Strain Fitness in Rahnella sp. WP5 around EX31_RS01045

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01040 and EX31_RS01045 are separated by 13 nucleotidesEX31_RS01045 and EX31_RS01050 are separated by 138 nucleotides EX31_RS01040: EX31_RS01040 - serine hydrolase, at 228,850 to 229,737 _RS01040 EX31_RS01045: EX31_RS01045 - VOC family protein, at 229,751 to 230,146 _RS01045 EX31_RS01050: EX31_RS01050 - ROK family protein, at 230,285 to 231,283 _RS01050 Position (kb) 229 230 231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 228.805 kb on + strandat 228.805 kb on + strandat 228.805 kb on + strandat 228.806 kb on - strandat 228.868 kb on + strandat 228.869 kb on - strandat 228.869 kb on - strandat 228.874 kb on - strandat 229.024 kb on + strand, within EX31_RS01040at 229.024 kb on + strand, within EX31_RS01040at 229.026 kb on + strand, within EX31_RS01040at 229.026 kb on + strand, within EX31_RS01040at 229.027 kb on - strand, within EX31_RS01040at 229.027 kb on - strand, within EX31_RS01040at 229.027 kb on - strand, within EX31_RS01040at 229.027 kb on - strand, within EX31_RS01040at 229.087 kb on + strand, within EX31_RS01040at 229.363 kb on + strand, within EX31_RS01040at 229.364 kb on - strand, within EX31_RS01040at 229.381 kb on + strand, within EX31_RS01040at 229.382 kb on - strand, within EX31_RS01040at 229.437 kb on - strand, within EX31_RS01040at 229.489 kb on + strand, within EX31_RS01040at 229.627 kb on + strand, within EX31_RS01040at 229.671 kb on + strandat 229.682 kb on - strandat 229.777 kb on + strandat 229.777 kb on + strandat 229.778 kb on - strandat 229.778 kb on - strandat 229.778 kb on - strandat 229.786 kb on + strandat 229.786 kb on + strandat 229.786 kb on + strandat 229.809 kb on + strand, within EX31_RS01045at 229.810 kb on - strand, within EX31_RS01045at 229.822 kb on - strand, within EX31_RS01045at 229.833 kb on + strand, within EX31_RS01045at 229.844 kb on + strand, within EX31_RS01045at 229.845 kb on - strand, within EX31_RS01045at 229.887 kb on + strand, within EX31_RS01045at 229.887 kb on + strand, within EX31_RS01045at 229.887 kb on + strand, within EX31_RS01045at 229.888 kb on - strand, within EX31_RS01045at 229.888 kb on - strand, within EX31_RS01045at 229.888 kb on - strand, within EX31_RS01045at 229.893 kb on + strand, within EX31_RS01045at 229.894 kb on - strand, within EX31_RS01045at 229.894 kb on - strand, within EX31_RS01045at 230.230 kb on + strandat 230.251 kb on - strandat 230.269 kb on + strandat 230.305 kb on + strandat 230.347 kb on + strandat 230.348 kb on - strandat 230.511 kb on - strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.516 kb on + strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.517 kb on - strand, within EX31_RS01050at 230.518 kb on + strand, within EX31_RS01050at 230.519 kb on - strand, within EX31_RS01050at 230.549 kb on + strand, within EX31_RS01050at 230.582 kb on - strand, within EX31_RS01050at 230.664 kb on - strand, within EX31_RS01050at 230.822 kb on + strand, within EX31_RS01050at 230.823 kb on - strand, within EX31_RS01050at 230.823 kb on - strand, within EX31_RS01050at 230.849 kb on + strand, within EX31_RS01050at 230.906 kb on + strand, within EX31_RS01050at 230.906 kb on + strand, within EX31_RS01050at 230.907 kb on - strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.910 kb on + strand, within EX31_RS01050at 230.911 kb on - strand, within EX31_RS01050at 230.911 kb on - strand, within EX31_RS01050at 230.911 kb on - strand, within EX31_RS01050at 230.911 kb on - strand, within EX31_RS01050at 230.911 kb on - strand, within EX31_RS01050at 230.965 kb on - strand, within EX31_RS01050at 230.967 kb on + strand, within EX31_RS01050at 230.967 kb on + strand, within EX31_RS01050at 230.967 kb on + strand, within EX31_RS01050at 230.968 kb on - strand, within EX31_RS01050

