Strain Fitness in Rahnella sp. WP5 around EX31_RS20620

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20615 and EX31_RS20620 overlap by 4 nucleotidesEX31_RS20620 and EX31_RS20625 overlap by 1 nucleotides EX31_RS20615: EX31_RS20615 - two-component system response regulator GlrR, at 762,444 to 763,781 _RS20615 EX31_RS20620: EX31_RS20620 - two-component system QseEF-associated lipoprotein QseG, at 763,778 to 764,533 _RS20620 EX31_RS20625: EX31_RS20625 - HAMP domain-containing histidine kinase, at 764,533 to 765,972 _RS20625 Position (kb) 763 764 765Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 762.791 kb on + strand, within EX31_RS20615at 762.791 kb on + strand, within EX31_RS20615at 762.792 kb on - strand, within EX31_RS20615at 762.792 kb on - strand, within EX31_RS20615at 762.962 kb on + strand, within EX31_RS20615at 763.205 kb on + strand, within EX31_RS20615at 763.206 kb on - strand, within EX31_RS20615at 763.206 kb on - strand, within EX31_RS20615at 763.214 kb on + strand, within EX31_RS20615at 763.292 kb on + strand, within EX31_RS20615at 763.325 kb on + strand, within EX31_RS20615at 763.353 kb on - strand, within EX31_RS20615at 763.353 kb on - strand, within EX31_RS20615at 763.353 kb on - strand, within EX31_RS20615at 763.431 kb on - strand, within EX31_RS20615at 763.436 kb on + strand, within EX31_RS20615at 763.436 kb on + strand, within EX31_RS20615at 763.436 kb on + strand, within EX31_RS20615at 763.436 kb on + strand, within EX31_RS20615at 763.436 kb on + strand, within EX31_RS20615at 763.436 kb on + strand, within EX31_RS20615at 763.436 kb on + strand, within EX31_RS20615at 763.437 kb on - strand, within EX31_RS20615at 763.437 kb on - strand, within EX31_RS20615at 763.437 kb on - strand, within EX31_RS20615at 763.437 kb on - strand, within EX31_RS20615at 763.438 kb on + strand, within EX31_RS20615at 763.438 kb on + strand, within EX31_RS20615at 763.438 kb on + strand, within EX31_RS20615at 763.438 kb on + strand, within EX31_RS20615at 763.438 kb on + strand, within EX31_RS20615at 763.438 kb on + strand, within EX31_RS20615at 763.439 kb on - strand, within EX31_RS20615at 763.439 kb on - strand, within EX31_RS20615at 763.439 kb on - strand, within EX31_RS20615at 763.439 kb on - strand, within EX31_RS20615at 763.439 kb on - strand, within EX31_RS20615at 763.439 kb on - strand, within EX31_RS20615at 763.439 kb on - strand, within EX31_RS20615at 763.479 kb on + strand, within EX31_RS20615at 763.515 kb on - strand, within EX31_RS20615at 763.515 kb on - strand, within EX31_RS20615at 763.515 kb on - strand, within EX31_RS20615at 763.631 kb on + strand, within EX31_RS20615at 763.725 kb on + strandat 763.726 kb on - strandat 763.755 kb on + strandat 763.769 kb on + strandat 763.769 kb on + strandat 763.769 kb on + strandat 763.769 kb on + strandat 763.769 kb on + strandat 763.770 kb on - strandat 763.770 kb on - strandat 763.770 kb on - strandat 763.770 kb on - strandat 763.770 kb on - strandat 763.770 