Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07480 and EX31_RS25965 are separated by 39 nucleotides EX31_RS25965 and EX31_RS07485 are separated by 359 nucleotides EX31_RS07485 and EX31_RS07490 are separated by 65 nucleotides EX31_RS07490 and EX31_RS07495 are separated by 187 nucleotides
EX31_RS07480: EX31_RS07480 - flavocytochrome c, at 307,416 to 310,193
_RS07480
EX31_RS25965: EX31_RS25965 - hypothetical protein, at 310,233 to 310,412
_RS25965
EX31_RS07485: EX31_RS07485 - anion permease, at 310,772 to 312,283
_RS07485
EX31_RS07490: EX31_RS07490 - GntR family transcriptional regulator, at 312,349 to 313,014
_RS07490
EX31_RS07495: EX31_RS07495 - ABC transporter substrate-binding protein, at 313,202 to 314,695
_RS07495
Position (kb)
310
311
312
313 Strain fitness (log2 ratio)
-2
-1
0
1 at 309.836 kb on + strand, within EX31_RS07480 at 309.837 kb on - strand, within EX31_RS07480 at 309.881 kb on - strand, within EX31_RS07480 at 309.881 kb on - strand, within EX31_RS07480 at 309.881 kb on - strand, within EX31_RS07480 at 309.914 kb on + strand, within EX31_RS07480 at 309.915 kb on - strand, within EX31_RS07480 at 310.004 kb on + strand at 310.005 kb on - strand at 310.057 kb on + strand at 310.058 kb on - strand at 310.058 kb on - strand at 310.058 kb on - strand at 310.091 kb on - strand at 310.187 kb on + strand at 310.195 kb on - strand at 310.216 kb on - strand at 310.244 kb on - strand at 310.244 kb on - strand at 310.262 kb on - strand, within EX31_RS25965 at 310.267 kb on + strand, within EX31_RS25965 at 310.268 kb on - strand, within EX31_RS25965 at 310.268 kb on - strand, within EX31_RS25965 at 310.268 kb on - strand, within EX31_RS25965 at 310.271 kb on + strand, within EX31_RS25965 at 310.294 kb on - strand, within EX31_RS25965 at 310.311 kb on - strand, within EX31_RS25965 at 310.316 kb on - strand, within EX31_RS25965 at 310.345 kb on + strand, within EX31_RS25965 at 310.346 kb on - strand, within EX31_RS25965 at 310.346 kb on - strand, within EX31_RS25965 at 310.346 kb on - strand, within EX31_RS25965 at 310.507 kb on + strand at 310.512 kb on + strand at 310.522 kb on + strand at 310.531 kb on + strand at 310.563 kb on - strand at 310.579 kb on + strand at 310.579 kb on + strand at 310.580 kb on - strand at 310.581 kb on + strand at 310.582 kb on - strand at 310.592 kb on - strand at 310.614 kb on + strand at 310.615 kb on - strand at 310.620 kb on + strand at 310.621 kb on - strand at 310.623 kb on + strand at 310.628 kb on + strand at 310.677 kb on + strand at 310.846 kb on + strand at 310.847 kb on - strand at 310.847 kb on - strand at 310.881 kb on + strand at 311.152 kb on + strand, within EX31_RS07485 at 311.152 kb on + strand, within EX31_RS07485 at 311.174 kb on - strand, within EX31_RS07485 at 311.241 kb on + strand, within EX31_RS07485 at 311.241 kb on + strand, within EX31_RS07485 at 311.241 kb on + strand, within EX31_RS07485 at 311.241 kb on + strand, within EX31_RS07485 at 311.242 kb on - strand, within EX31_RS07485 at 311.351 kb on + strand, within EX31_RS07485 at 311.351 kb on + strand, within EX31_RS07485 at 311.352 kb on - strand, within EX31_RS07485 at 311.396 kb on + strand, within EX31_RS07485 at 311.397 kb on - strand, within EX31_RS07485 at 311.397 kb on - strand, within EX31_RS07485 at 311.521 kb on + strand, within EX31_RS07485 at 311.521 kb on + strand, within EX31_RS07485 at 311.594 kb on + strand, within EX31_RS07485 at 311.595 kb on - strand, within EX31_RS07485 at 311.662 kb on + strand, within EX31_RS07485 at 311.824 kb on + strand, within EX31_RS07485 at 311.824 kb on + strand, within EX31_RS07485 at 311.824 kb on + strand, within EX31_RS07485 at 311.825 kb on - strand, within EX31_RS07485 at 311.965 kb on + strand, within EX31_RS07485 at 311.996 kb on + strand, within EX31_RS07485 at 311.996 kb on + strand, within EX31_RS07485 at 311.996 kb on + strand, within EX31_RS07485 at 