Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10730 and EX31_RS10735 are separated by 237 nucleotides EX31_RS10735 and EX31_RS10740 overlap by 4 nucleotides
EX31_RS10730: EX31_RS10730 - elongation factor G, at 61,152 to 63,257
_RS10730
EX31_RS10735: EX31_RS10735 - helix-turn-helix transcriptional regulator, at 63,495 to 63,848
_RS10735
EX31_RS10740: EX31_RS10740 - LysR family transcriptional regulator, at 63,845 to 64,764
_RS10740
Position (kb) 63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 62.548 kb on + strand, within EX31_RS10730 at 62.549 kb on - strand, within EX31_RS10730 at 62.549 kb on - strand, within EX31_RS10730 at 62.570 kb on + strand, within EX31_RS10730 at 62.647 kb on + strand, within EX31_RS10730 at 62.648 kb on - strand, within EX31_RS10730 at 62.648 kb on - strand, within EX31_RS10730 at 62.652 kb on - strand, within EX31_RS10730 at 62.660 kb on + strand, within EX31_RS10730 at 62.660 kb on + strand, within EX31_RS10730 at 62.661 kb on - strand, within EX31_RS10730 at 62.861 kb on - strand, within EX31_RS10730 at 62.861 kb on - strand, within EX31_RS10730 at 62.861 kb on - strand, within EX31_RS10730 at 62.861 kb on - strand, within EX31_RS10730 at 62.864 kb on + strand, within EX31_RS10730 at 62.920 kb on + strand, within EX31_RS10730 at 62.920 kb on + strand, within EX31_RS10730 at 62.921 kb on - strand, within EX31_RS10730 at 62.921 kb on - strand, within EX31_RS10730 at 62.921 kb on - strand, within EX31_RS10730 at 62.921 kb on - strand, within EX31_RS10730 at 62.921 kb on - strand, within EX31_RS10730 at 62.921 kb on - strand, within EX31_RS10730 at 62.921 kb on - strand, within EX31_RS10730 at 63.002 kb on + strand, within EX31_RS10730 at 63.002 kb on + strand, within EX31_RS10730 at 63.002 kb on + strand, within EX31_RS10730 at 63.003 kb on - strand, within EX31_RS10730 at 63.003 kb on - strand, within EX31_RS10730 at 63.003 kb on - strand, within EX31_RS10730 at 63.006 kb on - strand, within EX31_RS10730 at 63.006 kb on - strand, within EX31_RS10730 at 63.069 kb on - strand at 63.069 kb on - strand at 63.069 kb on - strand at 63.069 kb on - strand at 63.143 kb on + strand at 63.143 kb on + strand at 63.161 kb on - strand at 63.161 kb on - strand at 63.170 kb on + strand at 63.170 kb on + strand at 63.171 kb on - strand at 63.171 kb on - strand at 63.191 kb on + strand at 63.216 kb on - strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.259 kb on + strand at 63.259 kb on + strand at 63.259 kb on + strand at 63.259 kb on + strand at 63.259 kb on + strand at 63.259 kb on + strand at 63.259 kb on + strand at 63.260 kb on - strand at 63.269 kb on - strand at 63.282 kb on + strand at 63.321 kb on + strand at 63.321 kb on + strand at 63.322 kb on - strand at 63.322 kb on - strand at 63.322 kb on - strand at 63.322 kb on - strand at 63.322 kb on - strand at 63.322 kb on - strand at 63.322 kb on - strand at 63.322 kb on - strand at 63.329 kb on - strand at 63.332 kb on - strand at 63.354 kb on + strand at 63.354 kb on + strand at 63.358 kb on - strand at 63.374 kb on - strand at 63.396 kb on - strand at 63.428 kb on + strand at 63.428 kb on + strand at 63.449 kb on + strand at 63.449 kb on + strand at 63.449 kb on + strand at 63.449 kb on + strand at 63.449 kb on + strand at 63.449 kb on + strand at 63.450 kb on - strand at 63.450 kb on - strand at 63.450 kb on - strand at 63.450 kb on - strand at 63.451 kb on + strand at 63.483 kb on + strand at 63.483 kb on + strand at 63.494 kb on + strand at 63.494 kb on + strand at 63.494 kb on + strand at 63.494 kb on + strand at 63.494 kb on + strand at 63.495 kb on - strand at 63.558 kb on - strand, within EX31_RS10735 at 63.584 kb on + strand, within EX31_RS10735 at 63.622 kb on + strand, within EX31_RS10735 at 63.622 kb on + strand, within EX31_RS10735 at 63.625 kb on + strand, within EX31_RS10735 at 63.625 kb on + strand, within EX31_RS10735 at 63.667 kb on + strand, within EX31_RS10735 at 63.667 kb on + strand, within EX31_RS10735 at 63.803 kb on + strand, within EX31_RS10735 at 63.804 kb on - strand, within EX31_RS10735 at 63.804 kb on - strand, within EX31_RS10735 at 63.804 kb on - strand, within EX31_RS10735 at 63.893 kb on + strand at 63.894 kb on - strand at 63.931 kb on - strand at 63.931 kb on - strand at 63.933 kb on - strand at 63.933 kb on - strand at 63.974 kb on + strand, within EX31_RS10740 at 64.019 kb on - strand, within EX31_RS10740 at 64.019 kb on - strand, within EX31_RS10740 at 64.062 kb on - strand, within EX31_RS10740 at 64.085 kb on - strand, within EX31_RS10740 at 64.110 kb on + strand, within EX31_RS10740 at 64.110 kb on + strand, within EX31_RS10740 at 64.110 kb on + strand, within EX31_RS10740 at 64.111 kb on - strand, within EX31_RS10740 at 64.111 kb on - strand, within EX31_RS10740 at 64.111 kb on - strand, within EX31_RS10740 at 64.131 kb on + strand, within EX31_RS10740 at 64.132 kb on - strand, within EX31_RS10740 at 64.132 kb on - strand, within EX31_RS10740 at 64.158 kb on + strand, within EX31_RS10740 at 64.158 kb on + strand, within EX31_RS10740 at 64.158 kb on + strand, within EX31_RS10740 at 64.159 kb on - strand, within EX31_RS10740 at 64.160 kb on + strand, within EX31_RS10740 at 64.160 kb on + strand, within EX31_RS10740 at 64.161 kb on - strand, within EX31_RS10740 at 64.163 kb on + strand, within EX31_RS10740 at 64.164 kb on - strand, within EX31_RS10740 at 64.164 kb on - strand, within EX31_RS10740 at 64.164 kb on - strand, within EX31_RS10740 at 64.164 kb on - strand, within EX31_RS10740 at 64.292 kb on - strand, within EX31_RS10740 at 64.302 kb on + strand, within EX31_RS10740 at 64.303 kb on - strand, within EX31_RS10740 at 64.303 kb on - strand, within EX31_RS10740 at 64.449 kb on + strand, within EX31_RS10740 at 64.450 kb on - strand, within EX31_RS10740 at 64.450 kb on - strand, within EX31_RS10740 at 64.618 kb on + strand, within EX31_RS10740 at 64.619 kb on - strand, within EX31_RS10740 at 64.655 kb on - strand, within EX31_RS10740 at 64.655 kb on - strand, within EX31_RS10740 at 64.655 kb on - strand, within EX31_RS10740 at 64.708 kb on - strand at 64.732 kb on - strand at 64.764 kb on + strand at 64.764 kb on + strand at 64.765 kb on - strand at 64.765 kb on - strand at 64.770 kb on + strand at 64.771 kb on - strand at 64.771 kb on - strand at 64.771 kb on - strand at 64.771 kb on - strand at 64.797 kb on + strand at 64.806 kb on + strand at 64.806 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 62,548 + EX31_RS10730 0.66 -0.1 62,549 - EX31_RS10730 0.66 -1.1 62,549 - EX31_RS10730 0.66 +0.4 62,570 + EX31_RS10730 0.67 -0.9 62,647 + EX31_RS10730 0.71 -0.2 62,648 - EX31_RS10730 0.71 +0.7 62,648 - EX31_RS10730 0.71 -1.8 62,652 - EX31_RS10730 0.71 +0.1 62,660 + EX31_RS10730 0.72 +0.5 62,660 + EX31_RS10730 0.72 +1.4 62,661 - EX31_RS10730 0.72 -1.0 62,861 - EX31_RS10730 0.81 -0.3 62,861 - EX31_RS10730 0.81 +0.2 62,861 - EX31_RS10730 0.81 +0.8 62,861 - EX31_RS10730 0.81 -0.5 62,864 + EX31_RS10730 0.81 +0.3 62,920 + EX31_RS10730 0.84 -1.4 62,920 + EX31_RS10730 