Strain Fitness in Rahnella sp. WP5 around EX31_RS10750

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10740 and EX31_RS10745 are separated by 127 nucleotidesEX31_RS10745 and EX31_RS10750 overlap by 1 nucleotidesEX31_RS10750 and EX31_RS10755 are separated by 94 nucleotides EX31_RS10740: EX31_RS10740 - LysR family transcriptional regulator, at 63,845 to 64,764 _RS10740 EX31_RS10745: EX31_RS10745 - chromate transporter, at 64,892 to 65,476 _RS10745 EX31_RS10750: EX31_RS10750 - chromate transporter, at 65,476 to 65,994 _RS10750 EX31_RS10755: EX31_RS10755 - glycoside hydrolase family 3 protein, at 66,089 to 68,050 _RS10755 Position (kb) 65 66Strain fitness (log2 ratio) -2 -1 0 1 2at 64.618 kb on + strand, within EX31_RS10740at 64.619 kb on - strand, within EX31_RS10740at 64.655 kb on - strand, within EX31_RS10740at 64.655 kb on - strand, within EX31_RS10740at 64.655 kb on - strand, within EX31_RS10740at 64.708 kb on - strandat 64.732 kb on - strandat 64.764 kb on + strandat 64.764 kb on + strandat 64.765 kb on - strandat 64.765 kb on - strandat 64.770 kb on + strandat 64.771 kb on - strandat 64.771 kb on - strandat 64.771 kb on - strandat 64.771 kb on - strandat 64.797 kb on + strandat 64.806 kb on + strandat 64.806 kb on + strandat 64.849 kb on + strandat 64.849 kb on + strandat 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.234 kb on + strand, within EX31_RS10745at 65.235 kb on - strand, within EX31_RS10745at 65.304 kb on + strand, within EX31_RS10745at 65.304 kb on + strand, within EX31_RS10745at 65.382 kb on + strand, within EX31_RS10745at 65.468 kb on - strandat 65.486 kb on + strandat 65.509 kb on - strandat 65.545 kb on - strand, within EX31_RS10750at 65.652 kb on + strand, within EX31_RS10750at 65.746 kb on - strand, within EX31_RS10750at 65.746 kb on - strand, within EX31_RS10750at 65.801 kb on + strand, within EX31_RS10750at 65.855 kb on + strand, within EX31_RS10750at 65.914 kb on - strand, within EX31_RS10750at 66.033 kb on + strandat 66.033 kb on + strandat 66.033 kb on + strandat 66.034 kb on - strandat 66.034 kb on - strandat 66.063 kb on - strandat 66.063 kb on - strandat 66.064 kb on + strandat 66.064 kb on + strandat 66.213 kb on + strandat 66.213 kb on + strandat 66.214 kb on - strandat 66.254 kb on + strandat 66.254 kb on + strandat 66.418 kb on + strand, within EX31_RS10755at 66.573 kb on - strand, within EX31_RS10755at 66.589 kb on + strand, within EX31_RS10755at 66.628 kb on - strand, within EX31_RS10755at 66.763 kb on + strand, within EX31_RS10755at 66.764 kb on - strand, within EX31_RS10755at 66.803 kb on - strand, within EX31_RS10755at 66.803 kb on - strand, within EX31_RS10755at 66.852 kb on + strand, within EX31_RS10755at 66.984 kb on - strand, within EX31_RS10755

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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64,618 + EX31_RS10740 0.84 -0.7
64,619 - EX31_RS10740 0.84 +0.8
64,655 - EX31_RS10740 0.88 +0.0
64,655 - EX31_RS10740 0.88 -0.6
64,655 - EX31_RS10740 0.88 -0.1
64,708 - -1.8
64,732 - -0.7
64,764 + -0.4
64,764 + -0.5
64,765 - -0.1
64,765 - -0.5
64,770 + -0.9
64,771 - -1.3
64,771 - -0.6
64,771 - -0.2
64,771 - +0.4
64,797 + -0.4
64,806 + +0.1
64,806 + +0.3
64,849 + +0.3
64,849 + +1.4
65,234 + EX31_RS10745 0.58 -1.2
65,234 + EX31_RS10745 0.58 +0.0
65,234 + EX31_RS10745 0.58 -2.5
65,234 + EX31_RS10745 0.58 +1.6
65,234 + EX31_RS10745 0.58 -0.7
65,234 + EX31_RS10745 0.58 -1.1
65,234 + EX31_RS10745 0.58 -0.9
65,234 + EX31_RS10745 0.58 -0.0
65,234 + EX31_RS10745 0.58 -1.1
65,235 - EX31_RS10745 0.59 -0.2
65,304 + EX31_RS10745 0.70 -2.4
65,304 + EX31_RS10745 0.70 +0.5
65,382 + EX31_RS10745 0.84 +0.0
65,468 - -0.6
65,486 + +0.9
65,509 - +0.7
65,545 - EX31_RS10750 0.13 -0.2
65,652 + EX31_RS10750 0.34 +0.1
65,746 - EX31_RS10750 0.52 -0.9
65,746 - EX31_RS10750 0.52 -0.5
65,801 + EX31_RS10750 0.63 -0.1
65,855 + EX31_RS10750 0.73 +0.1
65,914 - EX31_RS10750 0.84 -0.8
66,033 + -0.1
66,033 + -0.2
66,033 + -1.1
66,034 - -0.2
66,034 - +2.1
66,063 - +1.4
66,063 - +0.5
66,064 + -0.7
66,064 + -0.7
66,213 + -0.8
66,213 + +0.8
66,214 - -0.9
66,254 + -0.4
66,254 + +1.0
66,418 + EX31_RS10755 0.17 +0.1
66,573 - EX31_RS10755 0.25 +0.2
66,589 + EX31_RS10755 0.25 +0.1
66,628 - EX31_RS10755 0.27 +0.4
66,763 + EX31_RS10755 0.34 -1.2
66,764 - EX31_RS10755 0.34 -0.6
66,803 - EX31_RS10755 0.36 +0.9
66,803 - EX31_RS10755 0.36 -0.2
66,852 + EX31_RS10755 0.39 -0.4
66,984 - EX31_RS10755 0.46 -0.1

Or see this region's nucleotide sequence