Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07455 and EX31_RS07460 are separated by 132 nucleotides EX31_RS07460 and EX31_RS07465 are separated by 105 nucleotides EX31_RS07465 and EX31_RS07470 are separated by 25 nucleotides EX31_RS07470 and EX31_RS07475 are separated by 334 nucleotides
EX31_RS07455: EX31_RS07455 - urea carboxylase-associated family protein, at 303,351 to 304,028
_RS07455
EX31_RS07460: EX31_RS07460 - NAD(P)-binding domain-containing protein, at 304,161 to 304,805
_RS07460
EX31_RS07465: EX31_RS07465 - LysR family transcriptional regulator, at 304,911 to 305,798
_RS07465
EX31_RS07470: EX31_RS07470 - hypothetical protein, at 305,824 to 306,240
_RS07470
EX31_RS07475: EX31_RS07475 - hypothetical protein, at 306,575 to 307,147
_RS07475
Position (kb) 304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 304.113 kb on - strand at 304.237 kb on + strand, within EX31_RS07460 at 304.238 kb on - strand, within EX31_RS07460 at 304.238 kb on - strand, within EX31_RS07460 at 304.315 kb on + strand, within EX31_RS07460 at 304.316 kb on - strand, within EX31_RS07460 at 304.540 kb on + strand, within EX31_RS07460 at 304.812 kb on + strand at 304.813 kb on - strand at 304.885 kb on - strand at 305.103 kb on + strand, within EX31_RS07465 at 305.103 kb on + strand, within EX31_RS07465 at 305.103 kb on + strand, within EX31_RS07465 at 305.104 kb on - strand, within EX31_RS07465 at 305.104 kb on - strand, within EX31_RS07465 at 305.104 kb on - strand, within EX31_RS07465 at 305.132 kb on - strand, within EX31_RS07465 at 305.132 kb on - strand, within EX31_RS07465 at 305.250 kb on + strand, within EX31_RS07465 at 305.251 kb on - strand, within EX31_RS07465 at 305.684 kb on - strand, within EX31_RS07465 at 305.686 kb on + strand, within EX31_RS07465 at 305.720 kb on + strand at 305.845 kb on - strand at 305.904 kb on + strand, within EX31_RS07470 at 306.042 kb on - strand, within EX31_RS07470 at 306.170 kb on - strand, within EX31_RS07470 at 306.242 kb on + strand at 306.655 kb on + strand, within EX31_RS07475 at 306.655 kb on + strand, within EX31_RS07475
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 304,113 - +1.1 304,237 + EX31_RS07460 0.12 +1.2 304,238 - EX31_RS07460 0.12 -1.0 304,238 - EX31_RS07460 0.12 -0.2 304,315 + EX31_RS07460 0.24 -0.2 304,316 - EX31_RS07460 0.24 +0.8 304,540 + EX31_RS07460 0.59 -0.8 304,812 + -2.1 304,813 - -2.1 304,885 - +1.4 305,103 + EX31_RS07465 0.22 -1.6 305,103 + EX31_RS07465 0.22 -0.9 305,103 + EX31_RS07465 0.22 -1.5 305,104 - EX31_RS07465 0.22 -1.3 305,104 - EX31_RS07465 0.22 -0.8 305,104 - EX31_RS07465 0.22 -3.1 305,132 - EX31_RS07465 0.25 +0.0 305,132 - EX31_RS07465 0.25 -2.4 305,250 + EX31_RS07465 0.38 -0.0 305,251 - EX31_RS07465 0.38 +1.0 305,684 - EX31_RS07465 0.87 +0.2 305,686 + EX31_RS07465 0.87 +0.0 305,720 + -0.1 305,845 - +1.4 305,904 + EX31_RS07470 0.19 -0.2 306,042 - EX31_RS07470 0.52 +0.2 306,170 - EX31_RS07470 0.83 -0.5 306,242 + -2.6 306,655 + EX31_RS07475 0.14 +0.3 306,655 + EX31_RS07475 0.14 +0.9
Or see this region's nucleotide sequence