Strain Fitness in Rahnella sp. WP5 around EX31_RS21950

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21945 and EX31_RS21950 are separated by 394 nucleotidesEX31_RS21950 and EX31_RS21955 are separated by 260 nucleotides EX31_RS21945: EX31_RS21945 - DUF808 domain-containing protein, at 133,433 to 134,353 _RS21945 EX31_RS21950: EX31_RS21950 - DUF1471 domain-containing protein, at 134,748 to 135,023 _RS21950 EX31_RS21955: EX31_RS21955 - methyltransferase, at 135,284 to 135,862 _RS21955 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.752 kb on + strand, within EX31_RS21945at 133.752 kb on + strand, within EX31_RS21945at 133.850 kb on - strand, within EX31_RS21945at 133.887 kb on - strand, within EX31_RS21945at 133.910 kb on - strand, within EX31_RS21945at 133.940 kb on - strand, within EX31_RS21945at 133.940 kb on - strand, within EX31_RS21945at 133.940 kb on - strand, within EX31_RS21945at 133.958 kb on - strand, within EX31_RS21945at 134.055 kb on + strand, within EX31_RS21945at 134.055 kb on + strand, within EX31_RS21945at 134.056 kb on - strand, within EX31_RS21945at 134.064 kb on + strand, within EX31_RS21945at 134.064 kb on + strand, within EX31_RS21945at 134.064 kb on + strand, within EX31_RS21945at 134.064 kb on + strand, within EX31_RS21945at 134.107 kb on + strand, within EX31_RS21945at 134.124 kb on - strand, within EX31_RS21945at 134.124 kb on - strand, within EX31_RS21945at 134.124 kb on - strand, within EX31_RS21945at 134.318 kb on - strandat 134.318 kb on - strandat 134.353 kb on + strandat 134.354 kb on - strandat 134.357 kb on + strandat 134.357 kb on + strandat 134.358 kb on - strandat 134.358 kb on - strandat 134.374 kb on - strandat 134.374 kb on - strandat 134.374 kb on - strandat 134.374 kb on - strandat 134.374 kb on - strandat 134.468 kb on - strandat 134.468 kb on - strandat 134.524 kb on - strandat 134.562 kb on + strandat 134.656 kb on + strandat 134.682 kb on + strandat 134.686 kb on + strandat 134.744 kb on + strandat 134.768 kb on + strandat 134.780 kb on + strand, within EX31_RS21950at 134.820 kb on - strand, within EX31_RS21950at 134.846 kb on + strand, within EX31_RS21950at 134.846 kb on + strand, within EX31_RS21950at 134.847 kb on - strand, within EX31_RS21950at 134.850 kb on + strand, within EX31_RS21950at 134.851 kb on - strand, within EX31_RS21950at 134.851 kb on - strand, within EX31_RS21950at 134.936 kb on + strand, within EX31_RS21950at 134.953 kb on - strand, within EX31_RS21950at 135.017 kb on + strandat 135.017 kb on + strandat 135.084 kb on + strandat 135.084 kb on + strandat 135.085 kb on - strandat 135.087 kb on - strandat 135.087 kb on - strandat 135.138 kb on + strandat 135.159 kb on + strandat 135.181 kb on - strandat 135.252 kb on - strandat 135.252 kb on - strandat 135.253 kb on + strandat 135.253 kb on + strandat 135.254 kb on - strandat 135.261 kb on + strandat 135.261 kb on + strandat 135.262 kb on - strandat 135.262 kb on - strandat 135.262 kb on - strandat 135.262 kb on - strandat 135.289 kb on - strandat 135.364 kb on + strand, within EX31_RS21955at 135.364 kb on + strand, within EX31_RS21955at 135.547 kb on - strand, within EX31_RS21955at 135.565 kb on + strand, within EX31_RS21955at 135.565 kb on + strand, within