0.84 -0.9 62,921 - EX31_RS10730 0.84 -0.3 62,921 - EX31_RS10730 0.84 +0.7 62,921 - EX31_RS10730 0.84 +0.6 62,921 - EX31_RS10730 0.84 +0.9 62,921 - EX31_RS10730 0.84 +0.1 62,921 - EX31_RS10730 0.84 -0.3 62,921 - EX31_RS10730 0.84 +0.2 63,002 + EX31_RS10730 0.88 +0.4 63,002 + EX31_RS10730 0.88 -0.7 63,002 + EX31_RS10730 0.88 +0.3 63,003 - EX31_RS10730 0.88 -1.8 63,003 - EX31_RS10730 0.88 +0.4 63,003 - EX31_RS10730 0.88 +0.8 63,006 - EX31_RS10730 0.88 +0.0 63,006 - EX31_RS10730 0.88 -0.1 63,069 - -0.4 63,069 - +1.3 63,069 - +0.5 63,069 - +0.2 63,143 + +0.1 63,143 + +0.6 63,161 - +0.5 63,161 - +0.8 63,170 + +0.3 63,170 + +0.5 63,171 - +0.3 63,171 - -1.1 63,191 + -0.1 63,216 - +0.2 63,257 + -0.1 63,257 + -1.4 63,257 + -1.6 63,257 + +0.3 63,257 + +0.7 63,257 + -1.0 63,257 + -0.4 63,257 + +1.1 63,258 - +0.4 63,258 - +0.5 63,258 - +1.1 63,258 - -0.2 63,258 - -0.1 63,258 - -0.5 63,258 - +0.2 63,258 - +0.5 63,258 - -0.6 63,259 + -1.5 63,259 + -0.6 63,259 + -1.8 63,259 + -0.9 63,259 + -0.3 63,259 + -0.5 63,259 + +0.8 63,260 - +1.1 63,269 - -0.5 63,282 + +1.0 63,321 + +0.2 63,321 + +1.4 63,322 - -0.7 63,322 - +1.4 63,322 - +0.1 63,322 - +1.0 63,322 - +0.1 63,322 - -0.1 63,322 - +0.4 63,322 - +0.7 63,329 - +0.1 63,332 - +0.3 63,354 + -2.9 63,354 + +1.6 63,358 - +0.6 63,374 - +0.4 63,396 - +0.3 63,428 + -0.4 63,428 + +1.1 63,449 + +1.1 63,449 + -0.8 63,449 + +0.1 63,449 + -0.0 63,449 + -1.1 63,449 + +0.4 63,450 - -0.0 63,450 - -1.6 63,450 - -0.4 63,450 - +1.3 63,451 + -0.6 63,483 + +0.1 63,483 + -0.0 63,494 + -0.6 63,494 + -0.5 63,494 + +1.1 63,494 + +0.2 63,494 + -1.0 63,495 - -0.8 63,558 - EX31_RS10735 0.18 -0.4 63,584 + EX31_RS10735 0.25 -0.3 63,622 + EX31_RS10735 0.36 -0.9 63,622 + EX31_RS10735 0.36 -0.7 63,625 + EX31_RS10735 0.37 +1.2 63,625 + EX31_RS10735 0.37 -0.1 63,667 + EX31_RS10735 0.49 -0.5 63,667 + EX31_RS10735 0.49 -1.3 63,803 + EX31_RS10735 0.87 -0.1 63,804 - EX31_RS10735 0.87 +0.7 63,804 - EX31_RS10735 0.87 -2.0 63,804 - EX31_RS10735 0.87 -1.4 63,893 + +0.2 63,894 - +0.2 63,931 - -0.1 63,931 - -0.8 63,933 - -1.3 63,933 - -2.2 63,974 + EX31_RS10740 0.14 +1.1 64,019 - EX31_RS10740 0.19 +0.3 64,019 - EX31_RS10740 0.19 +0.1 64,062 - EX31_RS10740 0.24 -1.7 64,085 - EX31_RS10740 0.26 -1.2 64,110 + EX31_RS10740 0.29 -2.2 64,110 + EX31_RS10740 0.29 -1.0 64,110 + EX31_RS10740 0.29 -0.4 64,111 - EX31_RS10740 0.29 +0.5 64,111 - EX31_RS10740 0.29 -0.7 64,111 - EX31_RS10740 0.29 -1.1 64,131 + EX31_RS10740 0.31 +0.3 64,132 - EX31_RS10740 0.31 +0.6 64,132 - EX31_RS10740 0.31 -1.7 64,158 + EX31_RS10740 0.34 -0.8 64,158 + EX31_RS10740 0.34 -0.5 64,158 + EX31_RS10740 0.34 -0.5 64,159 - EX31_RS10740 0.34 -0.0 64,160 + EX31_RS10740 0.34 -1.2 64,160 + EX31_RS10740 0.34 +0.7 64,161 - EX31_RS10740 0.34 +0.5 64,163 + EX31_RS10740 0.35 -0.6 64,164 - EX31_RS10740 0.35 -0.2 64,164 - EX31_RS10740 0.35 -2.1 64,164 - EX31_RS10740 0.35 -0.5 64,164 - EX31_RS10740 0.35 -0.4 64,292 - EX31_RS10740 0.49 -0.4 64,302 + EX31_RS10740 0.50 -0.0 64,303 - EX31_RS10740 0.50 -1.5 64,303 - EX31_RS10740 0.50 -1.3 64,449 + EX31_RS10740 0.66 +1.4 64,450 - EX31_RS10740 0.66 -0.1 64,450 - EX31_RS10740 0.66 +0.5 64,618 + EX31_RS10740 0.84 -0.7 64,619 - EX31_RS10740 0.84 +0.8 64,655 - EX31_RS10740 0.88 +0.0 64,655 - EX31_RS10740 0.88 -0.6 64,655 - EX31_RS10740 0.88 -0.1 64,708 - -1.8 64,732 - -0.7 64,764 + -0.4 64,764 + -0.5 64,765 - -0.1 64,765 - -0.5 64,770 + -0.9 64,771 - -1.3 64,771 - -0.6 64,771 - -0.2 64,771 - +0.4 64,797 + -0.4 64,806 + +0.1 64,806 + +0.3
Or see this region's nucleotide sequence