kb on - strandat 763.770 kb on - strandat 763.770 kb on - strandat 763.773 kb on + strandat 763.774 kb on - strandat 763.774 kb on - strandat 763.774 kb on - strandat 763.813 kb on - strandat 763.813 kb on - strandat 763.813 kb on - strandat 763.860 kb on - strand, within EX31_RS20620at 764.091 kb on - strand, within EX31_RS20620at 764.209 kb on + strand, within EX31_RS20620at 764.209 kb on + strand, within EX31_RS20620at 764.308 kb on - strand, within EX31_RS20620at 764.421 kb on + strand, within EX31_RS20620at 764.424 kb on + strand, within EX31_RS20620at 764.424 kb on + strand, within EX31_RS20620at 764.425 kb on - strand, within EX31_RS20620at 764.432 kb on - strand, within EX31_RS20620at 764.471 kb on + strandat 764.480 kb on + strandat 764.480 kb on + strandat 764.481 kb on - strandat 764.498 kb on + strandat 764.499 kb on - strandat 764.535 kb on - strandat 764.535 kb on - strandat 764.631 kb on + strandat 764.646 kb on + strandat 764.646 kb on + strandat 764.672 kb on - strandat 764.672 kb on - strandat 764.770 kb on + strand, within EX31_RS20625at 764.771 kb on - strand, within EX31_RS20625at 764.808 kb on + strand, within EX31_RS20625at 764.809 kb on - strand, within EX31_RS20625at 764.809 kb on - strand, within EX31_RS20625at 764.809 kb on - strand, within EX31_RS20625at 764.809 kb on - strand, within EX31_RS20625at 764.809 kb on - strand, within EX31_RS20625at 764.809 kb on - strand, within EX31_RS20625at 764.809 kb on - strand, within EX31_RS20625at 764.809 kb on - strand, within EX31_RS20625at 764.809 kb on - strand, within EX31_RS20625at 764.809 kb on - strand, within EX31_RS20625at 764.872 kb on + strand, within EX31_RS20625at 765.032 kb on + strand, within EX31_RS20625at 765.032 kb on + strand, within EX31_RS20625at 765.079 kb on - strand, within EX31_RS20625at 765.079 kb on - strand, within EX31_RS20625at 765.163 kb on - strand, within EX31_RS20625at 765.180 kb on + strand, within EX31_RS20625at 765.181 kb on - strand, within EX31_RS20625at 765.195 kb on + strand, within EX31_RS20625at 765.195 kb on + strand, within EX31_RS20625at 765.196 kb on - strand, within EX31_RS20625at 765.196 kb on - strand, within EX31_RS20625at 765.196 kb on - strand, within EX31_RS20625at 765.196 kb on - strand, within EX31_RS20625at 765.196 kb on - strand, within EX31_RS20625at 765.294 kb on + strand, within EX31_RS20625at 765.319 kb on - strand, within EX31_RS20625at 765.422 kb on - strand, within EX31_RS20625

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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762,791 + EX31_RS20615 0.26 +0.2
762,791 + EX31_RS20615 0.26 +0.0
762,792 - EX31_RS20615 0.26 +0.6
762,792 - EX31_RS20615 0.26 +2.3
762,962 + EX31_RS20615 0.39 +0.9
763,205 + EX31_RS20615 0.57 -0.0
763,206 - EX31_RS20615 0.57 +0.4
763,206 - EX31_RS20615 0.57 +1.9
763,214 + EX31_RS20615 0.58 -1.7
763,292 + EX31_RS20615 0.63 +0.7
763,325 + EX31_RS20615 0.66 -0.4
763,353 - EX31_RS20615 0.68 +0.1
763,353 - EX31_RS20615 0.68 -0.2
