Strain Fitness in Rahnella sp. WP5 around EX31_RS01370

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01355 and EX31_RS01360 are separated by 12 nucleotidesEX31_RS01360 and EX31_RS01365 overlap by 23 nucleotidesEX31_RS01365 and EX31_RS01370 are separated by 51 nucleotidesEX31_RS01370 and EX31_RS01375 are separated by 221 nucleotides EX31_RS01355: EX31_RS01355 - type VI secretion system tube protein Hcp, at 303,633 to 304,124 _RS01355 EX31_RS01360: EX31_RS01360 - DUF2778 domain-containing protein, at 304,137 to 304,661 _RS01360 EX31_RS01365: EX31_RS01365 - hypothetical protein, at 304,639 to 304,950 _RS01365 EX31_RS01370: EX31_RS01370 - oxidoreductase, at 305,002 to 306,084 _RS01370 EX31_RS01375: EX31_RS01375 - sugar ABC transporter substrate-binding protein, at 306,306 to 307,373 _RS01375 Position (kb) 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 304.020 kb on - strand, within EX31_RS01355at 304.058 kb on + strand, within EX31_RS01355at 304.059 kb on - strand, within EX31_RS01355at 304.068 kb on + strand, within EX31_RS01355at 304.082 kb on + strandat 304.082 kb on + strandat 304.083 kb on - strandat 304.116 kb on + strandat 304.116 kb on + strandat 304.116 kb on + strandat 304.237 kb on + strand, within EX31_RS01360at 304.258 kb on + strand, within EX31_RS01360at 304.258 kb on + strand, within EX31_RS01360at 304.258 kb on + strand, within EX31_RS01360at 304.258 kb on + strand, within EX31_RS01360at 304.259 kb on - strand, within EX31_RS01360at 304.259 kb on - strand, within EX31_RS01360at 304.298 kb on + strand, within EX31_RS01360at 304.364 kb on + strand, within EX31_RS01360at 304.405 kb on - strand, within EX31_RS01360at 304.437 kb on + strand, within EX31_RS01360at 304.437 kb on + strand, within EX31_RS01360at 304.438 kb on - strand, within EX31_RS01360at 304.438 kb on - strand, within EX31_RS01360at 304.438 kb on - strand, within EX31_RS01360at 304.438 kb on - strand, within EX31_RS01360at 304.527 kb on + strand, within EX31_RS01360at 304.527 kb on + strand, within EX31_RS01360at 304.527 kb on + strand, within EX31_RS01360at 304.527 kb on + strand, within EX31_RS01360at 304.527 kb on + strand, within EX31_RS01360at 304.527 kb on + strand, within EX31_RS01360at 304.527 kb on + strand, within EX31_RS01360at 304.527 kb on + strand, within EX31_RS01360at 304.528 kb on - strand, within EX31_RS01360at 304.528 kb on - strand, within EX31_RS01360at 304.528 kb on - strand, within EX31_RS01360at 304.528 kb on - strand, within EX31_RS01360at 304.528 kb on - strand, within EX31_RS01360at 304.578 kb on - strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.594 kb on + strand, within EX31_RS01360at 304.595 kb on - strand, within EX31_RS01360at 304.595 kb on - strand, within EX31_RS01360at 304.595 kb on - strand, within EX31_RS01360at 304.595 kb on - strand, within EX31_RS01360at 304.595 kb on - strand, within EX31_RS01360at 304.595 kb on - strand, within EX31_RS01360at 304.608 kb on + strand, within EX31_RS01360at 304.608 