Strain Fitness in Rahnella sp. WP5 around EX31_RS22300

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22295 and EX31_RS22300 are separated by 120 nucleotidesEX31_RS22300 and EX31_RS22305 are separated by 136 nucleotides EX31_RS22295: EX31_RS22295 - PLP-dependent cysteine synthase family protein, at 211,035 to 212,078 _RS22295 EX31_RS22300: EX31_RS22300 - Lrp/AsnC family transcriptional regulator, at 212,199 to 212,654 _RS22300 EX31_RS22305: EX31_RS22305 - SmdA family multidrug ABC transporter permease/ATP-binding protein, at 212,791 to 214,563 _RS22305 Position (kb) 212 213Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 211.214 kb on + strand, within EX31_RS22295at 211.214 kb on + strand, within EX31_RS22295at 211.214 kb on + strand, within EX31_RS22295at 211.215 kb on - strand, within EX31_RS22295at 211.296 kb on + strand, within EX31_RS22295at 211.297 kb on - strand, within EX31_RS22295at 211.297 kb on - strand, within EX31_RS22295at 211.414 kb on + strand, within EX31_RS22295at 211.414 kb on + strand, within EX31_RS22295at 211.420 kb on + strand, within EX31_RS22295at 211.425 kb on + strand, within EX31_RS22295at 211.483 kb on + strand, within EX31_RS22295at 211.577 kb on + strand, within EX31_RS22295at 211.577 kb on + strand, within EX31_RS22295at 211.577 kb on + strand, within EX31_RS22295at 211.578 kb on - strand, within EX31_RS22295at 211.627 kb on + strand, within EX31_RS22295at 211.628 kb on - strand, within EX31_RS22295at 211.643 kb on + strand, within EX31_RS22295at 211.643 kb on + strand, within EX31_RS22295at 211.643 kb on + strand, within EX31_RS22295at 211.643 kb on + strand, within EX31_RS22295at 211.643 kb on + strand, within EX31_RS22295at 211.643 kb on + strand, within EX31_RS22295at 211.643 kb on + strand, within EX31_RS22295at 211.643 kb on + strand, within EX31_RS22295at 211.644 kb on - strand, within EX31_RS22295at 211.644 kb on - strand, within EX31_RS22295at 211.644 kb on - strand, within EX31_RS22295at 211.644 kb on - strand, within EX31_RS22295at 211.644 kb on - strand, within EX31_RS22295at 211.644 kb on - strand, within EX31_RS22295at 211.645 kb on + strand, within EX31_RS22295at 211.645 kb on + strand, within EX31_RS22295at 211.645 kb on + strand, within EX31_RS22295at 211.645 kb on + strand, within EX31_RS22295at 211.645 kb on + strand, within EX31_RS22295at 211.645 kb on + strand, within EX31_RS22295at 211.645 kb on + strand, within EX31_RS22295at 211.646 kb on - strand, within EX31_RS22295at 211.646 kb on - strand, within EX31_RS22295at 211.646 kb on - strand, within EX31_RS22295at 211.646 kb on - strand, within EX31_RS22295at 211.646 kb on - strand, within EX31_RS22295at 211.646 kb on - strand, within EX31_RS22295at 211.646 kb on - strand, within EX31_RS22295at 211.687 kb on + strand, within EX31_RS22295at 211.687 kb on + strand, within EX31_RS22295at 211.688 kb on - strand, within EX31_RS22295at 211.688 kb on - strand, within EX31_RS22295at 211.729 kb on + strand, within