Strain Fitness in Rahnella sp. WP5 around EX31_RS06455

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06450 and EX31_RS06455 are separated by 16 nucleotidesEX31_RS06455 and EX31_RS06460 overlap by 4 nucleotidesEX31_RS06460 and EX31_RS06465 are separated by 20 nucleotides EX31_RS06450: EX31_RS06450 - ABC transporter substrate-binding protein, at 59,636 to 60,916 _RS06450 EX31_RS06455: EX31_RS06455 - sugar ABC transporter permease, at 60,933 to 61,844 _RS06455 EX31_RS06460: EX31_RS06460 - carbohydrate ABC transporter permease, at 61,841 to 62,656 _RS06460 EX31_RS06465: EX31_RS06465 - hypothetical protein, at 62,677 to 63,606 _RS06465 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 60.084 kb on - strand, within EX31_RS06450at 60.084 kb on - strand, within EX31_RS06450at 60.713 kb on + strand, within EX31_RS06450at 60.713 kb on + strand, within EX31_RS06450at 60.714 kb on - strand, within EX31_RS06450at 60.761 kb on + strand, within EX31_RS06450at 60.785 kb on + strand, within EX31_RS06450at 60.785 kb on + strand, within EX31_RS06450at 60.786 kb on - strand, within EX31_RS06450at 60.786 kb on - strand, within EX31_RS06450at 60.914 kb on + strandat 60.915 kb on - strandat 60.986 kb on - strandat 60.994 kb on - strandat 61.160 kb on + strand, within EX31_RS06455at 61.160 kb on + strand, within EX31_RS06455at 61.160 kb on + strand, within EX31_RS06455at 61.160 kb on + strand, within EX31_RS06455at 61.160 kb on + strand, within EX31_RS06455at 61.161 kb on - strand, within EX31_RS06455at 61.161 kb on - strand, within EX31_RS06455at 61.161 kb on - strand, within EX31_RS06455at 61.434 kb on + strand, within EX31_RS06455at 61.561 kb on - strand, within EX31_RS06455at 61.561 kb on - strand, within EX31_RS06455at 61.607 kb on - strand, within EX31_RS06455at 61.607 kb on - strand, within EX31_RS06455at 61.607 kb on - strand, within EX31_RS06455at 61.710 kb on + strand, within EX31_RS06455at 61.711 kb on - strand, within EX31_RS06455at 61.711 kb on - strand, within EX31_RS06455at 61.775 kb on - strandat 61.900 kb on - strandat 62.036 kb on + strand, within EX31_RS06460at 62.050 kb on + strand, within EX31_RS06460at 62.050 kb on + strand, within EX31_RS06460at 62.178 kb on + strand, within EX31_RS06460at 62.178 kb on + strand, within EX31_RS06460at 62.207 kb on + strand, within EX31_RS06460at 62.208 kb on - strand, within EX31_RS06460at 62.208 kb on - strand, within EX31_RS06460at 62.308 kb on + strand, within EX31_RS06460at 62.308 kb on + strand, within EX31_RS06460at 62.309 kb on - strand, within EX31_RS06460at 62.366 kb on + strand, within EX31_RS06460at 62.367 kb on - strand, within EX31_RS06460at 62.367 kb on - strand, within EX31_RS06460at 62.385 kb on - strand, within EX31_RS06460at 62.408 kb on + strand, within EX31_RS06460at 62.466 kb on + strand, within EX31_RS06460at 62.598 kb on + strandat 62.635 kb on + strandat 62.824 kb on + strand, within EX31_RS06465

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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60,084 - EX31_RS06450 0.35 -1.3
60,084 - EX31_RS06450 0.35 +0.2
60,713 + EX31_RS06450 0.84 -2.4
60,713 + EX31_RS06450 0.84 -0.6
60,714 - EX31_RS06450 0.84 -0.4
60,761 + EX31_RS06450 0.88 +0.4
60,785 + EX31_RS06450 0.90 -0.4
60,785 + EX31_RS06450 0.90 +0.0
60,786 - EX31_RS06450 0.90 +0.0
60,786 - EX31_RS06450 0.90 +0.4
60,914 + -1.2
60,915 - -2.7
60,986 - -0.5
60,994 - -1.4
61,160 + EX31_RS06455 0.25 -0.6
61,160 + EX31_RS06455 0.25 +0.0
61,160 + EX31_RS06455 0.25 -0.6
61,160 + EX31_RS06455 0.25 -2.3
61,160 + EX31_RS06455 0.25 +0.5
61,161 - EX31_RS06455 0.25 +1.5
61,161 - EX31_RS06455 0.25 -0.8
61,161 - EX31_RS06455 0.25 -1.1
61,434 + EX31_RS06455 0.55 -2.5
61,561 - EX31_RS06455 0.69 -0.2
61,561 - EX31_RS06455 0.69 -1.3
61,607 - EX31_RS06455 0.74 -1.1
61,607 - EX31_RS06455 0.74 -0.4
61,607 - EX31_RS06455 0.74 +0.3
61,710 + EX31_RS06455 0.85 +0.6
61,711 - EX31_RS06455 0.85 -0.4
61,711 - EX31_RS06455 0.85 +1.0
61,775 - -0.7
61,900 - +0.1
62,036 + EX31_RS06460 0.24 +1.6
62,050 + EX31_RS06460 0.26 -0.9
62,050 + EX31_RS06460 0.26 -2.2
62,178 + EX31_RS06460 0.41 -0.2
62,178 + EX31_RS06460 0.41 +1.2
62,207 + EX31_RS06460 0.45 -0.7
62,208 - EX31_RS06460 0.45 -0.9
62,208 - EX31_RS06460 0.45 +0.6
62,308 + EX31_RS06460 0.57 -0.2
62,308 + EX31_RS06460 0.57 -1.1
62,309 - EX31_RS06460 0.57 +1.1
62,366 + EX31_RS06460 0.64 -0.2
62,367 - EX31_RS06460 0.64 +1.9
62,367 - EX31_RS06460 0.64 +0.1
62,385 - EX31_RS06460 0.67 -0.1
62,408 + EX31_RS06460 0.69 +0.4
62,466 + EX31_RS06460 0.77 -1.5
62,598 + +0.7
62,635 + -0.7
62,824 + EX31_RS06465 0.16 -0.5

Or see this region's nucleotide sequence