Strain Fitness in Rahnella sp. WP5 around EX31_RS11125

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11115 and EX31_RS11120 are separated by 13 nucleotidesEX31_RS11120 and EX31_RS11125 overlap by 4 nucleotidesEX31_RS11125 and EX31_RS11130 are separated by 4 nucleotidesEX31_RS11130 and EX31_RS11135 are separated by 25 nucleotides EX31_RS11115: EX31_RS11115 - creatininase family protein, at 153,307 to 154,188 _RS11115 EX31_RS11120: EX31_RS11120 - ABC transporter substrate-binding protein, at 154,202 to 155,185 _RS11120 EX31_RS11125: EX31_RS11125 - ABC transporter ATP-binding protein, at 155,182 to 156,009 _RS11125 EX31_RS11130: EX31_RS11130 - ABC transporter permease, at 156,014 to 156,829 _RS11130 EX31_RS11135: EX31_RS11135 - FAD-binding oxidoreductase, at 156,855 to 158,255 _RS11135 Position (kb) 155 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 154.226 kb on + strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.358 kb on + strand, within EX31_RS11120at 154.359 kb on - strand, within EX31_RS11120at 154.519 kb on - strand, within EX31_RS11120at 154.543 kb on + strand, within EX31_RS11120at 154.543 kb on + strand, within EX31_RS11120at 154.613 kb on + strand, within EX31_RS11120at 154.613 kb on + strand, within EX31_RS11120at 154.613 kb on + strand, within EX31_RS11120at 154.613 kb on + strand, within EX31_RS11120at 154.614 kb on - strand, within EX31_RS11120at 154.614 kb on - strand, within EX31_RS11120at 154.614 kb on - strand, within EX31_RS11120at 154.614 kb on - strand, within EX31_RS11120at 154.614 kb on - strand, within EX31_RS11120at 154.615 kb on + strand, within EX31_RS11120at 154.615 kb on + strand, within EX31_RS11120at 154.615 kb on + strand, within EX31_RS11120at 154.615 kb on + strand, within EX31_RS11120at 154.616 kb on - strand, within EX31_RS11120at 154.616 kb on - strand, within EX31_RS11120at 154.616 kb on - strand, within EX31_RS11120at 154.616 kb on - strand, within EX31_RS11120at 154.677 kb on - strand, within EX31_RS11120at 154.711 kb on + strand, within EX31_RS11120at 154.711 kb on + strand, within EX31_RS11120at 154.711 kb on + strand, within EX31_RS11120at 154.730 kb on + strand, within EX31_RS11120at 154.731 kb on - strand, within EX31_RS11120at 154.778 kb on + strand, within EX31_RS11120at 154.778 kb on + strand, within EX31_RS11120at 154.778 kb on + strand, within EX31_RS11120at 154.778 kb on + strand, within EX31_RS11120at 154.778 kb on + strand, within EX31_RS11120at 154.778 kb on + strand, within EX31_RS11120at 154.779 kb on - strand, within EX31_RS11120at 154.779 kb on - strand, within EX31_RS11120at 154.784 kb on + strand, within EX31_RS11120at 154.784 kb on + strand, within EX31_RS11120at 154.784 kb on + strand, within EX31_RS11120at 154.785 kb on - strand, within EX31_RS11120at 154.785 kb on - strand, within EX31_RS11120at 154.785 kb on - strand, within EX31_RS11120at 154.785 kb on - strand, within EX31_RS11120at 154.828 kb on + strand, within EX31_RS11120at 154.828 kb on + strand, within EX31_RS11120at 154.828 kb on + strand, within EX31_RS11120at 154.829 kb on - strand, within EX31_RS11120at 154.910 kb on + strand, within EX31_RS11120at 154.910 kb on + strand, within EX31_RS11120at 154.942 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.009 kb on + strand, within EX31_RS11120at 155.010 kb on - strand, within EX31_RS11120at 155.010 kb on - strand, within EX31_RS11120at 155.144 kb on + strandat 155.144 kb on + strandat 155.144 kb on + strandat 155.144 kb on + strandat 155.144 kb on + strandat 155.144 kb on + strandat 155.144 kb on + strandat 155.144 kb on + strandat 155.145 kb on - strandat 155.145 kb on - strandat 155.145 kb on - strandat 155.145 kb on - strandat 155.145 kb on - strandat 155.145 kb on - strandat 155.145 kb on - strandat 155.146 kb on + strandat 155.146 kb on + strandat 155.177 kb on - strandat 155.513 kb on + strand, within EX31_RS11125at 155.513 kb on + strand, within EX31_RS11125at 155.513 kb on + strand, within EX31_RS11125at 155.514 kb on - strand, within EX31_RS11125at 155.568 kb on + strand, within EX31_RS11125at 155.571 kb on + strand, within EX31_RS11125at 