EX31_RS22295at 211.729 kb on + strand, within EX31_RS22295at 211.730 kb on - strand, within EX31_RS22295at 211.730 kb on - strand, within EX31_RS22295at 211.776 kb on + strand, within EX31_RS22295at 211.785 kb on - strand, within EX31_RS22295at 211.813 kb on + strand, within EX31_RS22295at 211.814 kb on - strand, within EX31_RS22295at 211.853 kb on + strand, within EX31_RS22295at 211.862 kb on + strand, within EX31_RS22295at 211.895 kb on - strand, within EX31_RS22295at 211.897 kb on - strand, within EX31_RS22295at 211.963 kb on + strand, within EX31_RS22295at 211.963 kb on + strand, within EX31_RS22295at 211.964 kb on - strand, within EX31_RS22295at 211.964 kb on - strand, within EX31_RS22295at 211.964 kb on - strand, within EX31_RS22295at 212.004 kb on + strandat 212.004 kb on + strandat 212.004 kb on + strandat 212.004 kb on + strandat 212.004 kb on + strandat 212.005 kb on - strandat 212.005 kb on - strandat 212.005 kb on - strandat 212.049 kb on - strandat 212.093 kb on + strandat 212.093 kb on + strandat 212.093 kb on + strandat 212.093 kb on + strandat 212.094 kb on - strandat 212.111 kb on - strandat 212.117 kb on + strandat 212.122 kb on + strandat 212.122 kb on + strandat 212.122 kb on + strandat 212.123 kb on - strandat 212.123 kb on - strandat 212.123 kb on - strandat 212.137 kb on + strandat 212.137 kb on + strandat 212.137 kb on + strandat 212.137 kb on + strandat 212.138 kb on - strandat 212.156 kb on + strandat 212.156 kb on + strandat 212.156 kb on + strandat 212.156 kb on + strandat 212.157 kb on - strandat 212.157 kb on - strandat 212.157 kb on - strandat 212.157 kb on - strandat 212.157 kb on - strandat 212.166 kb on + strandat 212.166 kb on + strandat 212.203 kb on + strandat 212.203 kb on + strandat 212.203 kb on + strandat 212.204 kb on - strandat 212.236 kb on + strandat 212.236 kb on + strandat 212.237 kb on - strandat 212.339 kb on + strand, within EX31_RS22300at 212.340 kb on - strand, within EX31_RS22300at 212.359 kb on + strand, within EX31_RS22300at 212.359 kb on + strand, within EX31_RS22300at 212.360 kb on - strand, within EX31_RS22300at 212.408 kb on + strand, within EX31_RS22300at 212.409 kb on - strand, within EX31_RS22300at 212.409 kb on - strand, within EX31_RS22300at 212.436 kb on + strand, within EX31_RS22300at 212.511 kb on + strand, within EX31_RS22300at 212.511 kb on + strand, within EX31_RS22300at 212.512 kb on - strand, within EX31_RS22300at 212.538 kb on - strand, within EX31_RS22300at 212.547 kb on + strand, within EX31_RS22300at 212.548 kb on - strand, within EX31_RS22300at 212.559 kb on + strand, within EX31_RS22300at 212.559 kb on + strand, within EX31_RS22300at 212.652 kb on + strandat 212.696 kb on - strandat 212.696 kb on - strandat 212.770 kb on + strandat 212.770 kb on + strandat 212.770 kb on + strandat 212.810 kb on + strandat 212.810 kb on + strandat 212.818 kb on + strandat 212.818 kb on + strandat 212.888 kb on + strandat 212.889 kb on - strandat 212.912 kb