EX31_RS21955at 135.565 kb on + strand, within EX31_RS21955at 135.565 kb on + strand, within EX31_RS21955at 135.566 kb on - strand, within EX31_RS21955at 135.635 kb on + strand, within EX31_RS21955at 135.636 kb on - strand, within EX31_RS21955at 135.636 kb on - strand, within EX31_RS21955at 135.755 kb on + strand, within EX31_RS21955at 135.788 kb on + strand, within EX31_RS21955at 135.788 kb on + strand, within EX31_RS21955at 135.789 kb on - strand, within EX31_RS21955at 135.789 kb on - strand, within EX31_RS21955at 135.842 kb on + strandat 135.843 kb on - strandat 135.843 kb on - strandat 135.843 kb on - strandat 135.843 kb on - strandat 135.845 kb on - strandat 135.845 kb on - strandat 135.881 kb on - strandat 135.896 kb on + strandat 136.015 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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133,752 + EX31_RS21945 0.35 +1.1
133,752 + EX31_RS21945 0.35 -0.4
133,850 - EX31_RS21945 0.45 -0.3
133,887 - EX31_RS21945 0.49 -0.1
133,910 - EX31_RS21945 0.52 +0.3
133,940 - EX31_RS21945 0.55 -0.2
133,940 - EX31_RS21945 0.55 -0.1
133,940 - EX31_RS21945 0.55 +0.2
133,958 - EX31_RS21945 0.57 +1.1
134,055 + EX31_RS21945 0.68 +0.5
134,055 + EX31_RS21945 0.68 -3.4
134,056 - EX31_RS21945 0.68 +0.6
134,064 + EX31_RS21945 0.69 -2.5
134,064 + EX31_RS21945 0.69 -0.1
134,064 + EX31_RS21945 0.69 -0.6
134,064 + EX31_RS21945 0.69 +0.2
134,107 + EX31_RS21945 0.73 +0.6
134,124 - EX31_RS21945 0.75 +1.2
134,124 - EX31_RS21945 0.75 +0.2
134,124 - EX31_RS21945 0.75 -0.1
134,318 - +0.6
134,318 - +0.9
134,353 + -1.0
134,354 - -0.3
134,357 + +0.6
134,357 + -0.8
134,358 - +0.9
134,358 - +0.4
134,374 - +0.9
134,374 - +0.0
134,374 - -0.8
134,374 - +0.7
134,374 - -0.6
134,468 - -0.9
134,468 - +0.8
134,524 - -0.9
134,562 + -0.5
134,656 + +0.2
134,682 + -0.1
134,686 + +0.3
134,744 + -0.2
134,768 + -0.1
134,780 + EX31_RS21950 0.12 -0.9
134,820 - EX31_RS21950 0.26 -1.5
134,846 + EX31_RS21950 0.36 -0.5
134,846 + EX31_RS21950 0.36 -0.6
134,847 - EX31_RS21950 0.36 +0.5
134,850 + EX31_RS21950 0.37 +0.0
134,851 - EX31_RS21950 0.37 -0.1
134,851 - EX31_RS21950 0.37 +0.3
134,936 + EX31_RS21950 0.68 +0.1
134,953 - EX31_RS21950 0.74 -1.3
135,017 + +1.4
135,017 + +0.1
135,084 + -0.1
135,084 + -0.3
135,085 - -0.5
135,087 - +0.7
135,087 - -0.8
135,138 + -0.6
135,159 + +1.3
135,181 - -1.7
135,252 - -0.4
135,252 - +0.3
135,253 + +0.2
135,253 + -0.3
135,254 - +0.1
135,261 + -0.5
135,261 + +0.3
135,262 - -1.4
135,262 - +0.4
135,262 - -0.2
135,262 - +0.8
135,289 - +0.0
135,364 + EX31_RS21955 0.14 +0.3
135,364 + EX31_RS21955 0.14 -1.0
135,547 - EX31_RS21955 0.45 +1.1
135,565 + EX31_RS21955 0.49 -0.1
135,565 + EX31_RS21955 0.49 -1.8
135,565 + EX31_RS21955 0.49 -0.2
135,565 + EX31_RS21955 0.49 +1.1
135,566 - EX31_RS21955 0.49 +0.1
135,635 + EX31_RS21955 0.61 -0.1
135,636 - EX31_RS21955 0.61 +0.4
135,636 - EX31_RS21955 0.61 -0.6
135,755 + EX31_RS21955 0.81 +1.4
135,788 + EX31_RS21955 0.87 +1.9
135,788 + EX31_RS21955 0.87 +0.2
135,789 - EX31_RS21955 0.87 +0.2
135,789 - EX31_RS21955 0.87 -0.7
135,842 + -0.1
135,843 - -2.0
135,843 - +0.3
135,843 - +0.1
135,843 - +0.7
135,845 - -0.4
135,845 - +0.8
135,881 - +1.5
135,896 + +0.2
136,015 + -0.4

Or see this region's nucleotide sequence