Strain Fitness in Rahnella sp. WP5 around EX31_RS23160

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23150 and EX31_RS23155 are separated by 267 nucleotidesEX31_RS23155 and EX31_RS23160 are separated by 59 nucleotidesEX31_RS23160 and EX31_RS23165 overlap by 4 nucleotidesEX31_RS23165 and EX31_RS23170 are separated by 2 nucleotides EX31_RS23150: EX31_RS23150 - leucine--tRNA ligase, at 390,919 to 393,501 _RS23150 EX31_RS23155: EX31_RS23155 - zinc ribbon-containing protein, at 393,769 to 394,269 _RS23155 EX31_RS23160: EX31_RS23160 - amino acid ABC transporter ATP-binding protein, at 394,329 to 395,054 _RS23160 EX31_RS23165: EX31_RS23165 - glutamate/aspartate ABC transporter permease GltK, at 395,051 to 395,728 _RS23165 EX31_RS23170: EX31_RS23170 - amino acid ABC transporter permease, at 395,731 to 396,471 _RS23170 Position (kb) 394 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 393.579 kb on - strandat 393.649 kb on + strandat 393.649 kb on + strandat 393.649 kb on + strandat 393.650 kb on - strandat 393.656 kb on - strandat 393.677 kb on + strandat 393.703 kb on - strandat 393.703 kb on - strandat 393.703 kb on - strandat 393.703 kb on - strandat 393.708 kb on + strandat 393.709 kb on - strandat 393.713 kb on + strandat 393.745 kb on + strandat 393.768 kb on + strandat 393.768 kb on + strandat 393.768 kb on + strandat 393.777 kb on + strandat 393.777 kb on + strandat 393.777 kb on + strandat 393.777 kb on + strandat 393.777 kb on + strandat 393.780 kb on + strandat 393.780 kb on + strandat 393.920 kb on + strand, within EX31_RS23155at 393.920 kb on + strand, within EX31_RS23155at 393.960 kb on + strand, within EX31_RS23155at 393.961 kb on - strand, within EX31_RS23155at 393.964 kb on + strand, within EX31_RS23155at 393.964 kb on + strand, within EX31_RS23155at 393.964 kb on + strand, within EX31_RS23155at 393.965 kb on - strand, within EX31_RS23155at 393.965 kb on - strand, within EX31_RS23155at 394.032 kb on + strand, within EX31_RS23155at 394.062 kb on + strand, within EX31_RS23155at 394.126 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.196 kb on - strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.215 kb on + strand, within EX31_RS23155at 394.379 kb on + strandat 394.398 kb on - strandat 394.411 kb on - strand, within EX31_RS23160at 394.496 kb on + strand, within EX31_RS23160at 394.497 kb on - strand, within EX31_RS23160at 394.520 kb on + strand, within EX31_RS23160at 394.521 kb on - strand, within EX31_RS23160at 394.599 kb on - strand, within EX31_RS23160at 394.599 kb on - strand, within EX31_RS23160at 394.983 kb on - strandat 395.024 kb on - strandat 395.107 kb on + strandat 395.108 kb on - strandat 395.115 kb on + strandat 395.115 kb on + strandat 395.116 kb on - strandat 395.116 kb on - strandat 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.211 kb on + strand, within EX31_RS23165at 395.211 kb on + strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.235 kb on - strand, within EX31_RS23165at 395.369 kb on - strand, within EX31_RS23165at 395.395 kb on - strand, within EX31_RS23165at 395.397 kb on + strand, within EX31_RS23165at 395.397 kb on + strand, within EX31_RS23165at 395.503 kb on - strand, within EX31_RS23165at 395.553 kb on + strand, within EX31_RS23165at 395.553 kb on + strand, within EX31_RS23165at 395.553 kb on + strand, within EX31_RS23165at 395.553 kb on + strand, within EX31_RS23165at 395.554 kb on - strand, within EX31_RS23165at 395.554 kb on - strand, within EX31_RS23165at 395.651 kb on - strand, within EX31_RS23165at 395.651 kb on - strand, within EX31_RS23165at 395.651 kb on - strand, within EX31_RS23165at 395.663 kb on - strandat 395.685 kb on + strandat 395.685 kb on + strandat 395.704 kb on + strandat 395.704 kb on + strandat 395.704 kb on + strandat 395.704 kb on + strandat 395.704 kb on + strandat 395.704 kb on + strandat 395.705 kb on - strandat 395.705 kb on - strandat 395.705 kb on - strandat 395.705 kb on - strandat 395.705 kb on - strandat 395.732 kb on + strandat 395.732 kb on + strandat 395.732 kb on + strandat 395.732 kb on + strandat 395.732 kb on + strandat 395.733 kb on - strandat 395.733 kb on - strandat 395.733 kb on - strandat 395.766 kb on + strandat 395.766 kb on + strandat 395.766 kb on + strandat 395.766 kb on + strandat 395.767 kb on - strandat 395.767 kb on - strandat 395.773 kb on + strandat 395.774 kb on - strandat 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.874 kb on + strand, within EX31_RS23170at 395.978 kb on + strand, within EX31_RS23170at 395.999 kb on + strand, within EX31_RS23170at 396.000 kb on - strand, within EX31_RS23170at 396.006 kb on - strand, within EX31_RS23170at 396.022 kb on - strand, within EX31_RS23170at 396.022 kb on - strand, within EX31_RS23170

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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393,579 - -0.7
393,649 + +0.2
393,649 + +0.2
393,649 + -0.4
393,650 - -0.5
393,656 - -0.1
393,677 + -0.5
393,703 - -1.0
393,703 - +0.0
393,703 - -0.9
393,703 - +2.1
393,708 + -1.1
393,709 - +0.0
393,713 + -0.4
393,745 + -0.8
393,768 + +0.1
393,768 + +0.2
393,768 + -0.8
393,777 + -0.6
393,777 + -0.3
393,777 + +0.1
393,777 + -0.1
393,777 + -0.0
393,780 + -2.4
393,780 + -0.6
393,920 + EX31_RS23155 0.30 +0.1
393,920 + EX31_RS23155 0.30 +0.2
393,960 + EX31_RS23155 0.38 -1.2
393,961 - EX31_RS23155 0.38 -0.0
393,964 + EX31_RS23155 0.39 -0.1
393,964 + EX31_RS23155 0.39 -0.1
393,964 + EX31_RS23155 0.39 -0.1
393,965 - EX31_RS23155 0.39 -1.5
393,965 - EX31_RS23155 0.39 +0.7
394,032 + EX31_RS23155 0.52 -0.2
394,062 + EX31_RS23155 0.58 -0.4
394,126 + EX31_RS23155 0.71 +0.4
394,195 + EX31_RS23155 0.85 +1.0
394,195 + EX31_RS23155 0.85 -1.4
394,195 + EX31_RS23155 0.85 +1.2
394,195 + EX31_RS23155 0.85 +1.1
394,195 + EX31_RS23155 0.85 -0.3
394,195 + EX31_RS23155 0.85 -3.0
394,195 + EX31_RS23155 0.85 +0.1
394,196 - EX31_RS23155 0.85 +0.3
394,197 + EX31_RS23155 0.85 -0.3
394,197 + EX31_RS23155 0.85 -1.4
394,197 + EX31_RS23155 0.85 +0.4
394,197 + EX31_RS23155 0.85 +0.4
394,215 + EX31_RS23155 0.89 +0.8
394,379 + -0.0
394,398 - -0.3
394,411 - EX31_RS23160 0.11 -0.8
394,496 + EX31_RS23160 0.23 -1.4
394,497 - EX31_RS23160 0.23 -0.2
394,520 + EX31_RS23160 0.26 -2.0
394,521 - EX31_RS23160 0.26 +0.0
394,599 - EX31_RS23160 0.37 -0.5