311.997 kb on - strand, within EX31_RS07485 at 312.079 kb on + strand, within EX31_RS07485 at 312.090 kb on - strand, within EX31_RS07485 at 312.165 kb on - strand at 312.197 kb on + strand at 312.198 kb on - strand at 312.258 kb on - strand at 312.373 kb on - strand at 312.467 kb on + strand, within EX31_RS07490 at 312.468 kb on - strand, within EX31_RS07490 at 312.471 kb on + strand, within EX31_RS07490 at 312.472 kb on - strand, within EX31_RS07490 at 312.472 kb on - strand, within EX31_RS07490 at 312.472 kb on - strand, within EX31_RS07490 at 312.489 kb on + strand, within EX31_RS07490 at 312.512 kb on + strand, within EX31_RS07490 at 312.516 kb on + strand, within EX31_RS07490 at 312.517 kb on - strand, within EX31_RS07490 at 312.517 kb on - strand, within EX31_RS07490 at 312.620 kb on - strand, within EX31_RS07490 at 312.636 kb on + strand, within EX31_RS07490 at 312.944 kb on - strand, within EX31_RS07490 at 312.944 kb on - strand, within EX31_RS07490 at 312.979 kb on - strand at 313.210 kb on - strand at 313.244 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 309,836 + EX31_RS07480 0.87 +1.4 309,837 - EX31_RS07480 0.87 +0.8 309,881 - EX31_RS07480 0.89 +0.1 309,881 - EX31_RS07480 0.89 -0.1 309,881 - EX31_RS07480 0.89 -0.7 309,914 + EX31_RS07480 0.90 +0.8 309,915 - EX31_RS07480 0.90 +0.8 310,004 + -0.5 310,005 - +0.3 310,057 + +0.1 310,058 - -1.1 310,058 - -0.7 310,058 - -0.7 310,091 - +0.3 310,187 + -0.4 310,195 - +0.5 310,216 - -0.8 310,244 - -1.0 310,244 - -1.5 310,262 - EX31_RS25965 0.16 -0.1 310,267 + EX31_RS25965 0.19 -1.9 310,268 - EX31_RS25965 0.19 -1.7 310,268 - EX31_RS25965 0.19 +0.0 310,268 - EX31_RS25965 0.19 -0.5 310,271 + EX31_RS25965 0.21 -0.1 310,294 - EX31_RS25965 0.34 -0.1 310,311 - EX31_RS25965 0.43 +0.7 310,316 - EX31_RS25965 0.46 -0.0 310,345 + EX31_RS25965 0.62 +0.0 310,346 - EX31_RS25965 0.63 -0.2 310,346 - EX31_RS25965 0.63 +1.1 310,346 - EX31_RS25965 0.63 -0.9 310,507 + -1.1 310,512 + +0.3 310,522 + +0.4 310,531 + +0.3 310,563 - -1.8 310,579 + -0.5 310,579 + +0.2 310,580 - +1.7 310,581 + +0.5 310,582 - -1.4 310,592 - +1.1 310,614 + -0.1 310,615 - -0.8 310,620 + +0.3 310,621 - -0.6 310,623 + +0.2 310,628 + -0.2 310,677 + +1.0 310,846 + +0.4 310,847 - -0.4 310,847 - -1.4 310,881 + -1.1 311,152 + EX31_RS07485 0.25 +1.3 311,152 + EX31_RS07485 0.25 -1.6 311,174 - EX31_RS07485 0.27 -1.9 311,241 + EX31_RS07485 0.31 +0.1 311,241 + EX31_RS07485 0.31 -0.8 311,241 + EX31_RS07485 0.31 -1.8 311,241 + EX31_RS07485 0.31 -1.4 311,242 - EX31_RS07485 0.31 -0.1 311,351 + EX31_RS07485 0.38 +1.2 311,351 + EX31_RS07485 0.38 +0.2 311,352 - EX31_RS07485 0.38 -2.7 311,396 + EX31_RS07485 0.41 -0.5 311,397 - EX31_RS07485 0.41 +0.2 311,397 - EX31_RS07485 0.41 -0.6 311,521 + EX31_RS07485 0.50 -1.6 311,521 + EX31_RS07485 0.50 -1.0 311,594 + EX31_RS07485 0.54 +0.6 311,595 - EX31_RS07485 0.54 -1.0 311,662 + EX31_RS07485 0.59 -0.1 311,824 + EX31_RS07485 0.70 +0.8 311,824 + EX31_RS07485 0.70 -1.0 311,824 + EX31_RS07485 0.70 -1.9 311,825 - EX31_RS07485 0.70 -2.1 311,965 + EX31_RS07485 0.79 -0.3 311,996 + EX31_RS07485 0.81 +0.9 311,996 + EX31_RS07485 0.81 -0.9 311,996 + EX31_RS07485 0.81 -0.3 311,997 - EX31_RS07485 0.81 -0.2 312,079 + EX31_RS07485 0.86 -0.9 312,090 - EX31_RS07485 0.87 +1.2 312,165 - +0.7 312,197 + +1.1 312,198 - +0.2 312,258 - -0.3 312,373 - +0.6 312,467 + EX31_RS07490 0.18 -1.5 312,468 - EX31_RS07490 0.18 +0.5 312,471 + EX31_RS07490 0.18 -0.1 312,472 - EX31_RS07490 0.18 +1.1 312,472 - EX31_RS07490 0.18 -0.7 312,472 - EX31_RS07490 0.18 -0.2 312,489 + EX31_RS07490 0.21 +1.2 312,512 + EX31_RS07490 0.24 +0.4 312,516 + EX31_RS07490 0.25 +0.1 312,517 - EX31_RS07490 0.25 +1.4 312,517 - EX31_RS07490 0.25 -0.9 312,620 - EX31_RS07490 0.41 +1.1 312,636 + EX31_RS07490 0.43 +1.7 312,944 - EX31_RS07490 0.89 -0.5 312,944 - EX31_RS07490 0.89 +0.1 312,979 - -0.4 313,210 - -1.7 313,244 - +0.4
Or see this region's nucleotide sequence