Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06895 and EX31_RS06900 are separated by 48 nucleotides EX31_RS06900 and EX31_RS06905 are separated by 187 nucleotides EX31_RS06905 and EX31_RS06910 are separated by 201 nucleotides
EX31_RS06895: EX31_RS06895 - HlyD family secretion protein, at 168,234 to 169,292
_RS06895
EX31_RS06900: EX31_RS06900 - MFS transporter, at 169,341 to 171,071
_RS06900
EX31_RS06905: EX31_RS06905 - MarR family transcriptional regulator, at 171,259 to 171,717
_RS06905
EX31_RS06910: EX31_RS06910 - VOC family protein, at 171,919 to 172,332
_RS06910
Position (kb) 169
170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 168.374 kb on + strand, within EX31_RS06895 at 168.449 kb on + strand, within EX31_RS06895 at 168.450 kb on - strand, within EX31_RS06895 at 168.592 kb on + strand, within EX31_RS06895 at 168.593 kb on - strand, within EX31_RS06895 at 168.653 kb on + strand, within EX31_RS06895 at 168.654 kb on - strand, within EX31_RS06895 at 168.702 kb on + strand, within EX31_RS06895 at 169.026 kb on + strand, within EX31_RS06895 at 169.026 kb on + strand, within EX31_RS06895 at 169.026 kb on + strand, within EX31_RS06895 at 169.026 kb on + strand, within EX31_RS06895 at 169.040 kb on - strand, within EX31_RS06895 at 169.118 kb on - strand, within EX31_RS06895 at 169.118 kb on - strand, within EX31_RS06895 at 169.118 kb on - strand, within EX31_RS06895 at 169.162 kb on + strand, within EX31_RS06895 at 169.216 kb on + strand at 169.217 kb on - strand at 169.262 kb on + strand at 169.263 kb on - strand at 169.434 kb on - strand at 169.460 kb on + strand at 169.460 kb on + strand at 169.461 kb on - strand at 169.462 kb on + strand at 169.851 kb on - strand, within EX31_RS06900 at 170.054 kb on + strand, within EX31_RS06900 at 170.171 kb on + strand, within EX31_RS06900 at 170.172 kb on - strand, within EX31_RS06900 at 170.273 kb on + strand, within EX31_RS06900 at 170.318 kb on + strand, within EX31_RS06900 at 170.352 kb on - strand, within EX31_RS06900 at 170.385 kb on - strand, within EX31_RS06900 at 170.454 kb on - strand, within EX31_RS06900 at 170.503 kb on - strand, within EX31_RS06900 at 170.503 kb on - strand, within EX31_RS06900 at 170.546 kb on + strand, within EX31_RS06900 at 170.546 kb on + strand, within EX31_RS06900 at 170.547 kb on - strand, within EX31_RS06900 at 170.548 kb on + strand, within EX31_RS06900 at 170.548 kb on + strand, within EX31_RS06900 at 170.548 kb on + strand, within EX31_RS06900 at 170.549 kb on - strand, within EX31_RS06900 at 170.630 kb on + strand, within EX31_RS06900 at 170.630 kb on + strand, within EX31_RS06900 at 170.630 kb on + strand, within EX31_RS06900 at 170.631 kb on - strand, within EX31_RS06900 at 170.753 kb on - strand, within EX31_RS06900 at 170.881 kb on + strand, within EX31_RS06900 at 170.882 kb on - strand, within EX31_RS06900 at 170.905 kb on + strand at 171.115 kb on + strand at 171.116 kb on - strand at 171.116 kb on - strand at 171.128 kb on - strand at 171.156 kb on - strand at 171.156 kb on - strand at 171.170 kb on + strand at 171.260 kb on + strand at 171.261 kb on - strand at 171.282 kb on + strand at 171.282 kb on + strand at 171.285 kb on + strand at 171.331 kb on - strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.569 kb on - strand, within EX31_RS06905 at 171.571 kb on + strand, within