Strain Fitness in Rahnella sp. WP5 around EX31_RS10430

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10425 and EX31_RS10430 are separated by 3 nucleotidesEX31_RS10430 and EX31_RS10435 overlap by 4 nucleotides EX31_RS10425: EX31_RS10425 - transporter substrate-binding domain-containing protein, at 296,134 to 296,973 _RS10425 EX31_RS10430: EX31_RS10430 - 5-oxoprolinase subunit PxpB, at 296,977 to 297,687 _RS10430 EX31_RS10435: EX31_RS10435 - biotin-dependent carboxyltransferase family protein, at 297,684 to 298,685 _RS10435 Position (kb) 296 297 298Strain fitness (log2 ratio) -2 -1 0 1 2at 295.989 kb on + strandat 295.998 kb on + strandat 295.999 kb on - strandat 295.999 kb on - strandat 296.005 kb on + strandat 296.007 kb on + strandat 296.008 kb on - strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.026 kb on + strandat 296.027 kb on - strandat 296.027 kb on - strandat 296.027 kb on - strandat 296.027 kb on - strandat 296.027 kb on - strandat 296.027 kb on - strandat 296.027 kb on - strandat 296.028 kb on + strandat 296.028 kb on + strandat 296.028 kb on + strandat 296.028 kb on + strandat 296.028 kb on + strandat 296.028 kb on + strandat 296.029 kb on - strandat 296.029 kb on - strandat 296.029 kb on - strandat 296.029 kb on - strandat 296.029 kb on - strandat 296.030 kb on + strandat 296.030 kb on + strandat 296.030 kb on + strandat 296.031 kb on - strandat 296.031 kb on - strandat 296.046 kb on + strandat 296.107 kb on + strandat 296.108 kb on - strandat 296.147 kb on + strandat 296.148 kb on - strandat 296.324 kb on + strand, within EX31_RS10425at 296.379 kb on + strand, within EX31_RS10425at 296.391 kb on + strand, within EX31_RS10425at 296.443 kb on + strand, within EX31_RS10425at 296.443 kb on + strand, within EX31_RS10425at 296.485 kb on + strand, within EX31_RS10425at 296.488 kb on + strand, within EX31_RS10425at 296.488 kb on + strand, within EX31_RS10425at 296.489 kb on - strand, within EX31_RS10425at 296.489 kb on - strand, within EX31_RS10425at 296.489 kb on - strand, within EX31_RS10425at 296.504 kb on + strand, within EX31_RS10425at 296.551 kb on - strand, within EX31_RS10425at 296.603 kb on - strand, within EX31_RS10425at 296.603 kb on - strand, within EX31_RS10425at 296.872 kb on - strand, within EX31_RS10425at 296.933 kb on + strandat 296.933 kb on + strandat 296.934 kb on - strandat 296.934 kb on - strandat 296.934 kb on - strandat 296.934 kb on - strandat 296.934 kb on - strandat 297.018 kb on + strandat 297.406 kb on + strand, within EX31_RS10430at 297.406 kb on + strand, within EX31_RS10430at 297.406 kb on + strand, within EX31_RS10430at 297.446 kb on - strand, within EX31_RS10430at 297.446 kb on - strand, within EX31_RS10430at 297.504 kb on + strand, within EX31_RS10430at 297.504 kb on + strand, within EX31_RS10430at 297.505 kb on - strand, within EX31_RS10430at 297.505 kb on - strand, within EX31_RS10430at 297.505 kb on - strand, within EX31_RS10430at 297.731 kb on + strandat 298.017 kb on + strand, within EX31_RS10435at 298.033 kb on - strand, within EX31_RS10435at 298.114 kb on + strand, within EX31_RS10435at 298.228 kb on + strand, within EX31_RS10435at 298.268 kb on + strand, within EX31_RS10435at 298.534 kb on + strand, within EX31_RS10435at 298.535 kb on - strand, within EX31_RS10435at 298.655 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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295,989 + +1.4
295,998 + -0.9
295,999 - +1.0
295,999 - +2.2
296,005 + -0.3
296,007 + +0.9
296,008 - -0.4
296,026 + +0.9
296,026 + +0.6
296,026 + +1.1
296,026 + -0.1
296,026 + -0.9
296,026 + +0.1
296,026 + +0.1
296,026 + +0.3
296,026 + +0.1
296,026 + -0.1
296,026 + -0.9
296,026 + -0.7
296,026 + +1.1
296,026 + +0.6
296,026 + +1.2
296,027 - +0.2
296,027 - +0.2
296,027 - +0.2
296,027 - +0.1
296,027 - +0.3
296,027 - -0.0
296,027 - +0.2
296,028 + -0.8
296,028 + +1.5
296,028 + -0.5
296,028 + -0.1
296,028 + +1.2
296,028 + +0.1
296,029 - +0.8
296,029 - +0.0
296,029 - -0.8
296,029 - +0.7
296,029 - +0.6
296,030 + -1.2
296,030 + +0.6
296,030 + +0.7
296,031 - -1.4
296,031 - -1.9
296,046 + -0.8
296,107 + -0.8
296,108 - -0.1
296,147 + -0.8
296,148 - +0.7
296,324 + EX31_RS10425 0.23 -1.2
296,379 + EX31_RS10425 0.29 -0.5
296,391 + EX31_RS10425 0.31 -0.3
296,443 + EX31_RS10425 0.37 +0.2
296,443 + EX31_RS10425 0.37 +0.3
296,485 + EX31_RS10425 0.42 +0.3
296,488 + EX31_RS10425 0.42 -0.3
296,488 + EX31_RS10425 0.42 -0.6
296,489 - EX31_RS10425 0.42 +1.9
296,489 - EX31_RS10425 0.42 -0.1
296,489 - EX31_RS10425 0.42 -0.2
296,504 + EX31_RS10425 0.44 -0.1
296,551 - EX31_RS10425 0.50 +0.1
296,603 - EX31_RS10425 0.56 +1.0
296,603 - EX31_RS10425 0.56 +0.0
296,872 - EX31_RS10425 0.88 +0.4
296,933 + -0.0
296,933 + +0.7
296,934 - -1.5
296,934 - -2.6
296,934 - -0.4
296,934 - +0.6
296,934 - +0.1
297,018 + +0.0
297,406 + EX31_RS10430 0.60 -1.0
297,406 + EX31_RS10430 0.60 +0.3
297,406 + EX31_RS10430 0.60 -0.7
297,446 - EX31_RS10430 0.66 +0.1
297,446 - EX31_RS10430 0.66 -0.9
297,504 + EX31_RS10430 0.74 +0.0
297,504 + EX31_RS10430 0.74 -0.4
297,505 - EX31_RS10430 0.74 -0.3
297,505 - EX31_RS10430 0.74 +0.6
297,505 - EX31_RS10430 0.74 -0.0
297,731 + +0.1
298,017 + EX31_RS10435 0.33 -0.8
298,033 - EX31_RS10435 0.35 -0.1
298,114 + EX31_RS10435 0.43 -0.0
298,228 + EX31_RS10435 0.54 -0.8
298,268 + EX31_RS10435 0.58 -0.7
298,534 + EX31_RS10435 0.85 -1.9
298,535 - EX31_RS10435 0.85 -0.8
298,655 + -1.2

Or see this region's nucleotide sequence