394,599 - EX31_RS23160 0.37 +0.1
394,983 - -2.3
395,024 - +0.2
395,107 + -0.7
395,108 - +0.6
395,115 + +0.4
395,115 + +0.1
395,116 - -0.1
395,116 - +1.2
395,119 + EX31_RS23165 0.10 +1.7
395,119 + EX31_RS23165 0.10 +0.9
395,119 + EX31_RS23165 0.10 +1.4
395,119 + EX31_RS23165 0.10 -0.1
395,119 + EX31_RS23165 0.10 -0.6
395,119 + EX31_RS23165 0.10 -0.8
395,119 + EX31_RS23165 0.10 -0.1
395,119 + EX31_RS23165 0.10 +0.4
395,119 + EX31_RS23165 0.10 +0.6
395,120 - EX31_RS23165 0.10 +0.6
395,120 - EX31_RS23165 0.10 +0.1
395,120 - EX31_RS23165 0.10 -0.4
395,120 - EX31_RS23165 0.10 -0.5
395,173 + EX31_RS23165 0.18 +0.1
395,173 + EX31_RS23165 0.18 -0.9
395,173 + EX31_RS23165 0.18 +0.7
395,173 + EX31_RS23165 0.18 -0.0
395,173 + EX31_RS23165 0.18 +0.3
395,174 - EX31_RS23165 0.18 +0.7
395,174 - EX31_RS23165 0.18 +0.3
395,174 - EX31_RS23165 0.18 -0.7
395,174 - EX31_RS23165 0.18 -1.5
395,174 - EX31_RS23165 0.18 +0.2
395,174 - EX31_RS23165 0.18 -0.1
395,211 + EX31_RS23165 0.24 +0.0
395,211 + EX31_RS23165 0.24 +1.0
395,212 - EX31_RS23165 0.24 +0.3
395,212 - EX31_RS23165 0.24 +0.5
395,212 - EX31_RS23165 0.24 +0.0
395,212 - EX31_RS23165 0.24 -1.8
395,235 - EX31_RS23165 0.27 -0.4
395,369 - EX31_RS23165 0.47 +0.3
395,395 - EX31_RS23165 0.51 +0.8
395,397 + EX31_RS23165 0.51 -0.4
395,397 + EX31_RS23165 0.51 -0.2
395,503 - EX31_RS23165 0.67 +0.4
395,553 + EX31_RS23165 0.74 +1.7
395,553 + EX31_RS23165 0.74 -1.0
395,553 + EX31_RS23165 0.74 -0.7
395,553 + EX31_RS23165 0.74 +0.4
395,554 - EX31_RS23165 0.74 +0.2
395,554 - EX31_RS23165 0.74 -0.3
395,651 - EX31_RS23165 0.88 +0.5
395,651 - EX31_RS23165 0.88 -0.7
395,651 - EX31_RS23165 0.88 -0.4
395,663 - +0.7
395,685 + +0.4
395,685 + +0.6
395,704 + +0.6
395,704 + +1.2
395,704 + -0.9
395,704 + +1.2
395,704 + +0.2
395,704 + -1.7
395,705 - +1.2
395,705 - -0.3
395,705 - -1.0
395,705 - +0.6
395,705 - -0.9
395,732 + +0.3
395,732 + +0.6
395,732 + +0.8
395,732 + +0.4
395,732 + +0.9
395,733 - +0.2
395,733 - -0.6
395,733 - +0.2
395,766 + +0.1
395,766 + -0.3
395,766 + +1.3
395,766 + -0.5
395,767 - -1.0
395,767 - -0.2
395,773 + -0.3
395,774 - -0.2
395,816 + EX31_RS23170 0.11 -1.1
395,816 + EX31_RS23170 0.11 -1.8
395,816 + EX31_RS23170 0.11 +0.3
395,816 + EX31_RS23170 0.11 +0.3
395,816 + EX31_RS23170 0.11 -2.0
395,816 + EX31_RS23170 0.11 -0.2
395,816 + EX31_RS23170 0.11 +0.2
395,816 + EX31_RS23170 0.11 +0.2
395,816 + EX31_RS23170 0.11 -0.2
395,816 + EX31_RS23170 0.11 +0.4
395,816 + EX31_RS23170 0.11 +0.3
395,816 + EX31_RS23170 0.11 +0.1
395,816 + EX31_RS23170 0.11 -0.2
395,816 + EX31_RS23170 0.11 -1.9
395,816 + EX31_RS23170 0.11 -0.6
395,816 + EX31_RS23170 0.11 -0.8
395,817 - EX31_RS23170 0.12 +0.9
395,817 - EX31_RS23170 0.12 -0.2
395,817 - EX31_RS23170 0.12 +0.5
395,817 - EX31_RS23170 0.12 +0.1
395,817 - EX31_RS23170 0.12 -0.6
395,817 - EX31_RS23170 0.12 +0.3
395,817 - EX31_RS23170 0.12 -0.7
395,817 - EX31_RS23170 0.12 +0.8
395,874 + EX31_RS23170 0.19 +0.5
395,978 + EX31_RS23170 0.33 -0.5
395,999 + EX31_RS23170 0.36 +0.4
396,000 - EX31_RS23170 0.36 -0.4
396,006 - EX31_RS23170 0.37 -1.7
396,022 - EX31_RS23170 0.39 +2.3
396,022 - EX31_RS23170 0.39 -0.4

Or see this region's nucleotide sequence