kb on + strand, within EX31_RS01360at 304.652 kb on + strandat 304.652 kb on + strandat 304.660 kb on - strandat 304.664 kb on + strandat 304.665 kb on - strandat 304.699 kb on + strand, within EX31_RS01365at 304.699 kb on + strand, within EX31_RS01365at 304.699 kb on + strand, within EX31_RS01365at 304.699 kb on + strand, within EX31_RS01365at 304.703 kb on - strand, within EX31_RS01365at 304.738 kb on + strand, within EX31_RS01365at 304.744 kb on + strand, within EX31_RS01365at 304.744 kb on + strand, within EX31_RS01365at 304.744 kb on + strand, within EX31_RS01365at 304.744 kb on + strand, within EX31_RS01365at 304.745 kb on - strand, within EX31_RS01365at 304.745 kb on - strand, within EX31_RS01365at 304.745 kb on - strand, within EX31_RS01365at 304.745 kb on - strand, within EX31_RS01365at 304.772 kb on - strand, within EX31_RS01365at 304.772 kb on - strand, within EX31_RS01365at 304.833 kb on + strand, within EX31_RS01365at 304.834 kb on - strand, within EX31_RS01365at 304.834 kb on - strand, within EX31_RS01365at 304.866 kb on - strand, within EX31_RS01365at 304.920 kb on + strandat 304.942 kb on - strandat 304.943 kb on + strandat 304.948 kb on + strandat 304.948 kb on + strandat 304.987 kb on - strandat 305.003 kb on + strandat 305.004 kb on - strandat 305.004 kb on - strandat 305.008 kb on - strandat 305.180 kb on + strand, within EX31_RS01370at 305.246 kb on + strand, within EX31_RS01370at 305.334 kb on + strand, within EX31_RS01370at 305.537 kb on - strand, within EX31_RS01370at 305.588 kb on + strand, within EX31_RS01370at 305.588 kb on + strand, within EX31_RS01370at 305.589 kb on - strand, within EX31_RS01370at 305.610 kb on + strand, within EX31_RS01370at 305.685 kb on + strand, within EX31_RS01370at 305.688 kb on - strand, within EX31_RS01370at 305.688 kb on - strand, within EX31_RS01370at 305.858 kb on - strand, within EX31_RS01370at 305.999 kb on + strandat 306.075 kb on + strandat 306.190 kb on - strandat 306.233 kb on + strandat 306.233 kb on + strandat 306.233 kb on + strandat 306.234 kb on - strandat 306.234 kb on - strandat 306.301 kb on + strandat 306.374 kb on + strandat 306.375 kb on - strandat 306.407 kb on + strandat 306.407 kb on + strandat 306.408 kb on - strandat 306.422 kb on + strand, within EX31_RS01375at 306.455 kb on + strand, within EX31_RS01375at 306.455 kb on + strand, within EX31_RS01375at 306.456 kb on - strand, within EX31_RS01375at 306.483 kb on - strand, within EX31_RS01375at 306.518 kb on + strand, within EX31_RS01375at 306.518 kb on + strand, within EX31_RS01375at 306.518 kb on + strand, within EX31_RS01375at 306.518 kb on + strand, within EX31_RS01375at 306.518 kb on + strand, within EX31_RS01375at 306.519 kb on - strand, within EX31_RS01375at 306.519 kb on - strand, within EX31_RS01375at 306.519 kb on - strand, within EX31_RS01375at 306.519 kb on - strand, within EX31_RS01375at 306.519 kb on - strand, within EX31_RS01375at 306.519 kb on - strand, within EX31_RS01375at 306.586 kb