EX31_RS06905 at 171.571 kb on + strand, within EX31_RS06905 at 171.571 kb on + strand, within EX31_RS06905 at 171.626 kb on + strand, within EX31_RS06905 at 171.626 kb on + strand, within EX31_RS06905 at 171.626 kb on + strand, within EX31_RS06905 at 171.626 kb on + strand, within EX31_RS06905 at 171.627 kb on - strand, within EX31_RS06905 at 171.706 kb on + strand at 171.709 kb on + strand at 171.709 kb on + strand at 171.710 kb on - strand at 171.765 kb on - strand at 171.783 kb on + strand at 171.783 kb on + strand at 171.832 kb on + strand at 171.836 kb on + strand at 171.836 kb on + strand at 171.837 kb on - strand at 171.837 kb on - strand at 171.857 kb on - strand at 171.860 kb on + strand at 171.860 kb on + strand at 171.860 kb on + strand at 171.915 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 168,374 + EX31_RS06895 0.13 +0.7 168,449 + EX31_RS06895 0.20 +0.6 168,450 - EX31_RS06895 0.20 -0.4 168,592 + EX31_RS06895 0.34 +0.9 168,593 - EX31_RS06895 0.34 +0.3 168,653 + EX31_RS06895 0.40 +1.0 168,654 - EX31_RS06895 0.40 -1.7 168,702 + EX31_RS06895 0.44 +0.9 169,026 + EX31_RS06895 0.75 +0.5 169,026 + EX31_RS06895 0.75 -1.5 169,026 + EX31_RS06895 0.75 +0.2 169,026 + EX31_RS06895 0.75 -0.5 169,040 - EX31_RS06895 0.76 +0.5 169,118 - EX31_RS06895 0.83 +0.2 169,118 - EX31_RS06895 0.83 +1.4 169,118 - EX31_RS06895 0.83 -0.9 169,162 + EX31_RS06895 0.88 -0.2 169,216 + -0.5 169,217 - +0.3 169,262 + -0.8 169,263 - -0.6 169,434 - +0.4 169,460 + +0.7 169,460 + +0.8 169,461 - +0.2 169,462 + -1.7 169,851 - EX31_RS06900 0.29 -0.6 170,054 + EX31_RS06900 0.41 -0.3 170,171 + EX31_RS06900 0.48 -1.2 170,172 - EX31_RS06900 0.48 +0.6 170,273 + EX31_RS06900 0.54 +0.0 170,318 + EX31_RS06900 0.56 -2.0 170,352 - EX31_RS06900 0.58 -0.8 170,385 - EX31_RS06900 0.60 -0.8 170,454 - EX31_RS06900 0.64 -0.1 170,503 - EX31_RS06900 0.67 -0.8 170,503 - EX31_RS06900 0.67 +0.7 170,546 + EX31_RS06900 0.70 -0.8 170,546 + EX31_RS06900 0.70 +0.3 170,547 - EX31_RS06900 0.70 -2.1 170,548 + EX31_RS06900 0.70 -0.5 170,548 + EX31_RS06900 0.70 +0.7 170,548 + EX31_RS06900 0.70 -0.9 170,549 - EX31_RS06900 0.70 -0.3 170,630 + EX31_RS06900 0.74 -0.2 170,630 + EX31_RS06900 0.74 -1.9 170,630 + EX31_RS06900 0.74 +0.4 170,631 - EX31_RS06900 0.75 +0.1 170,753 - EX31_RS06900 0.82 -0.6 170,881 + EX31_RS06900 0.89 -0.8 170,882 - EX31_RS06900 0.89 +0.2 170,905 + +0.2 171,115 + -1.1 171,116 - +0.3 171,116 - +0.3 171,128 - +0.0 171,156 - -0.9 171,156 - +0.4 171,170 + +0.4 171,260 + -0.2 171,261 - -0.4 171,282 + -1.9 171,282 + -0.8 171,285 + -0.5 171,331 - EX31_RS06905 0.16 -1.7 171,568 + EX31_RS06905 0.67 +0.8 171,568 + EX31_RS06905 0.67 +0.4 171,568 + EX31_RS06905 0.67 +0.1 171,568 + EX31_RS06905 0.67 -0.1 171,568 + EX31_RS06905 0.67 +0.1 171,568 + EX31_RS06905 0.67 -2.9 171,569 - EX31_RS06905 0.68 +1.0 171,571 + EX31_RS06905 0.68 +0.8 171,571 + EX31_RS06905 0.68 -2.1 171,571 + EX31_RS06905 0.68 -0.0 171,626 + EX31_RS06905 0.80 -2.4 171,626 + EX31_RS06905 0.80 -0.3 171,626 + EX31_RS06905 0.80 -0.8 171,626 + EX31_RS06905 0.80 +0.0 171,627 - EX31_RS06905 0.80 +1.6 171,706 + +0.1 171,709 + -0.1 171,709 + -0.5 171,710 - -1.7 171,765 - +0.2 171,783 + +1.9 171,783 + +2.4 171,832 + +0.9 171,836 + -2.0 171,836 + -0.9 171,837 - -0.7 171,837 - -0.5 171,857 - +0.3 171,860 + -0.4 171,860 + +1.3 171,860 + -0.9 171,915 + +0.2
Or see this region's nucleotide sequence