Strain Fitness in Rahnella sp. WP5 around EX31_RS07485

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07480 and EX31_RS25965 are separated by 39 nucleotidesEX31_RS25965 and EX31_RS07485 are separated by 359 nucleotidesEX31_RS07485 and EX31_RS07490 are separated by 65 nucleotidesEX31_RS07490 and EX31_RS07495 are separated by 187 nucleotides EX31_RS07480: EX31_RS07480 - flavocytochrome c, at 307,416 to 310,193 _RS07480 EX31_RS25965: EX31_RS25965 - hypothetical protein, at 310,233 to 310,412 _RS25965 EX31_RS07485: EX31_RS07485 - anion permease, at 310,772 to 312,283 _RS07485 EX31_RS07490: EX31_RS07490 - GntR family transcriptional regulator, at 312,349 to 313,014 _RS07490 EX31_RS07495: EX31_RS07495 - ABC transporter substrate-binding protein, at 313,202 to 314,695 _RS07495 Position (kb) 310 311 312 313Strain fitness (log2 ratio) -2 -1 0 1at 309.836 kb on + strand, within EX31_RS07480at 309.837 kb on - strand, within EX31_RS07480at 309.881 kb on - strand, within EX31_RS07480at 309.881 kb on - strand, within EX31_RS07480at 309.881 kb on - strand, within EX31_RS07480at 309.914 kb on + strand, within EX31_RS07480at 309.915 kb on - strand, within EX31_RS07480at 310.004 kb on + strandat 310.005 kb on - strandat 310.057 kb on + strandat 310.058 kb on - strandat 310.058 kb on - strandat 310.058 kb on - strandat 310.091 kb on - strandat 310.187 kb on + strandat 310.195 kb on - strandat 310.216 kb on - strandat 310.244 kb on - strandat 310.244 kb on - strandat 310.262 kb on - strand, within EX31_RS25965at 310.267 kb on + strand, within EX31_RS25965at 310.268 kb on - strand, within EX31_RS25965at 310.268 kb on - strand, within EX31_RS25965at 310.268 kb on - strand, within EX31_RS25965at 310.271 kb on + strand, within EX31_RS25965at 310.294 kb on - strand, within EX31_RS25965at 310.311 kb on - strand, within EX31_RS25965at 310.316 kb on - strand, within EX31_RS25965at 310.345 kb on + strand, within EX31_RS25965at 310.346 kb on - strand, within EX31_RS25965at 310.346 kb on - strand, within EX31_RS25965at 310.346 kb on - strand, within EX31_RS25965at 310.507 kb on + strandat 310.512 kb on + strandat 310.522 kb on + strandat 310.531 kb on + strandat 310.563 kb on - strandat 310.579 kb on + strandat 310.579 kb on + strandat 310.580 kb on - strandat 310.581 kb on + strandat 310.582 kb on - strandat 310.592 kb on - strandat 310.614 kb on + strandat 310.615 kb on - strandat 310.620 kb on + strandat 310.621 kb on - strandat 310.623 kb on + strandat 310.628 kb on + strandat 310.677 kb on + strandat 310.846 kb on + strandat 310.847 kb on - strandat 310.847 kb on - strandat 310.881 kb on + strandat 311.152 kb on + strand, within EX31_RS07485at 311.152 kb on + strand, within EX31_RS07485at 311.174 kb on - strand, within EX31_RS07485at 311.241 kb on + strand, within EX31_RS07485at 311.241 kb on + strand, within EX31_RS07485at 311.241 kb on + strand, within EX31_RS07485at 311.241 kb on + strand, within EX31_RS07485at 311.242 kb on - strand, within EX31_RS07485at 311.351 kb on + strand, within EX31_RS07485at 311.351 kb on + strand, within EX31_RS07485at 311.352 kb on - strand, within EX31_RS07485at 311.396 kb on + strand, within EX31_RS07485at 311.397 kb on - strand, within EX31_RS07485at 311.397 kb on - strand, within EX31_RS07485at 311.521 kb on + strand, within EX31_RS07485at 311.521 kb on + strand, within EX31_RS07485at 311.594 kb on + strand, within EX31_RS07485at 311.595 kb on - strand, within EX31_RS07485at 311.662 kb on + strand, within EX31_RS07485at 311.824 kb on + strand, within EX31_RS07485at 311.824 kb on + strand, within EX31_RS07485at 311.824 kb on + strand, within EX31_RS07485at 311.825 kb on - strand, within EX31_RS07485at 311.965 kb on + strand, within EX31_RS07485at 311.996 kb on + strand, within EX31_RS07485at 311.996 kb on + strand, within EX31_RS07485at 311.996 kb on + strand, within EX31_RS07485at 311.997 kb on - strand, within