on - strand, within EX31_RS01375at 306.593 kb on + strand, within EX31_RS01375at 306.594 kb on - strand, within EX31_RS01375at 306.597 kb on - strand, within EX31_RS01375at 306.597 kb on - strand, within EX31_RS01375at 306.644 kb on + strand, within EX31_RS01375at 306.644 kb on + strand, within EX31_RS01375at 306.644 kb on + strand, within EX31_RS01375at 306.645 kb on - strand, within EX31_RS01375at 306.645 kb on - strand, within EX31_RS01375at 306.645 kb on - strand, within EX31_RS01375at 306.645 kb on - strand, within EX31_RS01375at 306.782 kb on + strand, within EX31_RS01375at 306.846 kb on + strand, within EX31_RS01375at 306.846 kb on + strand, within EX31_RS01375at 306.846 kb on + strand, within EX31_RS01375at 306.847 kb on - strand, within EX31_RS01375at 306.848 kb on + strand, within EX31_RS01375at 306.961 kb on - strand, within EX31_RS01375at 307.021 kb on - strand, within EX31_RS01375at 307.021 kb on - strand, within EX31_RS01375at 307.021 kb on - strand, within EX31_RS01375at 307.022 kb on + strand, within EX31_RS01375at 307.062 kb on + strand, within EX31_RS01375at 307.062 kb on + strand, within EX31_RS01375

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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304,020 - EX31_RS01355 0.79 -0.5
304,058 + EX31_RS01355 0.86 -0.8
304,059 - EX31_RS01355 0.87 -0.5
304,068 + EX31_RS01355 0.88 +2.3
304,082 + -0.0
304,082 + +0.1
304,083 - +0.6
304,116 + +0.4
304,116 + -0.4
304,116 + -0.5
304,237 + EX31_RS01360 0.19 -0.6
304,258 + EX31_RS01360 0.23 +0.6
304,258 + EX31_RS01360 0.23 +0.1
304,258 + EX31_RS01360 0.23 -1.6
304,258 + EX31_RS01360 0.23 +0.7
304,259 - EX31_RS01360 0.23 -0.2
304,259 - EX31_RS01360 0.23 -0.4
304,298 + EX31_RS01360 0.31 -1.2
304,364 + EX31_RS01360 0.43 +0.7
304,405 - EX31_RS01360 0.51 -0.5
304,437 + EX31_RS01360 0.57 +0.5
304,437 + EX31_RS01360 0.57 -0.2
304,438 - EX31_RS01360 0.57 -2.1
304,438 - EX31_RS01360 0.57 -0.9
304,438 - EX31_RS01360 0.57 +0.5
304,438 - EX31_RS01360 0.57 -0.1
304,527 + EX31_RS01360 0.74 -0.0
304,527 + EX31_RS01360 0.74 -0.4
304,527 + EX31_RS01360 0.74 -0.2
304,527 + EX31_RS01360 0.74 -1.5
304,527 + EX31_RS01360 0.74 +0.0
304,527 + EX31_RS01360 0.74 +0.3
304,527 + EX31_RS01360 0.74 +1.1
304,527 + EX31_RS01360 0.74 +0.1
304,528 - EX31_RS01360 0.74 -1.3
304,528 - EX31_RS01360 0.74 +0.4
304,528 - EX31_RS01360 0.74 +0.8
304,528 - EX31_RS01360 0.74 -0.1
304,528 - EX31_RS01360 0.74 -0.7
304,578 - EX31_RS01360 0.84 -0.6
304,594 + EX31_RS01360 0.87 +1.6
304,594 + EX31_RS01360 0.87 -0.8
304,594 + EX31_RS01360 0.87 -1.2
304,594 + EX31_RS01360 0.87 -1.8
304,594 + EX31_RS01360 0.87 -0.7
304,594 + EX31_RS01360 0.87 +0.5
304,594 + EX31_RS01360 0.87 -1.9
304,594 + EX31_RS01360 0.87 +0.0
304,594 + EX31_RS01360 0.87 -0.9
304,594 + EX31_RS01360 0.87 +0.4
304,594 + EX31_RS01360 0.87 -0.9
304,595 - EX31_RS01360 0.87 -0.6
304,595 - EX31_RS01360 0.87 -1.9
304,595 - EX31_RS01360 0.87 -1.9
304,595 - EX31_RS01360 0.87 -1.0
304,595 - EX31_RS01360 0.87 +0.1
