Strain Fitness in Rahnella sp. WP5 around EX31_RS24485

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24475 and EX31_RS24480 are separated by 187 nucleotidesEX31_RS24480 and EX31_RS24485 are separated by 8 nucleotidesEX31_RS24485 and EX31_RS24490 are separated by 21 nucleotidesEX31_RS24490 and EX31_RS24495 overlap by 17 nucleotides EX31_RS24475: EX31_RS24475 - PTS glucose transporter subunit IIBC, at 662,630 to 664,063 _RS24475 EX31_RS24480: EX31_RS24480 - purine nucleoside phosphoramidase, at 664,251 to 664,604 _RS24480 EX31_RS24485: EX31_RS24485 - DUF1425 domain-containing protein, at 664,613 to 664,981 _RS24485 EX31_RS24490: EX31_RS24490 - penicillin-binding protein activator LpoB, at 665,003 to 665,605 _RS24490 EX31_RS24495: EX31_RS24495 - phosphotransferase, at 665,589 to 666,446 _RS24495 Position (kb) 664 665Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 663.676 kb on + strand, within EX31_RS24475at 663.708 kb on + strand, within EX31_RS24475at 663.708 kb on + strand, within EX31_RS24475at 663.708 kb on + strand, within EX31_RS24475at 663.708 kb on + strand, within EX31_RS24475at 663.708 kb on + strand, within EX31_RS24475at 663.709 kb on - strand, within EX31_RS24475at 663.719 kb on + strand, within EX31_RS24475at 663.719 kb on + strand, within EX31_RS24475at 663.719 kb on + strand, within EX31_RS24475at 663.719 kb on + strand, within EX31_RS24475at 663.720 kb on - strand, within EX31_RS24475at 663.720 kb on - strand, within EX31_RS24475at 663.731 kb on + strand, within EX31_RS24475at 663.731 kb on + strand, within EX31_RS24475at 663.734 kb on + strand, within EX31_RS24475at 663.892 kb on + strand, within EX31_RS24475at 663.892 kb on + strand, within EX31_RS24475at 663.892 kb on + strand, within EX31_RS24475at 663.892 kb on + strand, within EX31_RS24475at 664.046 kb on + strandat 664.046 kb on + strandat 664.046 kb on + strandat 664.046 kb on + strandat 664.046 kb on + strandat 664.046 kb on + strandat 664.046 kb on + strandat 664.046 kb on + strandat 664.047 kb on - strandat 664.061 kb on + strandat 664.062 kb on - strandat 664.160 kb on + strandat 664.161 kb on - strandat 664.161 kb on - strandat 664.177 kb on - strandat 664.211 kb on - strandat 664.211 kb on - strandat 664.217 kb on + strandat 664.218 kb on - strandat 664.229 kb on + strandat 664.247 kb on + strandat 664.247 kb on + strandat 664.247 kb on + strandat 664.247 kb on + strandat 664.247 kb on + strandat 664.247 kb on + strandat 664.247 kb on + strandat 664.248 kb on - strandat 664.248 kb on - strandat 664.248 kb on - strandat 664.248 kb on - strandat 664.248 kb on - strandat 664.311 kb on + strand, within EX31_RS24480at 664.367 kb on + strand, within EX31_RS24480at 664.368 kb on - strand, within EX31_RS24480at 664.542 kb on + strand, within EX31_RS24480at 664.553 kb on + strand, within