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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228,805 + -1.4
228,805 + +0.1
228,805 + +0.3
228,806 - +0.0
228,868 + -4.3
228,869 - -0.8
228,869 - -0.5
228,874 - +0.4
229,024 + EX31_RS01040 0.20 -0.0
229,024 + EX31_RS01040 0.20 +0.0
229,026 + EX31_RS01040 0.20 +0.9
229,026 + EX31_RS01040 0.20 -0.3
229,027 - EX31_RS01040 0.20 +0.3
229,027 - EX31_RS01040 0.20 -0.9
229,027 - EX31_RS01040 0.20 +1.3
229,027 - EX31_RS01040 0.20 -1.2
229,087 + EX31_RS01040 0.27 -1.5
229,363 + EX31_RS01040 0.58 -0.0
229,364 - EX31_RS01040 0.58 +0.5
229,381 + EX31_RS01040 0.60 +1.0
229,382 - EX31_RS01040 0.60 +0.7
229,437 - EX31_RS01040 0.66 +0.3
229,489 + EX31_RS01040 0.72 +0.6
229,627 + EX31_RS01040 0.88 -0.0
229,671 + -0.3
229,682 - -0.1
229,777 + -1.6
229,777 + -0.3
229,778 - +0.3
229,778 - -0.8
229,778 - +0.0
229,786 + +0.6
229,786 + +1.6
229,786 + +0.2
229,809 + EX31_RS01045 0.15 -0.0
229,810 - EX31_RS01045 0.15 -0.8
229,822 - EX31_RS01045 0.18 +1.0
229,833 + EX31_RS01045 0.21 -0.7
229,844 + EX31_RS01045 0.23 -1.1
229,845 - EX31_RS01045 0.24 +0.0
229,887 + EX31_RS01045 0.34 +0.6
229,887 + EX31_RS01045 0.34 -1.6
229,887 + EX31_RS01045 0.34 -1.8
229,888 - EX31_RS01045 0.35 -0.3
229,888 - EX31_RS01045 0.35 -1.3
229,888 - EX31_RS01045 0.35 -0.5
229,893 + EX31_RS01045 0.36 -0.5
229,894 - EX31_RS01045 0.36 +0.5
229,894 - EX31_RS01045 0.36 -0.5
230,230 + -0.7
230,251 - +0.4
230,269 + +0.4
230,305 + -0.4
230,347 + +0.5
230,348 - -0.7
230,511 - EX31_RS01050 0.23 +0.0
230,516 + EX31_RS01050 0.23 -1.3
230,516 + EX31_RS01050 0.23 -1.2
230,516 + EX31_RS01050 0.23 -0.2
230,516 + EX31_RS01050 0.23 -0.4
230,516 + EX31_RS01050 0.23 +1.5
230,516 + EX31_RS01050 0.23 +1.3
230,516 + EX31_RS01050 0.23 +0.1
230,516 + EX31_RS01050 0.23 +0.4
230,517 - EX31_RS01050 0.23 -0.3
230,517 - EX31_RS01050 0.23 +0.8
230,517 - EX31_RS01050 0.23 +1.0
230,517 - EX31_RS01050 0.23 +0.5
230,517 - EX31_RS01050 0.23 -0.6
230,517 - EX31_RS01050 0.23 +0.7
230,517 - EX31_RS01050 0.23 -0.2
230,517 - EX31_RS01050 0.23 -1.8
230,517 - EX31_RS01050 0.23 -0.3
230,517 - EX31_RS01050 0.23 -1.6
230,517 - EX31_RS01050 0.23 -1.3
230,517 - EX31_RS01050 0.23 +0.9
230,517 - EX31_RS01050 0.23 -0.3
230,518 + EX31_RS01050 0.23 -0.4
230,519 - EX31_RS01050 0.23 +0.3
230,549 + EX31_RS01050 0.26 +0.7
230,582 - EX31_RS01050 0.30 -0.1
230,664 - EX31_RS01050 0.38 -1.2
230,822 + EX31_RS01050 0.54 +0.1
230,823 - EX31_RS01050 0.54 +0.2
230,823 - EX31_RS01050 0.54 -0.9
230,849 + EX31_RS01050 0.56 +0.1
230,906 + EX31_RS01050 0.62 -0.8
230,906 + EX31_RS01050 0.62 +0.2
230,907 - EX31_RS01050 0.62 +0.5
230,910 + EX31_RS01050 0.63 +0.4
230,910 + EX31_RS01050 0.63 +0.6
230,910 + EX31_RS01050 0.63 +1.0
230,910 + EX31_RS01050 0.63 +0.0
230,910 + EX31_RS01050 0.63 +0.6
230,910 + EX31_RS01050 0.63 -0.3
230,910 + EX31_RS01050 0.63 +0.1
230,911 - EX31_RS01050 0.63 -0.3
230,911 - EX31_RS01050 0.63 -0.5
230,911 - EX31_RS01050 0.63 -1.0
230,911 - EX31_RS01050 0.63 +0.9
230,911 - EX31_RS01050 0.63 +1.0
230,965 - EX31_RS01050 0.68 +0.0
230,967 + EX31_RS01050 0.68 -0.1
230,967 + EX31_RS01050 0.68 +1.1
230,967 + EX31_RS01050 0.68 -3.0
230,968 - EX31_RS01050 0.68 +0.3

Or see this region's nucleotide sequence