on + strandat 212.912 kb on + strandat 212.912 kb on + strandat 212.916 kb on + strandat 212.917 kb on - strandat 212.917 kb on - strandat 212.928 kb on + strandat 212.928 kb on + strandat 212.928 kb on + strandat 212.929 kb on - strandat 212.929 kb on - strandat 212.929 kb on - strandat 213.001 kb on + strand, within EX31_RS22305at 213.001 kb on + strand, within EX31_RS22305at 213.002 kb on - strand, within EX31_RS22305at 213.013 kb on + strand, within EX31_RS22305at 213.013 kb on + strand, within EX31_RS22305at 213.013 kb on + strand, within EX31_RS22305at 213.014 kb on - strand, within EX31_RS22305at 213.014 kb on - strand, within EX31_RS22305at 213.014 kb on - strand, within EX31_RS22305at 213.014 kb on - strand, within EX31_RS22305at 213.046 kb on + strand, within EX31_RS22305at 213.046 kb on + strand, within EX31_RS22305at 213.047 kb on - strand, within EX31_RS22305at 213.065 kb on + strand, within EX31_RS22305at 213.112 kb on + strand, within EX31_RS22305at 213.153 kb on + strand, within EX31_RS22305at 213.154 kb on - strand, within EX31_RS22305at 213.233 kb on + strand, within EX31_RS22305at 213.237 kb on + strand, within EX31_RS22305at 213.244 kb on - strand, within EX31_RS22305at 213.313 kb on - strand, within EX31_RS22305at 213.323 kb on - strand, within EX31_RS22305at 213.378 kb on + strand, within EX31_RS22305at 213.414 kb on + strand, within EX31_RS22305at 213.415 kb on - strand, within EX31_RS22305at 213.415 kb on - strand, within EX31_RS22305at 213.492 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.535 kb on + strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.536 kb on - strand, within EX31_RS22305at 213.590 kb on + strand, within EX31_RS22305at 213.591 kb on - strand, within EX31_RS22305at 213.637 kb on + strand, within EX31_RS22305at 213.637 kb on + strand, within EX31_RS22305at 213.637 kb on + strand, within EX31_RS22305at 213.637 kb on + strand, within EX31_RS22305at 213.637 kb on + strand, within EX31_RS22305at 213.637 kb on + strand, within EX31_RS22305at 213.638 kb on - strand, within EX31_RS22305at 213.638 kb on - strand, within EX31_RS22305

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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211,214 + EX31_RS22295 0.17 -0.1
211,214 + EX31_RS22295 0.17 -1.0
211,214 + EX31_RS22295 0.17 -1.2
211,215 - EX31_RS22295 0.17 -0.2
211,296 + EX31_RS22295 0.25 -1.6
211,297 - EX31_RS22295 0.25 -0.7
211,297 - EX31_RS22295 0.25 -0.5
211,414 + EX31_RS22295 0.36 +0.1
211,414 + EX31_RS22295 0.36 +0.4
211,420 + EX31_RS22295 0.37 +0.6
211,425 + EX31_RS22295 0.37 +0.4
211,483 + EX31_RS22295 0.43 -0.4
211,577 + EX31_RS22295 0.52 -1.0
211,577 + EX31_RS22295 0.52 +1.4
211,577 + EX31_RS22295 0.52 -0.5
211,578 - EX31_RS22295 0.52 +0.3
211,627 + EX31_RS22295 0.57 -0.1
211,628 - EX31_RS22295 0.57 -0.4
211,643 + EX31_RS22295 0.58 +0.1
211,643 + EX31_RS22295 0.58 -0.2
211,643 + EX31_RS22295 0.58 +0.3
211,643 + EX31_RS22295 0.58 -1.6
211,643 + EX31_RS22295 0.58 -0.1