EX31_RS07485at 312.079 kb on + strand, within EX31_RS07485at 312.090 kb on - strand, within EX31_RS07485at 312.165 kb on - strandat 312.197 kb on + strandat 312.198 kb on - strandat 312.258 kb on - strandat 312.373 kb on - strandat 312.467 kb on + strand, within EX31_RS07490at 312.468 kb on - strand, within EX31_RS07490at 312.471 kb on + strand, within EX31_RS07490at 312.472 kb on - strand, within EX31_RS07490at 312.472 kb on - strand, within EX31_RS07490at 312.472 kb on - strand, within EX31_RS07490at 312.489 kb on + strand, within EX31_RS07490at 312.512 kb on + strand, within EX31_RS07490at 312.516 kb on + strand, within EX31_RS07490at 312.517 kb on - strand, within EX31_RS07490at 312.517 kb on - strand, within EX31_RS07490at 312.620 kb on - strand, within EX31_RS07490at 312.636 kb on + strand, within EX31_RS07490at 312.944 kb on - strand, within EX31_RS07490at 312.944 kb on - strand, within EX31_RS07490at 312.979 kb on - strandat 313.210 kb on - strandat 313.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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309,836 + EX31_RS07480 0.87 +1.4
309,837 - EX31_RS07480 0.87 +0.8
309,881 - EX31_RS07480 0.89 +0.1
309,881 - EX31_RS07480 0.89 -0.1
309,881 - EX31_RS07480 0.89 -0.7
309,914 + EX31_RS07480 0.90 +0.8
309,915 - EX31_RS07480 0.90 +0.8
310,004 + -0.5
310,005 - +0.3
310,057 + +0.1
310,058 - -1.1
310,058 - -0.7
310,058 - -0.7
310,091 - +0.3
310,187 + -0.4
310,195 - +0.5
310,216 - -0.8
310,244 - -1.0
310,244 - -1.5
310,262 - EX31_RS25965 0.16 -0.1
310,267 + EX31_RS25965 0.19 -1.9
310,268 - EX31_RS25965 0.19 -1.7
310,268 - EX31_RS25965 0.19 +0.0
310,268 - EX31_RS25965 0.19 -0.5
310,271 + EX31_RS25965 0.21 -0.1
310,294 - EX31_RS25965 0.34 -0.1
310,311 - EX31_RS25965 0.43 +0.7
310,316 - EX31_RS25965 0.46 -0.0
310,345 + EX31_RS25965 0.62 +0.0
310,346 - EX31_RS25965 0.63 -0.2
310,346 - EX31_RS25965 0.63 +1.1
310,346 - EX31_RS25965 0.63 -0.9
310,507 + -1.1
310,512 + +0.3
310,522 + +0.4
310,531 + +0.3
310,563 - -1.8
310,579 + -0.5
310,579 + +0.2
310,580 - +1.7
310,581 + +0.5
310,582 - -1.4
310,592 - +1.1
310,614 + -0.1
310,615 - -0.8
310,620 + +0.3
310,621 - -0.6
310,623 + +0.2
310,628 + -0.2
310,677 + +1.0
310,846 + +0.4
310,847 - -0.4
310,847 - -1.4
310,881 + -1.1
311,152 + EX31_RS07485 0.25 +1.3
311,152 + EX31_RS07485 0.25 -1.6
311,174 - EX31_RS07485 0.27 -1.9
311,241 + EX31_RS07485 0.31 +0.1
311,241 + EX31_RS07485 0.31 -0.8
311,241 + EX31_RS07485 0.31 -1.8
311,241 + EX31_RS07485 0.31 -1.4
311,242 - EX31_RS07485 0.31 -0.1
311,351 + EX31_RS07485 0.38 +1.2
311,351 + EX31_RS07485 0.38 +0.2
311,352 - EX31_RS07485 0.38 -2.7
311,396 + EX31_RS07485 0.41 -0.5
311,397 - EX31_RS07485 0.41 +0.2
311,397 - EX31_RS07485 0.41 -0.6
311,521 + EX31_RS07485 0.50 -1.6
311,521 + EX31_RS07485 0.50 -1.0
311,594 + EX31_RS07485 0.54 +0.6
311,595 - EX31_RS07485 0.54 -1.0
311,662 + EX31_RS07485 0.59 -0.1
311,824 + EX31_RS07485 0.70 +0.8
311,824 + EX31_RS07485 0.70 -1.0
311,824 + EX31_RS07485 0.70 -1.9
311,825 - EX31_RS07485 0.70 -2.1
311,965 + EX31_RS07485 0.79 -0.3
311,996 + EX31_RS07485 0.81 +0.9
311,996 + EX31_RS07485 0.81 -0.9
311,996 + EX31_RS07485 0.81 -0.3
311,997 - EX31_RS07485 0.81 -0.2
312,079 + EX31_RS07485 0.86 -0.9
312,090 - EX31_RS07485 0.87 +1.2
312,165 - +0.7
312,197 + +1.1
312,198 - +0.2
312,258 - -0.3
312,373 - +0.6
312,467 + EX31_RS07490 0.18 -1.5
312,468 - EX31_RS07490 0.18 +0.5
312,471 + EX31_RS07490 0.18 -0.1
312,472 - EX31_RS07490 0.18 +1.1
312,472 - EX31_RS07490 0.18 -0.7
312,472 - EX31_RS07490 0.18 -0.2
312,489 + EX31_RS07490 0.21 +1.2
312,512 + EX31_RS07490 0.24 +0.4
312,516 + EX31_RS07490 0.25 +0.1
312,517 - EX31_RS07490 0.25 +1.4
312,517 - EX31_RS07490 0.25 -0.9
312,620 - EX31_RS07490 0.41 +1.1
312,636 + EX31_RS07490 0.43 +1.7
312,944 - EX31_RS07490 0.89 -0.5
312,944 - EX31_RS07490 0.89 +0.1
312,979 - -0.4
313,210 - -1.7
313,244 - +0.4

Or see this region's nucleotide sequence