155.571 kb on + strand, within EX31_RS11125at 156.102 kb on + strand, within EX31_RS11130at 156.102 kb on + strand, within EX31_RS11130at 156.102 kb on + strand, within EX31_RS11130at 156.103 kb on - strand, within EX31_RS11130at 156.103 kb on - strand, within EX31_RS11130at 156.103 kb on - strand, within EX31_RS11130at 156.125 kb on + strand, within EX31_RS11130at 156.126 kb on - strand, within EX31_RS11130at 156.126 kb on - strand, within EX31_RS11130at 156.197 kb on - strand, within EX31_RS11130at 156.451 kb on + strand, within EX31_RS11130at 156.498 kb on - strand, within EX31_RS11130at 156.653 kb on - strand, within EX31_RS11130at 156.676 kb on - strand, within EX31_RS11130at 156.854 kb on + strandat 156.854 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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154,226 + +1.0
154,227 - +0.7
154,227 - +2.1
154,227 - -1.3
154,227 - +0.0
154,227 - -0.1
154,227 - -1.6
154,227 - +0.5
154,227 - -0.5
154,358 + EX31_RS11120 0.16 +0.5
154,359 - EX31_RS11120 0.16 -1.2
154,519 - EX31_RS11120 0.32 -2.5
154,543 + EX31_RS11120 0.35 -0.1
154,543 + EX31_RS11120 0.35 -0.6
154,613 + EX31_RS11120 0.42 -0.5
154,613 + EX31_RS11120 0.42 +0.1
154,613 + EX31_RS11120 0.42 -0.1
154,613 + EX31_RS11120 0.42 +1.2
154,614 - EX31_RS11120 0.42 +1.0
154,614 - EX31_RS11120 0.42 -0.5
154,614 - EX31_RS11120 0.42 +0.3
154,614 - EX31_RS11120 0.42 -0.3
154,614 - EX31_RS11120 0.42 -0.7
154,615 + EX31_RS11120 0.42 -0.4
154,615 + EX31_RS11120 0.42 -0.7
154,615 + EX31_RS11120 0.42 +0.8
154,615 + EX31_RS11120 0.42 +0.7
154,616 - EX31_RS11120 0.42 +0.9
154,616 - EX31_RS11120 0.42 -0.9
154,616 - EX31_RS11120 0.42 +1.7
154,616 - EX31_RS11120 0.42 -0.2
154,677 - EX31_RS11120 0.48 +1.2
154,711 + EX31_RS11120 0.52 +0.8
154,711 + EX31_RS11120 0.52 -0.2
154,711 + EX31_RS11120 0.52 +0.7
154,730 + EX31_RS11120 0.54 -1.0
154,731 - EX31_RS11120 0.54 -0.7
154,778 + EX31_RS11120 0.59 -0.3
154,778 + EX31_RS11120 0.59 +0.2
154,778 + EX31_RS11120 0.59 +1.1
154,778 + EX31_RS11120 0.59 -0.2
154,778 + EX31_RS11120 0.59 +0.7
154,778 + EX31_RS11120 0.59 +0.3
154,779 - EX31_RS11120 0.59 +1.3
154,779 - EX31_RS11120 0.59 -2.4
154,784 + EX31_RS11120 0.59 +0.5
154,784 + EX31_RS11120 0.59 +0.2
154,784 + EX31_RS11120 0.59 -0.2
154,785 - EX31_RS11120 0.59 +0.4
154,785 - EX31_RS11120 0.59 +1.2
154,785 - EX31_RS11120 0.59 +0.2
154,785 - EX31_RS11120 0.59 -0.5
154,828 + EX31_RS11120 0.64 -0.7
154,828 + EX31_RS11120 0.64 -1.0
154,828 + EX31_RS11120 0.64 +0.7
154,829 - EX31_RS11120 0.64 +0.9
154,910 + EX31_RS11120 0.72 +1.2
154,910 + EX31_RS11120 0.72 +0.3
154,942 + EX31_RS11120 0.75 +1.3
155,009 + EX31_RS11120 0.82 +0.3
155,009 + EX31_RS11120 0.82 -0.2
155,009 + EX31_RS11120 0.82 +0.2
155,009 + EX31_RS11120 0.82 -0.4
155,009 + EX31_RS11120 0.82 -1.0
155,009 + EX31_RS11120 0.82 -0.3
155,009 + EX31_RS11120 0.82 +0.2
155,009 + EX31_RS11120 0.82 +1.6
155,009 + EX31_RS11120 0.82 +0.7
155,009 + EX31_RS11120 0.82 +0.6
155,009 + EX31_RS11120 0.82 +1.2
155,009 + EX31_RS11120 0.82 +0.1
155,010 - EX31_RS11120 0.82 -0.4
155,010 - EX31_RS11120 0.82 +0.3
155,144 + -0.2
155,144 + +0.6
155,144 + -0.1
155,144 + +0.9
155,144 + +0.6
155,144 + -0.1
155,144 + -0.8
155,144 + +1.2
155,145 - -0.4
155,145 - -0.0
155,145 - -0.1
155,145 - +0.2
155,145 - -0.2
155,145 - +0.5
155,145 - +0.5
155,146 + -0.6
155,146 + -0.7
155,177 - -0.5
155,513 + EX31_RS11125 0.40 +0.5
155,513 + EX31_RS11125 0.40 -1.1
155,513 + EX31_RS11125 0.40 +0.9
155,514 - EX31_RS11125 0.40 -2.5
155,568 + EX31_RS11125 0.47 -0.8
155,571 + EX31_RS11125 0.47 -3.3
155,571 + EX31_RS11125 0.47 -0.7
156,102 + EX31_RS11130 0.11 +0.2
156,102 + EX31_RS11130 0.11 +1.9
156,102 + EX31_RS11130 0.11 +1.4
156,103 - EX31_RS11130 0.11 +0.0
156,103 - EX31_RS11130 0.11 -1.6
156,103 - EX31_RS11130 0.11 +0.2
156,125 + EX31_RS11130 0.14 +3.5
156,126 - EX31_RS11130 0.14 -0.8
156,126 - EX31_RS11130 0.14 -0.6
156,197 - EX31_RS11130 0.22 -0.8
156,451 + EX31_RS11130 0.54 +0.9
156,498 - EX31_RS11130 0.59 +0.2
156,653 - EX31_RS11130 0.78 +0.1
156,676 - EX31_RS11130 0.81 -1.0
156,854 + -1.4
156,854 + +0.6

Or see this region's nucleotide sequence