304,595 - EX31_RS01360 0.87 -0.1
304,608 + EX31_RS01360 0.90 +0.3
304,608 + EX31_RS01360 0.90 -1.0
304,652 + -0.7
304,652 + +0.4
304,660 - +0.8
304,664 + -0.2
304,665 - +0.5
304,699 + EX31_RS01365 0.19 +1.8
304,699 + EX31_RS01365 0.19 +1.7
304,699 + EX31_RS01365 0.19 -0.2
304,699 + EX31_RS01365 0.19 -0.1
304,703 - EX31_RS01365 0.21 +1.2
304,738 + EX31_RS01365 0.32 +1.0
304,744 + EX31_RS01365 0.34 +0.6
304,744 + EX31_RS01365 0.34 -0.3
304,744 + EX31_RS01365 0.34 -0.1
304,744 + EX31_RS01365 0.34 -0.1
304,745 - EX31_RS01365 0.34 -0.3
304,745 - EX31_RS01365 0.34 -1.3
304,745 - EX31_RS01365 0.34 +0.8
304,745 - EX31_RS01365 0.34 -0.7
304,772 - EX31_RS01365 0.43 +0.5
304,772 - EX31_RS01365 0.43 +2.0
304,833 + EX31_RS01365 0.62 +1.0
304,834 - EX31_RS01365 0.62 -0.3
304,834 - EX31_RS01365 0.62 -0.9
304,866 - EX31_RS01365 0.73 -1.4
304,920 + -0.1
304,942 - +0.0
304,943 + +0.6
304,948 + +0.6
304,948 + -0.7
304,987 - -0.9
305,003 + +0.9
305,004 - +0.4
305,004 - +0.0
305,008 - -0.4
305,180 + EX31_RS01370 0.16 +0.1
305,246 + EX31_RS01370 0.23 -0.6
305,334 + EX31_RS01370 0.31 -0.2
305,537 - EX31_RS01370 0.49 +0.5
305,588 + EX31_RS01370 0.54 -1.6
305,588 + EX31_RS01370 0.54 -0.9
305,589 - EX31_RS01370 0.54 -0.6
305,610 + EX31_RS01370 0.56 +0.3
305,685 + EX31_RS01370 0.63 +0.1
305,688 - EX31_RS01370 0.63 -0.7
305,688 - EX31_RS01370 0.63 -0.5
305,858 - EX31_RS01370 0.79 -0.5
305,999 + +0.3
306,075 + +0.2
306,190 - +0.0
306,233 + +0.9
306,233 + -2.8
306,233 + +0.3
306,234 - -0.5
306,234 - +0.4
306,301 + +0.7
306,374 + -1.5
306,375 - -2.4
306,407 + -0.1
306,407 + -0.9
306,408 - +0.5
306,422 + EX31_RS01375 0.11 +0.3
306,455 + EX31_RS01375 0.14 -0.5
306,455 + EX31_RS01375 0.14 -0.3
306,456 - EX31_RS01375 0.14 +0.1
306,483 - EX31_RS01375 0.17 -0.1
306,518 + EX31_RS01375 0.20 +0.2
306,518 + EX31_RS01375 0.20 -0.7
306,518 + EX31_RS01375 0.20 +0.1
306,518 + EX31_RS01375 0.20 -1.0
306,518 + EX31_RS01375 0.20 -0.3
306,519 - EX31_RS01375 0.20 +0.3
306,519 - EX31_RS01375 0.20 +0.5
306,519 - EX31_RS01375 0.20 -0.8
306,519 - EX31_RS01375 0.20 +0.9
306,519 - EX31_RS01375 0.20 -1.7
306,519 - EX31_RS01375 0.20 +0.4
306,586 - EX31_RS01375 0.26 -1.5
306,593 + EX31_RS01375 0.27 -1.5
306,594 - EX31_RS01375 0.27 +0.2
306,597 - EX31_RS01375 0.27 -1.0
306,597 - EX31_RS01375 0.27 -0.8
306,644 + EX31_RS01375 0.32 -2.5
306,644 + EX31_RS01375 0.32 -1.1
306,644 + EX31_RS01375 0.32 -0.7
306,645 - EX31_RS01375 0.32 -1.8
306,645 - EX31_RS01375 0.32 +0.9
306,645 - EX31_RS01375 0.32 -0.4
306,645 - EX31_RS01375 0.32 +1.3
306,782 + EX31_RS01375 0.45 -0.2
306,846 + EX31_RS01375 0.51 +0.1
306,846 + EX31_RS01375 0.51 -2.6
306,846 + EX31_RS01375 0.51 -0.6
306,847 - EX31_RS01375 0.51 +0.4
306,848 + EX31_RS01375 0.51 -0.0
306,961 - EX31_RS01375 0.61 -1.0
307,021 - EX31_RS01375 0.67 -0.6
307,021 - EX31_RS01375 0.67 -2.7
307,021 - EX31_RS01375 0.67 +1.2
307,022 + EX31_RS01375 0.67 +0.0
307,062 + EX31_RS01375 0.71 -1.0
307,062 + EX31_RS01375 0.71 +1.1

Or see this region's nucleotide sequence