Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06815 and EX31_RS06820 are separated by 18 nucleotides EX31_RS06820 and EX31_RS06825 are separated by 13 nucleotides EX31_RS06825 and EX31_RS06830 are separated by 38 nucleotides
EX31_RS06815: EX31_RS06815 - argininosuccinate lyase, at 150,616 to 152,043
_RS06815
EX31_RS06820: EX31_RS06820 - amino acid ABC transporter permease, at 152,062 to 152,934
_RS06820
EX31_RS06825: EX31_RS06825 - amino acid ABC transporter ATP-binding protein, at 152,948 to 153,712
_RS06825
EX31_RS06830: EX31_RS06830 - ABC transporter substrate-binding protein, at 153,751 to 154,572
_RS06830
Position (kb) 152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 151.065 kb on + strand, within EX31_RS06815 at 151.066 kb on - strand, within EX31_RS06815 at 151.071 kb on + strand, within EX31_RS06815 at 151.072 kb on - strand, within EX31_RS06815 at 151.090 kb on - strand, within EX31_RS06815 at 151.576 kb on + strand, within EX31_RS06815 at 151.605 kb on + strand, within EX31_RS06815 at 151.605 kb on + strand, within EX31_RS06815 at 151.606 kb on - strand, within EX31_RS06815 at 151.606 kb on - strand, within EX31_RS06815 at 151.637 kb on + strand, within EX31_RS06815 at 151.638 kb on - strand, within EX31_RS06815 at 151.668 kb on + strand, within EX31_RS06815 at 151.719 kb on + strand, within EX31_RS06815 at 151.719 kb on + strand, within EX31_RS06815 at 151.720 kb on - strand, within EX31_RS06815 at 151.821 kb on + strand, within EX31_RS06815 at 151.821 kb on + strand, within EX31_RS06815 at 151.821 kb on + strand, within EX31_RS06815 at 151.822 kb on - strand, within EX31_RS06815 at 151.865 kb on + strand, within EX31_RS06815 at 151.865 kb on + strand, within EX31_RS06815 at 152.017 kb on - strand at 152.018 kb on + strand at 152.018 kb on + strand at 152.018 kb on + strand at 152.019 kb on - strand at 152.024 kb on - strand at 152.039 kb on + strand at 152.128 kb on + strand at 152.128 kb on + strand at 152.143 kb on + strand at 152.147 kb on - strand at 152.233 kb on + strand, within EX31_RS06820 at 152.392 kb on + strand, within EX31_RS06820 at 152.394 kb on + strand, within EX31_RS06820 at 152.394 kb on + strand, within EX31_RS06820 at 152.394 kb on + strand, within EX31_RS06820 at 152.394 kb on + strand, within EX31_RS06820 at 152.563 kb on + strand, within EX31_RS06820 at 152.563 kb on + strand, within EX31_RS06820 at 152.776 kb on + strand, within EX31_RS06820 at 152.776 kb on + strand, within EX31_RS06820 at 152.777 kb on - strand, within EX31_RS06820 at 152.794 kb on + strand, within EX31_RS06820 at 152.794 kb on + strand, within EX31_RS06820 at 152.795 kb on - strand, within EX31_RS06820 at 152.896 kb on + strand at 152.896 kb on + strand at 152.959 kb on + strand at 152.980 kb on + strand at 152.984 kb on + strand at 152.984 kb on + strand at 152.985 kb on - strand at 152.985 kb on - strand at 153.231 kb on + strand, within EX31_RS06825 at 153.231 kb on + strand, within EX31_RS06825 at 153.232 kb on - strand, within EX31_RS06825 at 153.370 kb on + strand, within EX31_RS06825 at 153.573 kb on + strand, within EX31_RS06825 at 153.574 kb on - strand, within EX31_RS06825 at 153.630 kb on + strand, within EX31_RS06825 at 153.631 kb on - strand, within EX31_RS06825 at 153.652 kb on + strand at 153.849 kb on + strand, within EX31_RS06830
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 151,065 + EX31_RS06815 0.31 -0.0 151,066 - EX31_RS06815 0.32 -0.6 151,071 + EX31_RS06815 0.32 +0.4 151,072 - EX31_RS06815 0.32 -2.5 151,090 - EX31_RS06815 0.33 +0.1 151,576 + EX31_RS06815 0.67 +1.2 151,605 + EX31_RS06815 0.69 -1.7 151,605 + EX31_RS06815 0.69 -0.2 151,606 - EX31_RS06815 0.69 -1.1 151,606 - EX31_RS06815 0.69 +0.4 151,637 + EX31_RS06815 0.71 +0.6 151,638 - EX31_RS06815 0.72 -0.6 151,668 + EX31_RS06815 0.74 +0.3 151,719 + EX31_RS06815 0.77 +0.2 151,719 + EX31_RS06815 0.77 -0.7 151,720 - EX31_RS06815 0.77 -0.2 151,821 + EX31_RS06815 0.84 +0.4 151,821 + EX31_RS06815 0.84 +0.0 151,821 + EX31_RS06815 0.84 -1.0 151,822 - EX31_RS06815 0.84 -1.6 151,865 + EX31_RS06815 0.87 -1.4 151,865 + EX31_RS06815 0.87 +0.4 152,017 - +1.1 152,018 + -0.7 152,018 + -0.5 152,018 + +0.4 152,019 - +0.4 152,024 - +0.0 152,039 + -0.3 152,128 + +0.7 152,128 + +0.1 152,143 + -1.6 152,147 - -1.2 152,233 + EX31_RS06820 0.20 -1.2 152,392 + EX31_RS06820 0.38 -3.2 152,394 + EX31_RS06820 0.38 -2.5 152,394 + EX31_RS06820 0.38 -0.9 152,394 + EX31_RS06820 0.38 -0.9 152,394 + EX31_RS06820 0.38 -0.1 152,563 + EX31_RS06820 0.57 +0.6 152,563 + EX31_RS06820 0.57 -0.9 152,776 + EX31_RS06820 0.82 -1.2 152,776 + EX31_RS06820 0.82 -0.4 152,777 - EX31_RS06820 0.82 -0.6 152,794 + EX31_RS06820 0.84 +1.2 152,794 + EX31_RS06820 0.84 +0.0 152,795 - EX31_RS06820 0.84 -2.0 152,896 + +0.0 152,896 + +0.2 152,959 + +0.7 152,980 + +1.5 152,984 + +0.5 152,984 + -0.4 152,985 - -2.1 152,985 - -0.2 153,231 + EX31_RS06825 0.37 -1.2 153,231 + EX31_RS06825 0.37 -0.5 153,232 - EX31_RS06825 0.37 -1.1 153,370 + EX31_RS06825 0.55 -0.3 153,573 + EX31_RS06825 0.82 +1.2 153,574 - EX31_RS06825 0.82 -0.2 153,630 + EX31_RS06825 0.89 +0.8 153,631 - EX31_RS06825 0.89 -1.1 153,652 + -0.4 153,849 + EX31_RS06830 0.12 -0.8
Or see this region's nucleotide sequence