Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13960 and EX31_RS13965 overlap by 8 nucleotides EX31_RS13965 and EX31_RS13970 are separated by 46 nucleotides EX31_RS13970 and EX31_RS13975 are separated by 142 nucleotides
EX31_RS13960: EX31_RS13960 - iron ABC transporter permease, at 55,618 to 56,592
_RS13960
EX31_RS13965: EX31_RS13965 - heme ABC transporter ATP-binding protein, at 56,585 to 57,373
_RS13965
EX31_RS13970: EX31_RS13970 - YdiU family protein, at 57,420 to 58,874
_RS13970
EX31_RS13975: EX31_RS13975 - EAL domain-containing protein, at 59,017 to 59,745
_RS13975
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.423 kb on + strand, within EX31_RS13960 at 56.545 kb on + strand at 56.737 kb on + strand, within EX31_RS13965 at 56.737 kb on + strand, within EX31_RS13965 at 56.750 kb on + strand, within EX31_RS13965 at 56.840 kb on - strand, within EX31_RS13965 at 56.854 kb on + strand, within EX31_RS13965 at 56.854 kb on + strand, within EX31_RS13965 at 56.854 kb on + strand, within EX31_RS13965 at 56.854 kb on + strand, within EX31_RS13965 at 56.854 kb on + strand, within EX31_RS13965 at 56.855 kb on - strand, within EX31_RS13965 at 56.873 kb on - strand, within EX31_RS13965 at 56.886 kb on + strand, within EX31_RS13965 at 56.886 kb on + strand, within EX31_RS13965 at 56.886 kb on + strand, within EX31_RS13965 at 57.094 kb on + strand, within EX31_RS13965 at 57.111 kb on + strand, within EX31_RS13965 at 57.114 kb on - strand, within EX31_RS13965 at 57.151 kb on - strand, within EX31_RS13965 at 57.212 kb on + strand, within EX31_RS13965 at 57.212 kb on + strand, within EX31_RS13965 at 57.213 kb on - strand, within EX31_RS13965 at 57.213 kb on - strand, within EX31_RS13965 at 57.436 kb on - strand at 57.502 kb on + strand at 57.546 kb on - strand at 57.586 kb on + strand, within EX31_RS13970 at 57.600 kb on - strand, within EX31_RS13970 at 57.612 kb on - strand, within EX31_RS13970 at 57.651 kb on - strand, within EX31_RS13970 at 57.890 kb on - strand, within EX31_RS13970 at 58.016 kb on - strand, within EX31_RS13970 at 58.052 kb on + strand, within EX31_RS13970 at 58.054 kb on + strand, within EX31_RS13970 at 58.121 kb on + strand, within EX31_RS13970 at 58.121 kb on + strand, within EX31_RS13970 at 58.122 kb on - strand, within EX31_RS13970 at 58.122 kb on - strand, within EX31_RS13970 at 58.122 kb on - strand, within EX31_RS13970 at 58.157 kb on + strand, within EX31_RS13970 at 58.279 kb on + strand, within EX31_RS13970 at 58.279 kb on + strand, within EX31_RS13970 at 58.279 kb on + strand, within EX31_RS13970 at 58.280 kb on - strand, within EX31_RS13970 at 58.280 kb on - strand, within EX31_RS13970 at 58.280 kb on - strand, within EX31_RS13970 at 58.280 kb on - strand, within EX31_RS13970 at 58.280 kb on - strand, within EX31_RS13970 at 58.280 kb on - strand, within EX31_RS13970 at 58.321 kb on + strand, within EX31_RS13970 at 58.321 kb on + strand, within EX31_RS13970 at 58.465 kb on - strand, within EX31_RS13970 at 58.535 kb on - strand, within EX31_RS13970 at 58.588 kb on - strand, within EX31_RS13970 at 58.662 kb on - strand, within EX31_RS13970 at 58.662 kb on - strand, within EX31_RS13970 at 58.663 kb on + strand, within EX31_RS13970 at 58.853 kb on - strand at 58.875 kb on - strand at 58.896 kb on + strand at 58.896 kb on + strand at 58.897 kb on - strand at 58.913 kb on - strand at 58.913 kb on - strand at 58.917 kb on - strand at 58.942 kb on - strand at 59.102 kb on - strand, within EX31_RS13975 at 59.102 kb on - strand, within EX31_RS13975 at 59.102 kb on - strand, within EX31_RS13975 at 59.102 kb on - strand, within EX31_RS13975 at 59.117 kb on - strand, within EX31_RS13975 at 59.130 kb on - strand, within EX31_RS13975 at 59.161 kb on - strand, within EX31_RS13975 at 59.424 kb on + strand, within EX31_RS13975 at 59.424 kb on + strand, within EX31_RS13975 at 59.424 kb on + strand, within EX31_RS13975 at 59.425 kb on - strand, within EX31_RS13975 at 59.425 kb on - strand, within EX31_RS13975 at 59.425 kb on - strand, within EX31_RS13975 at 59.425 kb on - strand, within EX31_RS13975 at 59.425 kb on - strand, within EX31_RS13975 at 59.468 kb on - strand, within EX31_RS13975 at 59.506 kb on - strand, within EX31_RS13975 at 59.548 kb on + strand, within EX31_RS13975 at 59.575 kb on + strand, within EX31_RS13975 at 59.602 kb on + strand, within EX31_RS13975 at 59.603 kb on - strand, within EX31_RS13975 at 59.689 kb on - strand at 59.691 kb on - strand at 59.691 kb on - strand at 59.708 kb on + strand at 59.781 kb on + strand at 59.782 kb on - strand at 59.782 kb on - strand at 59.811 kb on + strand at 59.811 kb on + strand at 59.812 kb on - strand at 59.845 kb on - strand at 59.860 kb on - strand at 59.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 56,423 + EX31_RS13960 0.83 +0.6 56,545 + -0.5 56,737 + EX31_RS13965 0.19 +0.2 56,737 + EX31_RS13965 0.19 -1.1 56,750 + EX31_RS13965 0.21 -1.5 56,840 - EX31_RS13965 0.32 +0.7 56,854 + EX31_RS13965 0.34 +0.2 56,854 + EX31_RS13965 0.34 -0.7 56,854 + EX31_RS13965 0.34 -1.8 56,854 + EX31_RS13965 0.34 -0.1 56,854 + EX31_RS13965 0.34 +0.3 56,855 - EX31_RS13965 0.34 +0.2 56,873 - EX31_RS13965 0.37 +1.9 56,886 + EX31_RS13965 0.38 -0.4 56,886 + EX31_RS13965 0.38 +0.6 56,886 + EX31_RS13965 0.38 -2.4 57,094 + EX31_RS13965 0.65 -0.9 57,111 + EX31_RS13965 0.67 -0.0 57,114 - EX31_RS13965 0.67 -0.3 57,151 - EX31_RS13965 0.72 -0.1 57,212 + EX31_RS13965 0.79 +0.4 57,212 + EX31_RS13965 0.79 -0.4 57,213 - EX31_RS13965 0.80 +0.9 57,213 - EX31_RS13965 0.80 -0.6 57,436 - +0.2 57,502 + +0.9 57,546 - +1.6 57,586 + EX31_RS13970 0.11 +0.2 57,600 - EX31_RS13970 0.12 -1.2 57,612 - EX31_RS13970 0.13 -1.1 57,651 - EX31_RS13970 0.16 -0.9 57,890 - EX31_RS13970 0.32 -1.0 58,016 - EX31_RS13970 0.41 -0.6 58,052 + EX31_RS13970 0.43 -1.0 58,054 + EX31_RS13970 0.44 +0.4 58,121 + EX31_RS13970 0.48 +0.1 58,121 + EX31_RS13970 0.48 +1.2 58,122 - EX31_RS13970 0.48 -1.1 58,122 - EX31_RS13970 0.48 -0.6 58,122 - EX31_RS13970 0.48 -2.3 58,157 + EX31_RS13970 0.51 -1.1 58,279 + EX31_RS13970 0.59 -1.3 58,279 + EX31_RS13970 0.59 +0.4 58,279 + EX31_RS13970 0.59 +0.6 58,280 - EX31_RS13970 0.59 -0.1 58,280 - EX31_RS13970 0.59 -0.9 58,280 - EX31_RS13970 0.59 -0.1 58,280 - EX31_RS13970 0.59 -0.2 58,280 - EX31_RS13970 0.59 -1.0 58,280 - EX31_RS13970 0.59 -0.3 58,321 + EX31_RS13970 0.62 -1.1 58,321 + EX31_RS13970 0.62 -0.9 58,465 - EX31_RS13970 0.72 -0.1 58,535 - EX31_RS13970 0.77 -0.6 58,588 - EX31_RS13970 0.80 +0.5 58,662 - EX31_RS13970 0.85 +1.0 58,662 - EX31_RS13970 0.85 -0.4 58,663 + EX31_RS13970 0.85 +0.4 58,853 - +1.9 58,875 - -0.6 58,896 + -1.0 58,896 + -2.3 58,897 - -0.7 58,913 - +0.9 58,913 - -1.8 58,917 - -0.3 58,942 - +0.3 59,102 - EX31_RS13975 0.12 -0.9 59,102 - EX31_RS13975 0.12 -0.9 59,102 - EX31_RS13975 0.12 +1.6 59,102 - EX31_RS13975 0.12 +0.2 59,117 - EX31_RS13975 0.14 -0.9 59,130 - EX31_RS13975 0.16 -1.3 59,161 - EX31_RS13975 0.20 -0.9 59,424 + EX31_RS13975 0.56 +0.4 59,424 + EX31_RS13975 0.56 +0.3 59,424 + EX31_RS13975 0.56 -2.7 59,425 - EX31_RS13975 0.56 -0.1 59,425 - EX31_RS13975 0.56 +0.3 59,425 - EX31_RS13975 0.56 +0.3 59,425 - EX31_RS13975 0.56 -0.1 59,425 - EX31_RS13975 0.56 -1.9 59,468 - EX31_RS13975 0.62 -1.4 59,506 - EX31_RS13975 0.67 -1.0 59,548 + EX31_RS13975 0.73 -0.5 59,575 + EX31_RS13975 0.77 -0.4 59,602 + EX31_RS13975 0.80 +0.1 59,603 - EX31_RS13975 0.80 -0.2 59,689 - +0.4 59,691 - +0.0 59,691 - -1.6 59,708 + -1.4 59,781 + +0.8 59,782 - -1.6 59,782 - -2.8 59,811 + +0.7 59,811 + +0.4 59,812 - -0.7 59,845 - -0.7 59,860 - -0.4 59,860 - +0.3
Or see this region's nucleotide sequence