211,643 + EX31_RS22295 0.58 +0.2
211,643 + EX31_RS22295 0.58 +0.6
211,643 + EX31_RS22295 0.58 -1.1
211,644 - EX31_RS22295 0.58 -0.1
211,644 - EX31_RS22295 0.58 -0.6
211,644 - EX31_RS22295 0.58 +0.6
211,644 - EX31_RS22295 0.58 +0.6
211,644 - EX31_RS22295 0.58 +0.6
211,644 - EX31_RS22295 0.58 +1.2
211,645 + EX31_RS22295 0.58 -2.7
211,645 + EX31_RS22295 0.58 +0.4
211,645 + EX31_RS22295 0.58 +0.6
211,645 + EX31_RS22295 0.58 -1.0
211,645 + EX31_RS22295 0.58 -0.4
211,645 + EX31_RS22295 0.58 +1.1
211,645 + EX31_RS22295 0.58 +0.7
211,646 - EX31_RS22295 0.59 -0.9
211,646 - EX31_RS22295 0.59 +0.1
211,646 - EX31_RS22295 0.59 +0.1
211,646 - EX31_RS22295 0.59 -0.6
211,646 - EX31_RS22295 0.59 +1.0
211,646 - EX31_RS22295 0.59 -0.2
211,646 - EX31_RS22295 0.59 -0.5
211,687 + EX31_RS22295 0.62 +0.4
211,687 + EX31_RS22295 0.62 -0.1
211,688 - EX31_RS22295 0.63 -0.1
211,688 - EX31_RS22295 0.63 +0.4
211,729 + EX31_RS22295 0.66 -0.5
211,729 + EX31_RS22295 0.66 +0.5
211,730 - EX31_RS22295 0.67 +0.4
211,730 - EX31_RS22295 0.67 -1.2
211,776 + EX31_RS22295 0.71 +1.1
211,785 - EX31_RS22295 0.72 -0.9
211,813 + EX31_RS22295 0.75 +0.4
211,814 - EX31_RS22295 0.75 +0.0
211,853 + EX31_RS22295 0.78 +0.8
211,862 + EX31_RS22295 0.79 +0.1
211,895 - EX31_RS22295 0.82 +1.1
211,897 - EX31_RS22295 0.83 +0.8
211,963 + EX31_RS22295 0.89 -0.2
211,963 + EX31_RS22295 0.89 -1.6
211,964 - EX31_RS22295 0.89 -0.0
211,964 - EX31_RS22295 0.89 +0.3
211,964 - EX31_RS22295 0.89 -0.1
212,004 + +0.1
212,004 + +0.2
212,004 + -0.9
212,004 + -0.0
212,004 + -0.8
212,005 - -2.5
212,005 - -2.2
212,005 - +0.3
212,049 - +1.0
212,093 + +0.1
212,093 + +0.2
212,093 + +0.6
212,093 + +0.4
212,094 - -2.2
212,111 - +0.4
212,117 + +0.3
212,122 + +0.2
212,122 + -1.5
212,122 + +0.3
212,123 - +0.6
212,123 - +0.3
212,123 - -0.1
212,137 + +0.4
212,137 + +0.2
212,137 + -0.4
212,137 + +0.2
212,138 - +0.7
212,156 + +0.9
212,156 + +0.0
212,156 + +0.3
212,156 + +0.1
212,157 - +0.9
212,157 - +0.0
212,157 - -0.5
212,157 - +0.2
212,157 - +0.3
212,166 + +0.4
212,166 + -0.1
212,203 + +0.6
212,203 + -0.6
212,203 + -0.4
212,204 - -0.5
212,236 + -0.1
212,236 + +0.8
212,237 - -0.4
212,339 + EX31_RS22300 0.31 -4.2
212,340 - EX31_RS22300 0.31 -0.1
212,359 + EX31_RS22300 0.35 +0.2
212,359 + EX31_RS22300 0.35 +0.1
212,360 - EX31_RS22300 0.35 -0.6
212,408 + EX31_RS22300 0.46 -0.4
212,409 - EX31_RS22300 0.46 -0.7
212,409 - EX31_RS22300 0.46 -0.6
212,436 + EX31_RS22300 0.52 -0.6
212,511 + EX31_RS22300 0.68 -0.3
212,511 + EX31_RS22300 0.68 -0.4
212,512 - EX31_RS22300 0.69 +0.2
212,538 - EX31_RS22300 0.74 +0.3
212,547 + EX31_RS22300 0.76 -0.3
212,548 - EX31_RS22300 0.77 -1.2
212,559 + EX31_RS22300 0.79 -2.4
212,559 + EX31_RS22300 0.79 +0.4
212,652 + -0.3
212,696 - +0.3
212,696 - -0.2
212,770 + -0.1
212,770 + +0.8
212,770 + -0.5
212,810 + -0.5
212,810 + +0.6
212,818 + -0.2
212,818 + -0.2
212,888 + -1.0
212,889 - -1.3
212,912 + +0.5
212,912 + -1.2
212,912 + -0.0
212,916 + -1.9
212,917 - -1.7
212,917 - +0.5
