Strain Fitness in Rahnella sp. WP5 around EX31_RS10735

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10730 and EX31_RS10735 are separated by 237 nucleotidesEX31_RS10735 and EX31_RS10740 overlap by 4 nucleotides EX31_RS10730: EX31_RS10730 - elongation factor G, at 61,152 to 63,257 _RS10730 EX31_RS10735: EX31_RS10735 - helix-turn-helix transcriptional regulator, at 63,495 to 63,848 _RS10735 EX31_RS10740: EX31_RS10740 - LysR family transcriptional regulator, at 63,845 to 64,764 _RS10740 Position (kb) 63 64Strain fitness (log2 ratio) -3 -2 -1 0 1at 62.548 kb on + strand, within EX31_RS10730at 62.549 kb on - strand, within EX31_RS10730at 62.549 kb on - strand, within EX31_RS10730at 62.570 kb on + strand, within EX31_RS10730at 62.647 kb on + strand, within EX31_RS10730at 62.648 kb on - strand, within EX31_RS10730at 62.648 kb on - strand, within EX31_RS10730at 62.652 kb on - strand, within EX31_RS10730at 62.660 kb on + strand, within EX31_RS10730at 62.660 kb on + strand, within EX31_RS10730at 62.661 kb on - strand, within EX31_RS10730at 62.861 kb on - strand, within EX31_RS10730at 62.861 kb on - strand, within EX31_RS10730at 62.861 kb on - strand, within EX31_RS10730at 62.861 kb on - strand, within EX31_RS10730at 62.864 kb on + strand, within EX31_RS10730at 62.920 kb on + strand, within EX31_RS10730at 62.920 kb on + strand, within EX31_RS10730at 62.921 kb on - strand, within EX31_RS10730at 62.921 kb on - strand, within EX31_RS10730at 62.921 kb on - strand, within EX31_RS10730at 62.921 kb on - strand, within EX31_RS10730at 62.921 kb on - strand, within EX31_RS10730at 62.921 kb on - strand, within EX31_RS10730at 62.921 kb on - strand, within EX31_RS10730at 63.002 kb on + strand, within EX31_RS10730at 63.002 kb on + strand, within EX31_RS10730at 63.002 kb on + strand, within EX31_RS10730at 63.003 kb on - strand, within EX31_RS10730at 63.003 kb on - strand, within EX31_RS10730at 63.003 kb on - strand, within EX31_RS10730at 63.006 kb on - strand, within EX31_RS10730at 63.006 kb on - strand, within EX31_RS10730at 63.069 kb on - strandat 63.069 kb on - strandat 63.069 kb on - strandat 63.069 kb on - strandat 63.143 kb on + strandat 63.143 kb on + strandat 63.161 kb on - strandat 63.161 kb on - strandat 63.170 kb on + strandat 63.170 kb on + strandat 63.171 kb on - strandat 63.171 kb on - strandat 63.191 kb on + strandat 63.216 kb on - strandat 63.257 kb on + strandat 63.257 kb on + strandat 63.257 kb on + strandat 63.257 kb on + strandat 63.257 kb on + strandat 63.257 kb on + strandat 63.257 kb on + strandat 63.257 kb on + strandat 63.258 kb on - strandat 63.258 kb on - strandat 63.258 kb on - strandat 63.258 kb on - strandat 63.258 kb on - strandat 63.258 kb on - strandat 63.258 kb on - strandat 63.258 kb on - strandat 63.258 kb on - strandat 63.259 kb on + strandat 63.259 kb on + strandat 63.259 kb on + strandat 63.259 kb on + strandat 63.259 kb on + strandat 63.259 kb on + strandat 63.259 kb on + strandat 63.260 kb on - strandat 63.269 kb on - strandat 63.282 kb on + strandat 63.321 kb on + strandat 63.321 kb on + strandat 63.322 kb on - strandat 63.322 kb on - strandat 63.322 kb on - strandat 63.322 kb on - strandat 63.322 kb on - strandat 63.322 kb on - strandat 63.322 kb on - strandat 63.322 kb on - strandat 63.329 kb on - strandat 63.332 kb on - strandat 63.354 kb on + strandat 63.354 kb on + strandat 63.358 kb on - strandat 63.374 kb on - strandat 63.396 kb on - strandat 63.428 kb on + strandat 63.428 kb on + strandat 63.449 kb on + strandat 63.449 kb on + strandat 63.449 kb on + strandat 63.449 kb on + strandat 63.449 kb on + strandat 63.449 kb on + strandat 63.450 kb on - strandat 63.450 kb on - strandat 63.450 kb on - strandat 63.450 kb on - strandat 63.451 kb on + strandat 63.483 kb on + strandat 63.483 kb on + strandat 63.494 kb on + strandat 63.494 kb on + strandat 63.494 kb on + strandat 63.494 kb on + strandat 63.494 kb on + strandat 63.495 kb on - strandat 63.558 kb on - strand, within EX31_RS10735at 63.584 kb on + strand, within EX31_RS10735at 63.622 kb on + strand, within EX31_RS10735at 63.622 kb on + strand, within EX31_RS10735at 63.625 kb on + strand, within EX31_RS10735at 63.625 kb on + strand, within EX31_RS10735at 63.667 kb on + strand, within EX31_RS10735at 63.667 kb on + strand, within EX31_RS10735at 63.803 kb on + strand, within EX31_RS10735at 63.804 kb on - strand, within EX31_RS10735at 63.804 kb on - strand, within EX31_RS10735at 63.804 kb on - strand, within EX31_RS10735at 63.893 kb on + strandat 63.894 kb on - strandat 63.931 kb on - strandat 63.931 kb on - strandat 63.933 kb on - strandat 63.933 kb on - strandat 63.974 kb on + strand, within EX31_RS10740at 64.019 kb on - strand, within EX31_RS10740at 64.019 kb on - strand, within EX31_RS10740at 64.062 kb on - strand, within EX31_RS10740at 64.085 kb on - strand, within EX31_RS10740at 64.110 kb on + strand, within EX31_RS10740at 64.110 kb on + strand, within EX31_RS10740at 64.110 kb on + strand, within EX31_RS10740at 64.111 kb on - strand, within EX31_RS10740at 64.111 kb on - strand, within EX31_RS10740at 64.111 kb on - strand, within EX31_RS10740at 64.131 kb on + strand, within EX31_RS10740at 64.132 kb on - strand, within EX31_RS10740at 64.132 kb on - strand, within EX31_RS10740at 64.158 kb on + strand, within EX31_RS10740at 64.158 kb on + strand, within EX31_RS10740at 64.158 kb on + strand, within EX31_RS10740at 64.159 kb on - strand, within