Strain Fitness in Rahnella sp. WP5 around EX31_RS06820

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06815 and EX31_RS06820 are separated by 18 nucleotidesEX31_RS06820 and EX31_RS06825 are separated by 13 nucleotidesEX31_RS06825 and EX31_RS06830 are separated by 38 nucleotides EX31_RS06815: EX31_RS06815 - argininosuccinate lyase, at 150,616 to 152,043 _RS06815 EX31_RS06820: EX31_RS06820 - amino acid ABC transporter permease, at 152,062 to 152,934 _RS06820 EX31_RS06825: EX31_RS06825 - amino acid ABC transporter ATP-binding protein, at 152,948 to 153,712 _RS06825 EX31_RS06830: EX31_RS06830 - ABC transporter substrate-binding protein, at 153,751 to 154,572 _RS06830 Position (kb) 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1at 151.065 kb on + strand, within EX31_RS06815at 151.066 kb on - strand, within EX31_RS06815at 151.071 kb on + strand, within EX31_RS06815at 151.072 kb on - strand, within EX31_RS06815at 151.090 kb on - strand, within EX31_RS06815at 151.576 kb on + strand, within EX31_RS06815at 151.605 kb on + strand, within EX31_RS06815at 151.605 kb on + strand, within EX31_RS06815at 151.606 kb on - strand, within EX31_RS06815at 151.606 kb on - strand, within EX31_RS06815at 151.637 kb on + strand, within EX31_RS06815at 151.638 kb on - strand, within EX31_RS06815at 151.668 kb on + strand, within EX31_RS06815at 151.719 kb on + strand, within EX31_RS06815at 151.719 kb on + strand, within EX31_RS06815at 151.720 kb on - strand, within EX31_RS06815at 151.821 kb on + strand, within EX31_RS06815at 151.821 kb on + strand, within EX31_RS06815at 151.821 kb on + strand, within EX31_RS06815at 151.822 kb on - strand, within EX31_RS06815at 151.865 kb on + strand, within EX31_RS06815at 151.865 kb on + strand, within EX31_RS06815at 152.017 kb on - strandat 152.018 kb on + strandat 152.018 kb on + strandat 152.018 kb on + strandat 152.019 kb on - strandat 152.024 kb on - strandat 152.039 kb on + strandat 152.128 kb on + strandat 152.128 kb on + strandat 152.143 kb on + strandat 152.147 kb on - strandat 152.233 kb on + strand, within EX31_RS06820at 152.392 kb on + strand, within EX31_RS06820at 152.394 kb on + strand, within EX31_RS06820at 152.394 kb on + strand, within EX31_RS06820at 152.394 kb on + strand, within EX31_RS06820at 152.394 kb on + strand, within EX31_RS06820at 152.563 kb on + strand, within EX31_RS06820at 152.563 kb on + strand, within EX31_RS06820at 152.776 kb on + strand, within EX31_RS06820at 152.776 kb on + strand, within EX31_RS06820at 152.777 kb on - strand, within EX31_RS06820at 152.794 kb on + strand, within EX31_RS06820at 152.794 kb on + strand, within EX31_RS06820at 152.795 kb on - strand, within EX31_RS06820at 152.896 kb on + strandat 152.896 kb on + strandat 152.959 kb on + strandat 152.980 kb on + strandat 152.984 kb on + strandat 152.984 kb on + strandat 152.985 kb on - strandat 152.985 kb on - strandat 153.231 kb on + strand, within EX31_RS06825at 153.231 kb on + strand, within EX31_RS06825at 153.232 kb on - strand, within EX31_RS06825at 153.370 kb on + strand, within EX31_RS06825at 153.573 kb on + strand, within EX31_RS06825at 153.574 kb on - strand, within EX31_RS06825at 153.630 kb on + strand, within EX31_RS06825at 153.631 kb on - strand, within EX31_RS06825at 153.652 kb on + strandat 153.849 kb on + strand, within EX31_RS06830

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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151,065 + EX31_RS06815 0.31 -0.0
151,066 - EX31_RS06815 0.32 -0.6
151,071 + EX31_RS06815 0.32 +0.4
151,072 - EX31_RS06815 0.32 -2.5
151,090 - EX31_RS06815 0.33 +0.1
151,576 + EX31_RS06815 0.67 +1.2
151,605 + EX31_RS06815 0.69 -1.7
151,605 + EX31_RS06815 0.69 -0.2
151,606 - EX31_RS06815 0.69 -1.1
151,606 - EX31_RS06815 0.69 +0.4
151,637 + EX31_RS06815 0.71 +0.6
151,638 - EX31_RS06815 0.72 -0.6
151,668 + EX31_RS06815 0.74 +0.3
151,719 + EX31_RS06815 0.77 +0.2
151,719 + EX31_RS06815 0.77 -0.7
151,720 - EX31_RS06815 0.77 -0.2
151,821 + EX31_RS06815 0.84 +0.4
151,821 + EX31_RS06815 0.84 +0.0
151,821 + EX31_RS06815 0.84 -1.0
151,822 - EX31_RS06815 0.84 -1.6
151,865 + EX31_RS06815 0.87 -1.4
151,865 + EX31_RS06815 0.87 +0.4
152,017 - +1.1
152,018 + -0.7
152,018 + -0.5
152,018 + +0.4
152,019 - +0.4
152,024 - +0.0
152,039 + -0.3
152,128 + +0.7
152,128 + +0.1
152,143 + -1.6
152,147 - -1.2
152,233 + EX31_RS06820 0.20 -1.2
152,392 + EX31_RS06820 0.38 -3.2
152,394 + EX31_RS06820 0.38 -2.5
152,394 + EX31_RS06820 0.38 -0.9
152,394 + EX31_RS06820 0.38 -0.9
152,394 + EX31_RS06820 0.38 -0.1
152,563 + EX31_RS06820 0.57 +0.6
152,563 + EX31_RS06820 0.57 -0.9
152,776 + EX31_RS06820 0.82 -1.2
152,776 + EX31_RS06820 0.82 -0.4
152,777 - EX31_RS06820 0.82 -0.6
152,794 + EX31_RS06820 0.84 +1.2
152,794 + EX31_RS06820 0.84 +0.0
152,795 - EX31_RS06820 0.84 -2.0
152,896 + +0.0
152,896 + +0.2
152,959 + +0.7
152,980 + +1.5
152,984 + +0.5
152,984 + -0.4
152,985 - -2.1
152,985 - -0.2
153,231 + EX31_RS06825 0.37 -1.2
153,231 + EX31_RS06825 0.37 -0.5
153,232 - EX31_RS06825 0.37 -1.1
153,370 + EX31_RS06825 0.55 -0.3
153,573 + EX31_RS06825 0.82 +1.2
153,574 - EX31_RS06825 0.82 -0.2
153,630 + EX31_RS06825 0.89 +0.8
153,631 - EX31_RS06825 0.89 -1.1
153,652 + -0.4
153,849 + EX31_RS06830 0.12 -0.8

Or see this region's nucleotide sequence