212,928 + +0.9
212,928 + -0.1
212,928 + -0.6
212,929 - -0.1
212,929 - +0.3
212,929 - -1.8
213,001 + EX31_RS22305 0.12 -0.2
213,001 + EX31_RS22305 0.12 -0.1
213,002 - EX31_RS22305 0.12 +0.3
213,013 + EX31_RS22305 0.13 -0.3
213,013 + EX31_RS22305 0.13 +0.8
213,013 + EX31_RS22305 0.13 +0.5
213,014 - EX31_RS22305 0.13 -0.4
213,014 - EX31_RS22305 0.13 +0.9
213,014 - EX31_RS22305 0.13 +0.3
213,014 - EX31_RS22305 0.13 +1.7
213,046 + EX31_RS22305 0.14 -0.3
213,046 + EX31_RS22305 0.14 -0.4
213,047 - EX31_RS22305 0.14 -0.1
213,065 + EX31_RS22305 0.15 -0.5
213,112 + EX31_RS22305 0.18 -0.9
213,153 + EX31_RS22305 0.20 +0.4
213,154 - EX31_RS22305 0.20 -1.5
213,233 + EX31_RS22305 0.25 +0.0
213,237 + EX31_RS22305 0.25 -0.6
213,244 - EX31_RS22305 0.26 -1.1
213,313 - EX31_RS22305 0.29 -0.4
213,323 - EX31_RS22305 0.30 -0.2
213,378 + EX31_RS22305 0.33 +0.4
213,414 + EX31_RS22305 0.35 +0.4
213,415 - EX31_RS22305 0.35 -1.2
213,415 - EX31_RS22305 0.35 -1.9
213,492 + EX31_RS22305 0.40 +0.3
213,535 + EX31_RS22305 0.42 +1.1
213,535 + EX31_RS22305 0.42 -0.5
213,535 + EX31_RS22305 0.42 +0.3
213,535 + EX31_RS22305 0.42 +1.2
213,535 + EX31_RS22305 0.42 -0.1
213,535 + EX31_RS22305 0.42 -0.0
213,535 + EX31_RS22305 0.42 +0.5
213,535 + EX31_RS22305 0.42 -0.2
213,535 + EX31_RS22305 0.42 -1.3
213,535 + EX31_RS22305 0.42 -0.4
213,535 + EX31_RS22305 0.42 -0.3
213,535 + EX31_RS22305 0.42 +0.5
213,535 + EX31_RS22305 0.42 -0.6
213,535 + EX31_RS22305 0.42 +0.6
213,535 + EX31_RS22305 0.42 -0.6
213,535 + EX31_RS22305 0.42 +0.6
213,535 + EX31_RS22305 0.42 -2.6
213,535 + EX31_RS22305 0.42 +0.4
213,535 + EX31_RS22305 0.42 -0.8
213,535 + EX31_RS22305 0.42 +0.6
213,535 + EX31_RS22305 0.42 +0.2
213,535 + EX31_RS22305 0.42 +0.2
213,535 + EX31_RS22305 0.42 -1.8
213,535 + EX31_RS22305 0.42 -0.1
213,535 + EX31_RS22305 0.42 -0.5
213,535 + EX31_RS22305 0.42 +0.1
213,535 + EX31_RS22305 0.42 -1.6
213,535 + EX31_RS22305 0.42 -0.4
213,535 + EX31_RS22305 0.42 +0.6
213,535 + EX31_RS22305 0.42 +0.3
213,535 + EX31_RS22305 0.42 +1.1
213,536 - EX31_RS22305 0.42 +0.5
213,536 - EX31_RS22305 0.42 +0.4
213,536 - EX31_RS22305 0.42 -1.8
213,536 - EX31_RS22305 0.42 -0.4
213,536 - EX31_RS22305 0.42 +0.2
213,536 - EX31_RS22305 0.42 -0.2
213,536 - EX31_RS22305 0.42 -0.1
213,536 - EX31_RS22305 0.42 +0.1
213,536 - EX31_RS22305 0.42 +1.1
213,536 - EX31_RS22305 0.42 +0.5
213,536 - EX31_RS22305 0.42 +0.9
213,536 - EX31_RS22305 0.42 -1.7
213,536 - EX31_RS22305 0.42 -1.1
213,536 - EX31_RS22305 0.42 -0.1
213,536 - EX31_RS22305 0.42 -0.8
213,536 - EX31_RS22305 0.42 -0.7
213,536 - EX31_RS22305 0.42 -0.6
213,536 - EX31_RS22305 0.42 +0.2
213,590 + EX31_RS22305 0.45 +0.5
213,591 - EX31_RS22305 0.45 +1.0
213,637 + EX31_RS22305 0.48 +0.6
213,637 + EX31_RS22305 0.48 +0.2
213,637 + EX31_RS22305 0.48 -1.8
213,637 + EX31_RS22305 0.48 +0.5
213,637 + EX31_RS22305 0.48 +0.1
213,637 + EX31_RS22305 0.48 +0.7
213,638 - EX31_RS22305 0.48 +0.4
213,638 - EX31_RS22305 0.48 -0.4

Or see this region's nucleotide sequence