EX31_RS10740at 64.160 kb on + strand, within EX31_RS10740at 64.160 kb on + strand, within EX31_RS10740at 64.161 kb on - strand, within EX31_RS10740at 64.163 kb on + strand, within EX31_RS10740at 64.164 kb on - strand, within EX31_RS10740at 64.164 kb on - strand, within EX31_RS10740at 64.164 kb on - strand, within EX31_RS10740at 64.164 kb on - strand, within EX31_RS10740at 64.292 kb on - strand, within EX31_RS10740at 64.302 kb on + strand, within EX31_RS10740at 64.303 kb on - strand, within EX31_RS10740at 64.303 kb on - strand, within EX31_RS10740at 64.449 kb on + strand, within EX31_RS10740at 64.450 kb on - strand, within EX31_RS10740at 64.450 kb on - strand, within EX31_RS10740at 64.618 kb on + strand, within EX31_RS10740at 64.619 kb on - strand, within EX31_RS10740at 64.655 kb on - strand, within EX31_RS10740at 64.655 kb on - strand, within EX31_RS10740at 64.655 kb on - strand, within EX31_RS10740at 64.708 kb on - strandat 64.732 kb on - strandat 64.764 kb on + strandat 64.764 kb on + strandat 64.765 kb on - strandat 64.765 kb on - strandat 64.770 kb on + strandat 64.771 kb on - strandat 64.771 kb on - strandat 64.771 kb on - strandat 64.771 kb on - strandat 64.797 kb on + strandat 64.806 kb on + strandat 64.806 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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62,548 + EX31_RS10730 0.66 -0.1
62,549 - EX31_RS10730 0.66 -1.1
62,549 - EX31_RS10730 0.66 +0.4
62,570 + EX31_RS10730 0.67 -0.9
62,647 + EX31_RS10730 0.71 -0.2
62,648 - EX31_RS10730 0.71 +0.7
62,648 - EX31_RS10730 0.71 -1.8
62,652 - EX31_RS10730 0.71 +0.1
62,660 + EX31_RS10730 0.72 +0.5
62,660 + EX31_RS10730 0.72 +1.4
62,661 - EX31_RS10730 0.72 -1.0
62,861 - EX31_RS10730 0.81 -0.3
62,861 - EX31_RS10730 0.81 +0.2
62,861 - EX31_RS10730 0.81 +0.8
62,861 - EX31_RS10730 0.81 -0.5
62,864 + EX31_RS10730 0.81 +0.3
62,920 + EX31_RS10730 0.84 -1.4
62,920 + EX31_RS10730 0.84 -0.9
62,921 - EX31_RS10730 0.84 -0.3
62,921 - EX31_RS10730 0.84 +0.7
62,921 - EX31_RS10730 0.84 +0.6
62,921 - EX31_RS10730 0.84 +0.9
62,921 - EX31_RS10730 0.84 +0.1
62,921 - EX31_RS10730 0.84 -0.3
62,921 - EX31_RS10730 0.84 +0.2
63,002 + EX31_RS10730 0.88 +0.4
63,002 + EX31_RS10730 0.88 -0.7
63,002 + EX31_RS10730 0.88 +0.3
63,003 - EX31_RS10730 0.88 -1.8
63,003 - EX31_RS10730 0.88 +0.4
63,003 - EX31_RS10730 0.88 +0.8
63,006 - EX31_RS10730 0.88 +0.0
63,006 - EX31_RS10730 0.88 -0.1
63,069 - -0.4
63,069 - +1.3
63,069 - +0.5
63,069 - +0.2
63,143 + +0.1
63,143 + +0.6
63,161 - +0.5
63,161 - +0.8
63,170 + +0.3
63,170 + +0.5
63,171 - +0.3
63,171 - -1.1
63,191 + -0.1
63,216 - +0.2
63,257 + -0.1
63,257 + -1.4
63,257 + -1.6
63,257 + +0.3
63,257 + +0.7
63,257 + -1.0
63,257 + -0.4
63,257 + +1.1
63,258 - +0.4