763,353 - EX31_RS20615 0.68 +0.2
763,431 - EX31_RS20615 0.74 +0.6
763,436 + EX31_RS20615 0.74 -2.1
763,436 + EX31_RS20615 0.74 +0.5
763,436 + EX31_RS20615 0.74 -2.4
763,436 + EX31_RS20615 0.74 +1.5
763,436 + EX31_RS20615 0.74 -0.7
763,436 + EX31_RS20615 0.74 +0.6
763,436 + EX31_RS20615 0.74 -0.3
763,437 - EX31_RS20615 0.74 -1.7
763,437 - EX31_RS20615 0.74 -0.7
763,437 - EX31_RS20615 0.74 -1.3
763,437 - EX31_RS20615 0.74 -0.2
763,438 + EX31_RS20615 0.74 -2.3
763,438 + EX31_RS20615 0.74 -0.5
763,438 + EX31_RS20615 0.74 +0.9
763,438 + EX31_RS20615 0.74 -1.6
763,438 + EX31_RS20615 0.74 +0.5
763,438 + EX31_RS20615 0.74 +0.4
763,439 - EX31_RS20615 0.74 -0.4
763,439 - EX31_RS20615 0.74 -0.5
763,439 - EX31_RS20615 0.74 -0.3
763,439 - EX31_RS20615 0.74 -0.1
763,439 - EX31_RS20615 0.74 +0.0
763,439 - EX31_RS20615 0.74 -0.3
763,439 - EX31_RS20615 0.74 +0.2
763,479 + EX31_RS20615 0.77 -0.6
763,515 - EX31_RS20615 0.80 +0.2
763,515 - EX31_RS20615 0.80 +0.2
763,515 - EX31_RS20615 0.80 +1.0
763,631 + EX31_RS20615 0.89 +0.4
763,725 + +0.9
763,726 - +0.2
763,755 + -0.9
763,769 + -0.4
763,769 + -0.7
763,769 + +0.7
763,769 + -0.7
763,769 + -0.4
763,770 - +0.2
763,770 - -0.1
763,770 - -0.3
763,770 - +0.4
763,770 - -0.5
763,770 - -2.4
763,770 - +1.0
763,770 - +0.4
763,773 + +1.2
763,774 - -1.1
763,774 - -0.7
763,774 - +0.5
763,813 - -1.1
763,813 - +0.5
763,813 - +0.1
763,860 - EX31_RS20620 0.11 -0.8
764,091 - EX31_RS20620 0.41 +0.0
764,209 + EX31_RS20620 0.57 -0.2
764,209 + EX31_RS20620 0.57 -0.4
764,308 - EX31_RS20620 0.70 -3.2
764,421 + EX31_RS20620 0.85 +0.5
764,424 + EX31_RS20620 0.85 -0.7
764,424 + EX31_RS20620 0.85 -0.6
764,425 - EX31_RS20620 0.86 -0.6
764,432 - EX31_RS20620 0.87 -0.6
764,471 + -1.0
764,480 + -0.3
764,480 + +0.0
764,481 - +0.4
764,498 + -1.2
764,499 - -0.1
764,535 - +0.5
764,535 - -1.3
764,631 + +0.7
764,646 + -0.9
764,646 + -0.8
764,672 - -0.0
764,672 - +0.5
764,770 + EX31_RS20625 0.16 +0.7
764,771 - EX31_RS20625 0.17 +0.1
764,808 + EX31_RS20625 0.19 +0.1
764,809 - EX31_RS20625 0.19 +0.4
764,809 - EX31_RS20625 0.19 +0.5
764,809 - EX31_RS20625 0.19 +0.0
764,809 - EX31_RS20625 0.19 +0.6
764,809 - EX31_RS20625 0.19 -0.6
764,809 - EX31_RS20625 0.19 +0.3
764,809 - EX31_RS20625 0.19 +0.2
764,809 - EX31_RS20625 0.19 -0.5
764,809 - EX31_RS20625 0.19 +0.1
764,809 - EX31_RS20625 0.19 -0.3
764,872 + EX31_RS20625 0.24 +0.7
765,032 + EX31_RS20625 0.35 -0.3
765,032 + EX31_RS20625 0.35 -0.8
765,079 - EX31_RS20625 0.38 +0.4
765,079 - EX31_RS20625 0.38 -0.3
765,163 - EX31_RS20625 0.44 -0.7
765,180 + EX31_RS20625 0.45 -0.5
765,181 - EX31_RS20625 0.45 +0.0
765,195 + EX31_RS20625 0.46 -0.8
765,195 + EX31_RS20625 0.46 +0.4
765,196 - EX31_RS20625 0.46 +0.3
765,196 - EX31_RS20625 0.46 -0.0
765,196 - EX31_RS20625 0.46 -1.9
765,196 - EX31_RS20625 0.46 +0.0
765,196 - EX31_RS20625 0.46 -1.2
765,294 + EX31_RS20625 0.53 +0.8
765,319 - EX31_RS20625 0.55 +0.8
765,422 - EX31_RS20625 0.62 -1.5

Or see this region's nucleotide sequence