Strain Fitness in Rahnella sp. WP5 around EX31_RS14095

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14090 and EX31_RS14095 are separated by 105 nucleotidesEX31_RS14095 and EX31_RS14100 are separated by 193 nucleotides EX31_RS14090: EX31_RS14090 - fructosamine kinase family protein, at 82,651 to 83,520 _RS14090 EX31_RS14095: EX31_RS14095 - yfeABCD regulator yfeE, at 83,626 to 84,174 _RS14095 EX31_RS14100: EX31_RS14100 - hexitol phosphatase HxpB, at 84,368 to 85,033 _RS14100 Position (kb) 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 82.647 kb on + strandat 82.647 kb on + strandat 82.648 kb on - strandat 82.688 kb on + strandat 82.688 kb on + strandat 82.689 kb on - strandat 82.760 kb on - strand, within EX31_RS14090at 82.809 kb on + strand, within EX31_RS14090at 82.809 kb on + strand, within EX31_RS14090at 82.886 kb on + strand, within EX31_RS14090at 82.886 kb on + strand, within EX31_RS14090at 82.886 kb on + strand, within EX31_RS14090at 82.886 kb on + strand, within EX31_RS14090at 82.887 kb on - strand, within EX31_RS14090at 82.887 kb on - strand, within EX31_RS14090at 82.887 kb on - strand, within EX31_RS14090at 82.887 kb on - strand, within EX31_RS14090at 82.891 kb on - strand, within EX31_RS14090at 82.924 kb on + strand, within EX31_RS14090at 82.924 kb on + strand, within EX31_RS14090at 82.925 kb on - strand, within EX31_RS14090at 82.925 kb on - strand, within EX31_RS14090at 82.925 kb on - strand, within EX31_RS14090at 82.953 kb on + strand, within EX31_RS14090at 82.953 kb on + strand, within EX31_RS14090at 82.953 kb on + strand, within EX31_RS14090at 82.953 kb on + strand, within EX31_RS14090at 82.953 kb on + strand, within EX31_RS14090at 82.953 kb on + strand, within EX31_RS14090at 82.953 kb on + strand, within EX31_RS14090at 82.953 kb on + strand, within EX31_RS14090at 82.954 kb on - strand, within EX31_RS14090at 82.954 kb on - strand, within EX31_RS14090at 82.954 kb on - strand, within EX31_RS14090at 82.954 kb on - strand, within EX31_RS14090at 82.954 kb on - strand, within EX31_RS14090at 82.961 kb on - strand, within EX31_RS14090at 83.144 kb on + strand, within EX31_RS14090at 83.144 kb on + strand, within EX31_RS14090at 83.144 kb on + strand, within EX31_RS14090at 83.145 kb on - strand, within EX31_RS14090at 83.145 kb on - strand, within EX31_RS14090at 83.145 kb on - strand, within EX31_RS14090at 83.145 kb on - strand, within EX31_RS14090at 83.151 kb on + strand, within EX31_RS14090at 83.164 kb on - strand, within EX31_RS14090at 83.164 kb on - strand, within EX31_RS14090at 83.330 kb on + strand, within EX31_RS14090at 83.330 kb on + strand, within EX31_RS14090at 83.330 kb on + strand, within EX31_RS14090at 83.331 kb on - strand, within EX31_RS14090at 83.333 kb on - strand, within EX31_RS14090at 83.354 kb on + strand, within EX31_RS14090at 