand, within EX31_RS14120
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 86,256 + -0.8 86,279 + +0.1 86,365 - EX31_RS14110 0.14 +1.4 86,420 + EX31_RS14110 0.21 +0.1 86,421 - EX31_RS14110 0.22 +1.1 86,512 - EX31_RS14110 0.33 +0.4 86,622 + EX31_RS14110 0.48 -0.2 86,622 + EX31_RS14110 0.48 +0.9 86,623 - EX31_RS14110 0.48 -0.4 86,623 - EX31_RS14110 0.48 +0.0 86,677 - EX31_RS14110 0.55 +1.4 86,682 + EX31_RS14110 0.56 +0.5 86,682 + EX31_RS14110 0.56 +0.0 86,683 - EX31_RS14110 0.56 -0.0 86,683 - EX31_RS14110 0.56 -0.0 86,691 + EX31_RS14110 0.57 -2.8 86,691 + EX31_RS14110 0.57 -0.1 86,692 - EX31_RS14110 0.57 -0.1 86,729 - EX31_RS14110 0.62 +1.0 86,731 - EX31_RS14110 0.62 -1.9 86,750 + EX31_RS14110 0.65 -1.0 86,750 + EX31_RS14110 0.65 -0.6 86,793 + EX31_RS14110 0.70 +0.0 86,793 + EX31_RS14110 0.70 -1.6 86,794 - EX31_RS14110 0.70 +0.0 86,824 + EX31_RS14110 0.74 -0.0 86,825 - EX31_RS14110 0.75 +0.3 86,826 + EX31_RS14110 0.75 +1.8 86,827 - EX31_RS14110 0.75 +0.5 86,968 + +0.3 87,221 + -0.2 87,291 - EX31_RS14115 0.22 +0.2 87,344 + EX31_RS14115 0.31 -1.1 87,345 - EX31_RS14115 0.31 -1.6 87,345 - EX31_RS14115 0.31 +0.3 87,521 + EX31_RS14115 0.63 -0.6 87,521 + EX31_RS14115 0.63 -2.0 87,522 - EX31_RS14115 0.63 -1.1 87,522 - EX31_RS14115 0.63 -0.2 87,603 - EX31_RS14115 0.77 +0.6 87,629 + EX31_RS14115 0.82 -0.9 87,741 - +0.4 87,764 + -1.2 87,807 - -0.4 87,810 + +0.8 87,811 - -0.3 87,811 - -0.4 87,899 + +0.2 87,901 + +1.3 87,943 + +0.0 87,943 + -0.1 87,944 - +1.6 88,042 + +0.4 88,068 + EX31_RS14120 0.11 +0.3 88,068 + EX31_RS14120 0.11 +0.4 88,068 + EX31_RS14120 0.11 -0.7 88,103 + EX31_RS14120 0.13 -0.8 88,104 - EX31_RS14120 0.13 -0.1 88,115 + EX31_RS14120 0.14 -0.1 88,131 + EX31_RS14120 0.15 -0.7 88,373 + EX31_RS14120 0.33 -0.3 88,374 - EX31_RS14120 0.33 +1.0 88,374 - EX31_RS14120 0.33 +1.5 88,377 + EX31_RS14120 0.33 +0.8 88,377 + EX31_RS14120 0.33 +0.4 88,377 + EX31_RS14120 0.33 +0.2 88,377 + EX31_RS14120 0.33 +1.7 88,377 + EX31_RS14120 0.33 -0.7 88,377 + EX31_RS14120 0.33 +0.3 88,377 + EX31_RS14120 0.33 +0.3 88,377 + EX31_RS14120 0.33 -1.6 88,377 + EX31_RS14120 0.33 +0.7 88,377 + EX31_RS14120 0.33 +0.7 88,378 - EX31_RS14120 0.33 -2.0 88,378 - EX31_RS14120 0.33 +1.1 88,427 + EX31_RS14120 0.37 -0.1 88,427 + EX31_RS14120 0.37 +0.0 88,428 - EX31_RS14120 0.37 -1.0 88,430 - EX31_RS14120 0.37 +0.1 88,430 - EX31_RS14120 0.37 -0.6 88,430 - EX31_RS14120 0.37 +1.0 88,433 + EX31_RS14120 0.37 -0.1 88,433 + EX31_RS14120 0.37 -1.0 88,433 + EX31_RS14120 0.37 -0.3 88,433 + EX31_RS14120 0.37 +0.7 88,433 + EX31_RS14120 0.37 +0.2 88,433 + EX31_RS14120 0.37 -1.3 88,433 + EX31_RS14120 0.37 -0.6 88,434 - EX31_RS14120 0.37 -0.2 88,434 - EX31_RS14120 0.37 -0.3 88,434 - EX31_RS14120 0.37 -1.4 88,434 - EX31_RS14120 0.37 +0.0 88,434 - EX31_RS14120 0.37 -0.6 88,434 - EX31_RS14120 0.37 +0.9 88,434 - EX31_RS14120 0.37 +0.9 88,691 + EX31_RS14120 0.56 -3.0 88,719 + EX31_RS14120 0.58 +0.2 88,720 - EX31_RS14120 0.58 -0.1
Or see this region's nucleotide sequence