Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11395 and EX31_RS11400 are separated by 561 nucleotides EX31_RS11400 and EX31_RS11405 are separated by 82 nucleotides
EX31_RS11395: EX31_RS11395 - transcriptional regulator FtrA, at 211,156 to 212,169
_RS11395
EX31_RS11400: EX31_RS11400 - chemotaxis protein CheW, at 212,731 to 213,228
_RS11400
EX31_RS11405: EX31_RS11405 - chemotaxis protein CheA, at 213,311 to 215,353
_RS11405
Position (kb) 212
213
214 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 211.865 kb on + strand, within EX31_RS11395 at 211.865 kb on + strand, within EX31_RS11395 at 211.865 kb on + strand, within EX31_RS11395 at 211.882 kb on - strand, within EX31_RS11395 at 211.882 kb on - strand, within EX31_RS11395 at 211.968 kb on + strand, within EX31_RS11395 at 211.968 kb on + strand, within EX31_RS11395 at 212.295 kb on + strand at 212.392 kb on + strand at 212.392 kb on + strand at 212.392 kb on + strand at 212.453 kb on + strand at 212.487 kb on - strand at 212.733 kb on - strand at 212.733 kb on - strand at 212.791 kb on - strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.808 kb on + strand, within EX31_RS11400 at 212.809 kb on - strand, within EX31_RS11400 at 212.809 kb on - strand, within EX31_RS11400 at 212.809 kb on - strand, within EX31_RS11400 at 212.809 kb on - strand, within EX31_RS11400 at 212.955 kb on + strand, within EX31_RS11400 at 212.956 kb on - strand, within EX31_RS11400 at 212.956 kb on - strand, within EX31_RS11400 at 212.956 kb on - strand, within EX31_RS11400 at 212.956 kb on - strand, within EX31_RS11400 at 212.960 kb on - strand, within EX31_RS11400 at 212.960 kb on - strand, within EX31_RS11400 at 212.960 kb on - strand, within EX31_RS11400 at 212.984 kb on + strand, within EX31_RS11400 at 212.984 kb on + strand, within EX31_RS11400 at 212.985 kb on - strand, within EX31_RS11400 at 212.985 kb on - strand, within EX31_RS11400 at 213.063 kb on + strand, within EX31_RS11400 at 213.064 kb on - strand, within EX31_RS11400 at 213.081 kb on + strand, within EX31_RS11400 at 213.144 kb on - strand, within EX31_RS11400 at 213.162 kb on + strand, within EX31_RS11400 at 213.185 kb on - strand at 213.185 kb on - strand at 213.313 kb on - strand at 213.313 kb on - strand at 213.313 kb on - strand at 213.313 kb on - strand at 213.336 kb on - strand at 213.341 kb on - strand at 213.438 kb on + strand at 213.586 kb on - strand, within EX31_RS11405 at 213.586 kb on - strand, within EX31_RS11405 at 213.606 kb on + strand, within EX31_RS11405 at 213.607 kb on - strand, within EX31_RS11405 at 213.782 kb on - strand, within EX31_RS11405 at 213.992 kb on - strand, within EX31_RS11405 at 214.103 kb on - strand, within EX31_RS11405 at 214.142 kb on - strand, within EX31_RS11405 at 214.171 kb on + strand, within EX31_RS11405 at 214.172 kb on - strand, within EX31_RS11405 at 214.172 kb on - strand, within EX31_RS11405 at 214.172 kb on - strand, within EX31_RS11405 at 214.190 kb on - strand, within EX31_RS11405
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 211,865 + EX31_RS11395 0.70 +0.2 211,865 + EX31_RS11395 0.70 -0.7 211,865 + EX31_RS11395 0.70 -0.3 211,882 - EX31_RS11395 0.72 -1.4 211,882 - EX31_RS11395 0.72 -0.2 211,968 + EX31_RS11395 0.80 -0.9 211,968 + EX31_RS11395 0.80 -0.1 212,295 + -0.2 212,392 + +0.3 212,392 + +0.5 212,392 + +1.1 212,453 + +0.3 212,487 - -0.3 212,733 - -1.1 212,733 - +1.1 212,791 - EX31_RS11400 0.12 -0.0 212,808 + EX31_RS11400 0.15 -1.7 212,808 + EX31_RS11400 0.15 +0.5 212,808 + EX31_RS11400 0.15 -0.5 212,808 + EX31_RS11400 0.15 +0.6 212,808 + EX31_RS11400 0.15 +0.8 212,808 + EX31_RS11400 0.15 -0.6 212,809 - EX31_RS11400 0.16 -0.2 212,809 - EX31_RS11400 0.16 -0.8 212,809 - EX31_RS11400 0.16 +0.2 212,809 - EX31_RS11400 0.16 +0.7 212,955 + EX31_RS11400 0.45 -0.7 212,956 - EX31_RS11400 0.45 +0.3 212,956 - EX31_RS11400 0.45 +2.9 212,956 - EX31_RS11400 0.45 -2.2 212,956 - EX31_RS11400 0.45 -0.7 212,960 - EX31_RS11400 0.46 -1.0 212,960 - EX31_RS11400 0.46 +0.4 212,960 - EX31_RS11400 0.46 +0.1 212,984 + EX31_RS11400 0.51 -1.3 212,984 + EX31_RS11400 0.51 -0.9 212,985 - EX31_RS11400 0.51 -0.7 212,985 - EX31_RS11400 0.51 -0.2 213,063 + EX31_RS11400 0.67 -2.6 213,064 - EX31_RS11400 0.67 -0.5 213,081 + EX31_RS11400 0.70 +0.8 213,144 - EX31_RS11400 0.83 -2.1 213,162 + EX31_RS11400 0.87 -1.1 213,185 - +0.5 213,185 - +0.1 213,313 - -0.7 213,313 - +0.1 213,313 - +0.3 213,313 - -0.5 213,336 - +0.6 213,341 - +0.1 213,438 + +0.6 213,586 - EX31_RS11405 0.13 -2.3 213,586 - EX31_RS11405 0.13 -0.4 213,606 + EX31_RS11405 0.14 -0.1 213,607 - EX31_RS11405 0.14 +0.6 213,782 - EX31_RS11405 0.23 +0.2 213,992 - EX31_RS11405 0.33 +1.0 214,103 - EX31_RS11405 0.39 -0.1 214,142 - EX31_RS11405 0.41 -0.1 214,171 + EX31_RS11405 0.42 -2.5 214,172 - EX31_RS11405 0.42 +0.2 214,172 - EX31_RS11405 0.42 -0.0 214,172 - EX31_RS11405 0.42 +2.3 214,190 - EX31_RS11405 0.43 -0.1
Or see this region's nucleotide sequence