Strain Fitness in Rahnella sp. WP5 around EX31_RS09985

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09980 and EX31_RS09985 are separated by 215 nucleotidesEX31_RS09985 and EX31_RS09990 are separated by 71 nucleotidesEX31_RS09990 and EX31_RS09995 are separated by 291 nucleotides EX31_RS09980: EX31_RS09980 - tryptophan synthase subunit alpha, at 205,754 to 206,560 _RS09980 EX31_RS09985: EX31_RS09985 - BON domain-containing protein, at 206,776 to 207,090 _RS09985 EX31_RS09990: EX31_RS09990 - outer membrane protein OmpW, at 207,162 to 207,794 _RS09990 EX31_RS09995: EX31_RS09995 - YkgJ family cysteine cluster protein, at 208,086 to 208,463 _RS09995 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 206.057 kb on + strand, within EX31_RS09980at 206.057 kb on + strand, within EX31_RS09980at 206.057 kb on + strand, within EX31_RS09980at 206.057 kb on + strand, within EX31_RS09980at 206.058 kb on - strand, within EX31_RS09980at 206.058 kb on - strand, within EX31_RS09980at 206.096 kb on + strand, within EX31_RS09980at 206.096 kb on + strand, within EX31_RS09980at 206.097 kb on - strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.270 kb on + strand, within EX31_RS09980at 206.276 kb on + strand, within EX31_RS09980at 206.276 kb on + strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.347 kb on + strand, within EX31_RS09980at 206.353 kb on - strand, within EX31_RS09980at 206.360 kb on + strand, within EX31_RS09980at 206.361 kb on - strand, within EX31_RS09980at 206.446 kb on + strand, within EX31_RS09980at 206.446 kb on + strand, within EX31_RS09980at 206.470 kb on + strand, within EX31_RS09980at 206.470 kb on + strand, within EX31_RS09980at 206.558 kb on + strandat 206.647 kb on + strandat 206.648 kb on - strandat 206.650 kb on + strandat 206.662 kb on + strandat 206.696 kb on + strandat 206.696 kb on + strandat 206.696 kb on + strandat 206.697 kb on - strandat 206.697 kb on - strandat 206.728 kb on - strandat 206.878 kb on + strand, within EX31_RS09985at 206.879 kb on - strand, within EX31_RS09985at 206.909 kb on + strand, within EX31_RS09985at 206.931 kb on + strand, within EX31_RS09985at 206.931 kb on + strand, within EX31_RS09985at 206.931 kb on + strand, within EX31_RS09985at 206.932 kb on - strand, within EX31_RS09985at 206.932 kb on - strand, within EX31_RS09985at 206.932 kb on - strand, within EX31_RS09985at 206.940 kb on + strand, within EX31_RS09985at 206.940 kb on + strand, within EX31_RS09985at 206.941 kb on - strand, within EX31_RS09985at 206.941 kb on - strand, within EX31_RS09985at 206.970 kb on + strand, within EX31_RS09985at 207.075 kb on + strandat 207.100 kb on + strandat 207.101 kb on - strandat 207.101 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.314 kb on - strand, within EX31_RS09990at 207.314 kb on - strand, within EX31_RS09990at 207.409 kb on + strand, within EX31_RS09990at 207.410 kb on - strand, within EX31_RS09990at 207.421 kb on + strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.429 kb on - strand, within EX31_RS09990at 207.433 kb on - strand, within EX31_RS09990at 207.433 kb on - strand, within EX31_RS09990at 207.475 kb on + strand, within EX31_RS09990at 207.475 kb on + strand, within EX31_RS09990at 207.476 kb on - strand, within EX31_RS09990at 207.476 kb on - strand, within EX31_RS09990at 207.476 kb on - strand, within EX31_RS09990at 207.605 kb on - strand, within EX31_RS09990at 207.605 kb on - strand, within EX31_RS09990at 207.605 kb on - strand, within EX31_RS09990at 207.641 kb on + strand, within EX31_RS09990at 207.705 kb on + strand, within EX31_RS09990at 207.772 kb on - strandat 207.818 kb on - strandat 207.822 kb on - strandat 207.839 kb on + strandat 207.843 kb on + strandat 207.844 kb on - strandat 207.844 kb on - strandat 207.853 kb on + strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.925 kb on - strandat 208.007 kb on + strandat 208.041 kb on + strandat 208.041 kb on + strandat 208.042 kb on - strandat 208.042 kb on - strandat 208.042 kb on - strandat 208.045 kb on + strandat 208.045 kb on + strandat 208.046 kb on - strandat 208.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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206,057 + EX31_RS09980 0.38 +0.2
206,057 + EX31_RS09980 0.38 -0.6
206,057 + EX31_RS09980 0.38 -0.3
206,057 + EX31_RS09980 0.38 +0.3
206,058 - EX31_RS09980 0.38 -1.0
206,058 - EX31_RS09980 0.38 -1.1
206,096 + EX31_RS09980 0.42 +1.9
206,096 + EX31_RS09980 0.42 +0.4
206,097 - EX31_RS09980 0.43 +1.3
206,203 + EX31_RS09980 0.56 -0.1
206,203 + EX31_RS09980 0.56 +0.4
206,203 + EX31_RS09980 0.56 +0.2
206,270 + EX31_RS09980 0.64 +0.1
206,276 + EX31_RS09980 0.65 -1.0
206,276 + EX31_RS09980 0.65 -1.0
206,277 - EX31_RS09980 0.65 +0.1
206,277 - EX31_RS09980 0.65 -0.7
206,277 - EX31_RS09980 0.65 +0.0
206,277 - EX31_RS09980 0.65 +0.1
206,347 + EX31_RS09980 0.73 -0.2
206,353 - EX31_RS09980 0.74 +0.4
206,360 + EX31_RS09980 0.75 +0.1
206,361 - EX31_RS09980 0.75 -0.7
206,446 + EX31_RS09980 0.86 -0.5
206,446 + EX31_RS09980 0.86 -0.7
206,470 + EX31_RS09980 0.89 -1.8
206,470 + EX31_RS09980 0.89 -0.4
206,558 + -0.4
206,647 + +0.5
206,648 - -0.3
206,650 + -0.2
206,662 + -0.1
206,696 + +0.2
206,696 + +0.5
206,696 + -0.5
206,697 - -0.3
206,697 - +0.3
206,728 - -0.2
206,878 + EX31_RS09985 0.32 -0.8
206,879 - EX31_RS09985 0.33 +0.0
206,909 + EX31_RS09985 0.42 -1.6
206,931 + EX31_RS09985 0.49 +0.4
206,931 + EX31_RS09985 0.49 +0.0
206,931 + EX31_RS09985 0.49 +0.2
206,932 - EX31_RS09985 0.50 -0.6
206,932 - EX31_RS09985 0.50 -0.4
206,932 - EX31_RS09985 0.50 -1.6
206,940 + EX31_RS09985 0.52 -1.1
206,940 + EX31_RS09985 0.52 -0.2
206,941 - EX31_RS09985 0.52 -1.0
206,941 - EX31_RS09985 0.52 -0.1
206,970 + EX31_RS09985 0.62 +0.6
207,075 + +0.2
207,100 + +1.2
207,101 - -0.7
207,101 - +0.8
207,189 - -1.2
207,189 - -1.4
207,189 - +1.6
207,189 - -0.1
207,189 - -0.5
207,314 - EX31_RS09990 0.24 +0.9
207,314 - EX31_RS09990 0.24 +0.8
207,409 + EX31_RS09990 0.39 +0.1
207,410 - EX31_RS09990 0.39 +0.5
207,421 + EX31_RS09990 0.41 -0.3
207,422 - EX31_RS09990 0.41 -0.8
207,422 - EX31_RS09990 0.41 -0.2
207,422 - EX31_RS09990 0.41 -1.6
207,422 - EX31_RS09990 0.41 +1.0
207,429 - EX31_RS09990 0.42 +1.0
207,433 - EX31_RS09990 0.43 +0.4
207,433 - EX31_RS09990 0.43 +0.2
207,475 + EX31_RS09990 0.49 -1.0
207,475 + EX31_RS09990 0.49 -0.1
207,476 - EX31_RS09990 0.50 -0.6
207,476 - EX31_RS09990 0.50 +0.4
207,476 - EX31_RS09990 0.50 -0.5
207,605 - EX31_RS09990 0.70 +0.1
207,605 - EX31_RS09990 0.70 +0.5
207,605 - EX31_RS09990 0.70 +0.7
207,641 + EX31_RS09990 0.76 +0.7
207,705 + EX31_RS09990 0.86 +0.8
207,772 - +0.4
207,818 - -0.2
207,822 - +1.6
207,839 + -1.2
207,843 + +1.8
207,844 - -1.0
207,844 - +0.2
207,853 + +0.2
207,884 - +0.4
207,884 - -0.6
207,925 - -0.7
208,007 + +0.9
208,041 + -0.1
208,041 + -0.9
208,042 - -0.0
208,042 - +1.0
208,042 - -1.1
208,045 + +1.0
208,045 + +0.2
208,046 - -0.3
208,046 - -0.4

Or see this region's nucleotide sequence