EX31_RS24480at 664.553 kb on + strand, within EX31_RS24480at 664.554 kb on - strand, within EX31_RS24480at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.654 kb on - strand, within EX31_RS24485at 664.661 kb on - strand, within EX31_RS24485at 664.755 kb on + strand, within EX31_RS24485at 664.838 kb on + strand, within EX31_RS24485at 664.838 kb on + strand, within EX31_RS24485at 664.838 kb on + strand, within EX31_RS24485at 664.838 kb on + strand, within EX31_RS24485at 664.839 kb on - strand, within EX31_RS24485at 664.844 kb on + strand, within EX31_RS24485at 664.845 kb on - strand, within EX31_RS24485at 664.849 kb on + strand, within EX31_RS24485at 664.850 kb on - strand, within EX31_RS24485at 664.850 kb on - strand, within EX31_RS24485at 664.866 kb on + strand, within EX31_RS24485at 664.894 kb on + strand, within EX31_RS24485at 664.894 kb on + strand, within EX31_RS24485at 664.894 kb on + strand, within EX31_RS24485at 664.894 kb on + strand, within EX31_RS24485at 664.895 kb on - strand, within EX31_RS24485at 664.895 kb on - strand, within EX31_RS24485at 664.952 kb on + strandat 664.952 kb on + strandat 664.953 kb on - strandat 664.963 kb on + strandat 664.963 kb on + strandat 664.964 kb on - strandat 664.964 kb on - strandat 664.964 kb on - strandat 664.964 kb on - strandat 664.967 kb on + strandat 664.967 kb on + strandat 664.967 kb on + strandat 664.973 kb on + strandat 664.974 kb on - strandat 665.056 kb on + strandat 665.056 kb on + strandat 665.056 kb on + strandat 665.056 kb on + strandat 665.057 kb on - strandat 665.057 kb on - strandat 665.057 kb on - strandat 665.478 kb on + strand, within EX31_RS24490at 665.478 kb on + strand, within EX31_RS24490at 665.479 kb on - strand, within EX31_RS24490at 665.479 kb on - strand, within EX31_RS24490at 665.489 kb on + strand, within EX31_RS24490at 665.504 kb on - strand, within EX31_RS24490at 665.686 kb on + strand, within EX31_RS24495at 665.764 kb on + strand, within EX31_RS24495at 665.764 kb on + strand, within EX31_RS24495at 665.819 kb on + strand, within EX31_RS24495at 665.887 kb on + strand, within EX31_RS24495at 665.915 kb on - strand, within EX31_RS24495at 665.915 kb on - strand, within EX31_RS24495at 665.965 kb on + strand, within EX31_RS24495at 665.965 kb on + strand, within EX31_RS24495at 665.980 kb on + strand, within EX31_RS24495

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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663,676 + EX31_RS24475 0.73 -0.3
663,708 + EX31_RS24475 0.75 -0.6
663,708 + EX31_RS24475 0.75 -1.3
663,708 + EX31_RS24475 0.75 +0.4
663,708 + EX31_RS24475 0.75 -0.0
663,708 + EX31_RS24475 0.75 +0.0
663,709 - EX31_RS24475 0.75 -0.6
663,719 + EX31_RS24475 0.76 +0.6
663,719 + EX31_RS24475 0.76 +0.4
663,719 + EX31_RS24475 0.76 +0.9
663,719 + EX31_RS24475 0.76 -0.2