83.354 kb on + strand, within EX31_RS14090at 83.355 kb on - strand, within EX31_RS14090at 83.355 kb on - strand, within EX31_RS14090at 83.356 kb on + strand, within EX31_RS14090at 83.357 kb on - strand, within EX31_RS14090at 83.373 kb on + strand, within EX31_RS14090at 83.373 kb on + strand, within EX31_RS14090at 83.375 kb on + strand, within EX31_RS14090at 83.417 kb on - strand, within EX31_RS14090at 83.417 kb on - strand, within EX31_RS14090at 83.417 kb on - strand, within EX31_RS14090at 83.423 kb on + strand, within EX31_RS14090at 83.423 kb on + strand, within EX31_RS14090at 83.423 kb on + strand, within EX31_RS14090at 83.423 kb on + strand, within EX31_RS14090at 83.423 kb on + strand, within EX31_RS14090at 83.424 kb on - strand, within EX31_RS14090at 83.424 kb on - strand, within EX31_RS14090at 83.424 kb on - strand, within EX31_RS14090at 83.424 kb on - strand, within EX31_RS14090at 83.425 kb on + strand, within EX31_RS14090at 83.425 kb on + strand, within EX31_RS14090at 83.425 kb on + strand, within EX31_RS14090at 83.425 kb on + strand, within EX31_RS14090at 83.426 kb on - strand, within EX31_RS14090at 83.428 kb on + strand, within EX31_RS14090at 83.428 kb on + strand, within EX31_RS14090at 83.429 kb on - strand, within EX31_RS14090at 83.450 kb on + strandat 83.502 kb on - strandat 83.502 kb on - strandat 83.511 kb on + strandat 83.512 kb on - strandat 83.549 kb on + strandat 83.568 kb on + strandat 83.569 kb on - strandat 83.611 kb on + strandat 83.612 kb on - strandat 83.612 kb on - strandat 83.612 kb on - strandat 83.612 kb on - strandat 83.679 kb on + strandat 83.694 kb on - strand, within EX31_RS14095at 83.705 kb on + strand, within EX31_RS14095at 83.797 kb on - strand, within EX31_RS14095at 83.891 kb on + strand, within EX31_RS14095at 83.891 kb on + strand, within EX31_RS14095at 83.891 kb on + strand, within EX31_RS14095at 83.891 kb on + strand, within EX31_RS14095at 83.892 kb on - strand, within EX31_RS14095at 83.892 kb on - strand, within EX31_RS14095at 83.892 kb on - strand, within EX31_RS14095at 83.895 kb on + strand, within EX31_RS14095at 83.896 kb on - strand, within EX31_RS14095at 83.957 kb on + strand, within EX31_RS14095at 83.957 kb on + strand, within EX31_RS14095at 83.958 kb on - strand, within EX31_RS14095at 84.054 kb on + strand, within EX31_RS14095at 84.167 kb on + strandat 84.167 kb on + strandat 84.168 kb on - strandat 84.168 kb on - strandat 84.189 kb on - strandat 84.197 kb on + strandat 84.198 kb on - strandat 84.329 kb on + strandat 84.342 kb on + strandat 84.342 kb on + strandat 84.343 kb on - strandat 84.346 kb on + strandat 84.346 kb on + strandat 84.346 kb on + strandat 84.346 kb on + strandat 84.347 kb on - strandat 84.374 kb on + strandat 84.375 kb on - strandat 84.375 kb on - strandat 84.388 kb on + strandat 84.421 kb on - strandat 84.485 kb on - strand, within EX31_RS14100at 84.512 kb on - strand, within EX31_RS14100at 84.551 kb on + strand, within EX31_RS14100at 84.727 kb on + strand, within EX31_RS14100at 84.728 kb on - strand, within EX31_RS14100at 84.759 kb on + strand, within EX31_RS14100at 84.760 kb on - strand, within EX31_RS14100at 84.772 kb on + strand, within EX31_RS14100at 84.827 kb on + strand, within EX31_RS14100at 84.827 kb on + strand, within EX31_RS14100at 84.828 kb on - strand, within EX31_RS14100at 84.849 kb on + strand, within EX31_RS14100at 84.849 kb on + strand, within EX31_RS14100at 84.850 kb on - strand, within EX31_RS14100at 84.953 kb on + strand, within EX31_RS14100at 84.953 kb on + strand, within EX31_RS14100at 84.953 kb on + strand, within EX31_RS14100at 84.953 kb on + strand, within EX31_RS14100at 84.953 kb on + strand, within EX31_RS14100at 84.953 kb on + strand, within EX31_RS14100at 84.954 kb on - strand, within EX31_RS14100at 84.954 kb on - strand, within EX31_RS14100at 84.954 kb on - strand, within EX31_RS14100at 85.091 kb on + strandat 85.091 kb on + strandat 85.092 kb on - strandat 85.093 kb on + strandat 85.094 kb on - strandat 85.094 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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82,647 + +0.2
82,647 + +0.5
82,648 - -0.1
82,688 + -2.0
82,688 + -1.0
82,689 - -0.4
82,760 - EX31_RS14090 0.13 +1.3
82,809 + EX31_RS14090 0.18 -0.5
82,809 + EX31_RS14090 0.18 +0.6
82,886 + EX31_RS14090 0.27 +0.9
82,886 + EX31_RS14090 0.27 +0.2
82,886 + EX31_RS14090 0.27 -0.2
82,886 + EX31_RS14090 0.27 -0.1
82,887 - EX31_RS14090 0.27 +0.1
82,887 - EX31_RS14090 0.27 +0.5
82,887 - EX31_RS14090 0.27 -1.2
82,887 - EX31_RS14090 0.27 -1.4
82,891 - EX31_RS14090 0.28 +0.8
82,924 + EX31_RS14090 0.31 -0.3
82,924 + EX31_RS14090 0.31 +0.5
82,925 - EX31_RS14090 0.31 -2.0
82,925 - EX31_RS14090 0.31 +0.1
82,925 - EX31_RS14090 0.31 -0.3
82,953 + EX31_RS14090 0.35 +1.8
82,953 + EX31_RS14090 0.35 -1.7
82,953 + EX31_RS14090 0.35 +0.3
82,953 + EX31_RS14090 0.35 -0.4
82,953 + EX31_RS14090 0.35 -0.5
82,953 + EX31_RS14090 0.35 +0.7
82,953 + EX31_RS14090 0.35 +0.4
82,953 + EX31_RS14090 0.35 +1.1
82,954 - EX31_RS14090 0.35 +0.4
82,954 - EX31_RS14090 0.35 +2.0
82,954 - EX31_RS14090 0.35 +0.6
82,954 - EX31_RS14090 0.35 -0.6
82,954 - EX31_RS14090 0.35 +0.7
82,961 - EX31_RS14090 0.36 +0.4
83,144 + EX31_RS14090 0.57 +0.1
83,144 + EX31_RS14090 0.57 -1.0
83,144 + EX31_RS14090 0.57 +0.0
83,145 - EX31_RS14090 0.57 -0.5
83,145 - EX31_RS14090 0.57 +1.0
83,145 - EX31_RS14090 0.57 -0.4
83,145 - EX31_RS14090 0.57 -0.1
83,151 + EX31_RS14090 0.57 -0.2
83,164 - EX31_RS14090 0.59 +0.1
83,164 - EX31_RS14090 0.59 +0.1
83,330 + EX31_RS14090 0.78 -0.8
83,330 + EX31_RS14090 0.78 +0.6
83,330 + EX31_RS14090 0.78 -0.5
83,331 - EX31_RS14090 0.78 +0.4
