Strain Fitness in Rahnella sp. WP5 around EX31_RS09225

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09215 and EX31_RS09220 are separated by 2 nucleotidesEX31_RS09220 and EX31_RS09225 are separated by 64 nucleotidesEX31_RS09225 and EX31_RS09230 are separated by 586 nucleotides EX31_RS09215: EX31_RS09215 - MFS transporter, at 40,400 to 41,719 _RS09215 EX31_RS09220: EX31_RS09220 - MurR/RpiR family transcriptional regulator, at 41,722 to 42,576 _RS09220 EX31_RS09225: EX31_RS09225 - iron-containing alcohol dehydrogenase family protein, at 42,641 to 43,729 _RS09225 EX31_RS09230: EX31_RS09230 - LysR family transcriptional regulator, at 44,316 to 45,215 _RS09230 Position (kb) 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1at 41.701 kb on - strandat 41.717 kb on + strandat 42.135 kb on + strand, within EX31_RS09220at 42.139 kb on + strand, within EX31_RS09220at 42.604 kb on + strandat 42.605 kb on - strandat 42.605 kb on - strandat 42.605 kb on - strandat 42.605 kb on - strandat 42.606 kb on + strandat 42.607 kb on - strandat 42.607 kb on - strandat 42.607 kb on - strandat 42.607 kb on - strandat 42.676 kb on - strandat 42.697 kb on + strandat 42.697 kb on + strandat 42.818 kb on + strand, within EX31_RS09225at 42.819 kb on - strand, within EX31_RS09225at 42.819 kb on - strand, within EX31_RS09225at 43.412 kb on + strand, within EX31_RS09225at 43.412 kb on + strand, within EX31_RS09225at 43.413 kb on - strand, within EX31_RS09225at 43.413 kb on - strand, within EX31_RS09225at 43.447 kb on + strand, within EX31_RS09225at 43.664 kb on - strandat 43.667 kb on - strandat 43.727 kb on + strandat 43.867 kb on + strandat 44.182 kb on + strandat 44.183 kb on - strandat 44.183 kb on - strandat 44.183 kb on - strandat 44.183 kb on - strandat 44.183 kb on - strandat 44.183 kb on - strandat 44.480 kb on - strand, within EX31_RS09230at 44.551 kb on + strand, within EX31_RS09230at 44.723 kb on + strand, within EX31_RS09230

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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41,701 - -1.8
41,717 + -0.5
42,135 + EX31_RS09220 0.48 -0.2
42,139 + EX31_RS09220 0.49 +1.4
42,604 + +0.2
42,605 - +0.2
42,605 - -1.0
42,605 - -0.9
42,605 - -0.5
42,606 + +1.4
42,607 - -0.6
42,607 - +0.7
42,607 - -1.0
42,607 - -1.0
42,676 - -0.8
42,697 + -0.1
42,697 + +0.8
42,818 + EX31_RS09225 0.16 -1.6
42,819 - EX31_RS09225 0.16 -2.8
42,819 - EX31_RS09225 0.16 -0.6
43,412 + EX31_RS09225 0.71 -1.1
43,412 + EX31_RS09225 0.71 -0.2
43,413 - EX31_RS09225 0.71 -0.5
43,413 - EX31_RS09225 0.71 +0.6
43,447 + EX31_RS09225 0.74 +1.3
43,664 - +1.4
43,667 - -0.3
43,727 + -1.8
43,867 + +0.9
44,182 + -0.4
44,183 - -1.7
44,183 - -0.5
44,183 - +0.8
44,183 - +1.0
44,183 - +0.5
44,183 - +0.1
44,480 - EX31_RS09230 0.18 +0.6
44,551 + EX31_RS09230 0.26 -2.0
44,723 + EX31_RS09230 0.45 -0.9

Or see this region's nucleotide sequence