63,258 - +0.5
63,258 - +1.1
63,258 - -0.2
63,258 - -0.1
63,258 - -0.5
63,258 - +0.2
63,258 - +0.5
63,258 - -0.6
63,259 + -1.5
63,259 + -0.6
63,259 + -1.8
63,259 + -0.9
63,259 + -0.3
63,259 + -0.5
63,259 + +0.8
63,260 - +1.1
63,269 - -0.5
63,282 + +1.0
63,321 + +0.2
63,321 + +1.4
63,322 - -0.7
63,322 - +1.4
63,322 - +0.1
63,322 - +1.0
63,322 - +0.1
63,322 - -0.1
63,322 - +0.4
63,322 - +0.7
63,329 - +0.1
63,332 - +0.3
63,354 + -2.9
63,354 + +1.6
63,358 - +0.6
63,374 - +0.4
63,396 - +0.3
63,428 + -0.4
63,428 + +1.1
63,449 + +1.1
63,449 + -0.8
63,449 + +0.1
63,449 + -0.0
63,449 + -1.1
63,449 + +0.4
63,450 - -0.0
63,450 - -1.6
63,450 - -0.4
63,450 - +1.3
63,451 + -0.6
63,483 + +0.1
63,483 + -0.0
63,494 + -0.6
63,494 + -0.5
63,494 + +1.1
63,494 + +0.2
63,494 + -1.0
63,495 - -0.8
63,558 - EX31_RS10735 0.18 -0.4
63,584 + EX31_RS10735 0.25 -0.3
63,622 + EX31_RS10735 0.36 -0.9
63,622 + EX31_RS10735 0.36 -0.7
63,625 + EX31_RS10735 0.37 +1.2
63,625 + EX31_RS10735 0.37 -0.1
63,667 + EX31_RS10735 0.49 -0.5
63,667 + EX31_RS10735 0.49 -1.3
63,803 + EX31_RS10735 0.87 -0.1
63,804 - EX31_RS10735 0.87 +0.7
63,804 - EX31_RS10735 0.87 -2.0
63,804 - EX31_RS10735 0.87 -1.4
63,893 + +0.2
63,894 - +0.2
63,931 - -0.1
63,931 - -0.8
63,933 - -1.3
63,933 - -2.2
63,974 + EX31_RS10740 0.14 +1.1
64,019 - EX31_RS10740 0.19 +0.3
64,019 - EX31_RS10740 0.19 +0.1
64,062 - EX31_RS10740 0.24 -1.7
64,085 - EX31_RS10740 0.26 -1.2
64,110 + EX31_RS10740 0.29 -2.2
64,110 + EX31_RS10740 0.29 -1.0
64,110 + EX31_RS10740 0.29 -0.4
64,111 - EX31_RS10740 0.29 +0.5
64,111 - EX31_RS10740 0.29 -0.7
64,111 - EX31_RS10740 0.29 -1.1
64,131 + EX31_RS10740 0.31 +0.3
64,132 - EX31_RS10740 0.31 +0.6
64,132 - EX31_RS10740 0.31 -1.7
64,158 + EX31_RS10740 0.34 -0.8
64,158 + EX31_RS10740 0.34 -0.5
64,158 + EX31_RS10740 0.34 -0.5
64,159 - EX31_RS10740 0.34 -0.0
64,160 + EX31_RS10740 0.34 -1.2
64,160 + EX31_RS10740 0.34 +0.7
64,161 - EX31_RS10740 0.34 +0.5
64,163 + EX31_RS10740 0.35 -0.6
64,164 - EX31_RS10740 0.35 -0.2
64,164 - EX31_RS10740 0.35 -2.1
64,164 - EX31_RS10740 0.35 -0.5
64,164 - EX31_RS10740 0.35 -0.4
64,292 - EX31_RS10740 0.49 -0.4
64,302 + EX31_RS10740 0.50 -0.0
64,303 - EX31_RS10740 0.50 -1.5
64,303 - EX31_RS10740 0.50 -1.3
64,449 + EX31_RS10740 0.66 +1.4
64,450 - EX31_RS10740 0.66 -0.1
64,450 - EX31_RS10740 0.66 +0.5
64,618 + EX31_RS10740 0.84 -0.7
64,619 - EX31_RS10740 0.84 +0.8
64,655 - EX31_RS10740 0.88 +0.0
64,655 - EX31_RS10740 0.88 -0.6
64,655 - EX31_RS10740 0.88 -0.1
64,708 - -1.8
64,732 - -0.7
64,764 + -0.4
64,764 + -0.5
64,765 - -0.1
64,765 - -0.5
64,770 + -0.9
64,771 - -1.3
64,771 - -0.6
64,771 - -0.2
64,771 - +0.4
64,797 + -0.4
64,806 + +0.1
64,806 + +0.3

Or see this region's nucleotide sequence