83,333 - EX31_RS14090 0.78 -0.3
83,354 + EX31_RS14090 0.81 -0.8
83,354 + EX31_RS14090 0.81 +0.5
83,355 - EX31_RS14090 0.81 -0.2
83,355 - EX31_RS14090 0.81 +0.0
83,356 + EX31_RS14090 0.81 -0.2
83,357 - EX31_RS14090 0.81 -1.2
83,373 + EX31_RS14090 0.83 -0.0
83,373 + EX31_RS14090 0.83 -0.0
83,375 + EX31_RS14090 0.83 -1.1
83,417 - EX31_RS14090 0.88 +0.1
83,417 - EX31_RS14090 0.88 +0.9
83,417 - EX31_RS14090 0.88 -0.7
83,423 + EX31_RS14090 0.89 -0.4
83,423 + EX31_RS14090 0.89 -0.7
83,423 + EX31_RS14090 0.89 -0.6
83,423 + EX31_RS14090 0.89 -0.2
83,423 + EX31_RS14090 0.89 +2.1
83,424 - EX31_RS14090 0.89 +0.6
83,424 - EX31_RS14090 0.89 -2.2
83,424 - EX31_RS14090 0.89 +0.3
83,424 - EX31_RS14090 0.89 -0.0
83,425 + EX31_RS14090 0.89 +0.4
83,425 + EX31_RS14090 0.89 +1.3
83,425 + EX31_RS14090 0.89 -0.2
83,425 + EX31_RS14090 0.89 +0.6
83,426 - EX31_RS14090 0.89 +0.4
83,428 + EX31_RS14090 0.89 -1.9
83,428 + EX31_RS14090 0.89 +0.7
83,429 - EX31_RS14090 0.89 +1.2
83,450 + +0.1
83,502 - -2.1
83,502 - +0.8
83,511 + +0.5
83,512 - +1.2
83,549 + -0.7
83,568 + -0.6
83,569 - +0.5
83,611 + +0.2
83,612 - -1.1
83,612 - +0.2
83,612 - -0.4
83,612 - -0.9
83,679 + +0.6
83,694 - EX31_RS14095 0.12 -1.3
83,705 + EX31_RS14095 0.14 -0.1
83,797 - EX31_RS14095 0.31 +0.3
83,891 + EX31_RS14095 0.48 -2.0
83,891 + EX31_RS14095 0.48 -2.9
83,891 + EX31_RS14095 0.48 -1.0
83,891 + EX31_RS14095 0.48 -2.1
83,892 - EX31_RS14095 0.48 -1.4
83,892 - EX31_RS14095 0.48 +0.6
83,892 - EX31_RS14095 0.48 -1.0
83,895 + EX31_RS14095 0.49 -0.6
83,896 - EX31_RS14095 0.49 +0.2
83,957 + EX31_RS14095 0.60 +0.8
83,957 + EX31_RS14095 0.60 +0.6
83,958 - EX31_RS14095 0.60 -0.8
84,054 + EX31_RS14095 0.78 -1.8
84,167 + -0.5
84,167 + +1.7
84,168 - +0.7
84,168 - -0.2
84,189 - -0.7
84,197 + +0.6
84,198 - -1.8
84,329 + -0.4
84,342 + -2.0
84,342 + -0.6
84,343 - -0.2
84,346 + +0.2
84,346 + -0.2
84,346 + +0.4
84,346 + -0.3
84,347 - -0.4
84,374 + -0.4
84,375 - +0.3
84,375 - +0.1
84,388 + -0.1
84,421 - +0.0
84,485 - EX31_RS14100 0.18 +0.8
84,512 - EX31_RS14100 0.22 -1.3
84,551 + EX31_RS14100 0.27 -0.4
84,727 + EX31_RS14100 0.54 -0.9
84,728 - EX31_RS14100 0.54 -0.2
84,759 + EX31_RS14100 0.59 +0.5
84,760 - EX31_RS14100 0.59 +1.4
84,772 + EX31_RS14100 0.61 -1.1
84,827 + EX31_RS14100 0.69 -0.3
84,827 + EX31_RS14100 0.69 -0.0
84,828 - EX31_RS14100 0.69 -0.8
84,849 + EX31_RS14100 0.72 +0.6
84,849 + EX31_RS14100 0.72 +0.3
84,850 - EX31_RS14100 0.72 +0.6
84,953 + EX31_RS14100 0.88 -0.6
84,953 + EX31_RS14100 0.88 -0.4
84,953 + EX31_RS14100 0.88 -1.2
84,953 + EX31_RS14100 0.88 -1.7
84,953 + EX31_RS14100 0.88 -0.0
84,953 + EX31_RS14100 0.88 -0.1
84,954 - EX31_RS14100 0.88 +0.2
84,954 - EX31_RS14100 0.88 +0.3
84,954 - EX31_RS14100 0.88 +0.8
85,091 + -0.2
85,091 + +0.6
85,092 - +0.3
85,093 + -0.2
85,094 - -0.1
85,094 - -0.9

Or see this region's nucleotide sequence