663,720 - EX31_RS24475 0.76 +0.9
663,720 - EX31_RS24475 0.76 +1.1
663,731 + EX31_RS24475 0.77 -2.1
663,731 + EX31_RS24475 0.77 +1.1
663,734 + EX31_RS24475 0.77 -1.1
663,892 + EX31_RS24475 0.88 +0.0
663,892 + EX31_RS24475 0.88 +0.4
663,892 + EX31_RS24475 0.88 -0.8
663,892 + EX31_RS24475 0.88 +0.8
664,046 + -0.8
664,046 + -0.4
664,046 + -0.0
664,046 + +0.2
664,046 + -0.2
664,046 + +0.4
664,046 + -0.5
664,046 + +0.3
664,047 - +0.3
664,061 + +0.4
664,062 - +0.5
664,160 + +1.1
664,161 - -0.9
664,161 - +1.0
664,177 - +0.5
664,211 - +2.0
664,211 - -0.3
664,217 + -0.3
664,218 - -0.0
664,229 + -0.3
664,247 + -1.0
664,247 + -3.0
664,247 + +0.2
664,247 + -0.2
664,247 + -0.4
664,247 + -0.3
664,247 + -0.1
664,248 - -0.2
664,248 - +1.0
664,248 - +0.6
664,248 - +0.7
664,248 - +0.8
664,311 + EX31_RS24480 0.17 +1.9
664,367 + EX31_RS24480 0.33 +0.9
664,368 - EX31_RS24480 0.33 -0.6
664,542 + EX31_RS24480 0.82 -0.5
664,553 + EX31_RS24480 0.85 +0.1
664,553 + EX31_RS24480 0.85 +0.8
664,554 - EX31_RS24480 0.86 -0.2
664,653 + EX31_RS24485 0.11 -0.1
664,653 + EX31_RS24485 0.11 -0.2
664,653 + EX31_RS24485 0.11 -1.0
664,653 + EX31_RS24485 0.11 -0.0
664,653 + EX31_RS24485 0.11 +0.4
664,653 + EX31_RS24485 0.11 -1.0
664,653 + EX31_RS24485 0.11 -0.1
664,653 + EX31_RS24485 0.11 -0.2
664,654 - EX31_RS24485 0.11 -1.2
664,661 - EX31_RS24485 0.13 -1.2
664,755 + EX31_RS24485 0.38 +0.1
664,838 + EX31_RS24485 0.61 -0.8
664,838 + EX31_RS24485 0.61 -2.9
664,838 + EX31_RS24485 0.61 -1.1
664,838 + EX31_RS24485 0.61 +0.2
664,839 - EX31_RS24485 0.61 +1.2
664,844 + EX31_RS24485 0.63 -1.7
664,845 - EX31_RS24485 0.63 -1.4
664,849 + EX31_RS24485 0.64 -0.3
664,850 - EX31_RS24485 0.64 +0.3
664,850 - EX31_RS24485 0.64 -1.3
664,866 + EX31_RS24485 0.69 -0.7
664,894 + EX31_RS24485 0.76 -0.3
664,894 + EX31_RS24485 0.76 -0.5
664,894 + EX31_RS24485 0.76 -1.0
664,894 + EX31_RS24485 0.76 +0.4
664,895 - EX31_RS24485 0.76 -0.9
664,895 - EX31_RS24485 0.76 +1.1
664,952 + +0.0
664,952 + -1.5
664,953 - -1.3
664,963 + +0.3
664,963 + -0.4
664,964 - -0.1
664,964 - -1.0
664,964 - -1.3
664,964 - +1.2
664,967 + +0.7
664,967 + -0.4
664,967 + -0.8
664,973 + -2.5
664,974 - +0.1
665,056 + -0.3
665,056 + -0.4
665,056 + +0.2
665,056 + +0.4
665,057 - +0.6
665,057 - -0.1
665,057 - -0.1
665,478 + EX31_RS24490 0.79 -0.1
665,478 + EX31_RS24490 0.79 +2.2
665,479 - EX31_RS24490 0.79 -0.5
665,479 - EX31_RS24490 0.79 +0.1
665,489 + EX31_RS24490 0.81 -1.0
665,504 - EX31_RS24490 0.83 +0.9
665,686 + EX31_RS24495 0.11 -0.3
665,764 + EX31_RS24495 0.20 -0.7
665,764 + EX31_RS24495 0.20 +1.5
665,819 + EX31_RS24495 0.27 -0.2
665,887 + EX31_RS24495 0.35 -0.3
665,915 - EX31_RS24495 0.38 -0.4
665,915 - EX31_RS24495 0.38 -1.2
665,965 + EX31_RS24495 0.44 +0.5
665,965 + EX31_RS24495 0.44 -0.3
665,980 + EX31_RS24495 0.46 +0.3

Or see this region's nucleotide sequence