Strain Fitness in Rahnella sp. WP5 around EX31_RS03070

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03065 and EX31_RS03070 are separated by 289 nucleotidesEX31_RS03070 and EX31_RS03075 are separated by 262 nucleotides EX31_RS03065: EX31_RS03065 - chitinase, at 94,786 to 96,570 _RS03065 EX31_RS03070: EX31_RS03070 - hypothetical protein, at 96,860 to 97,126 _RS03070 EX31_RS03075: EX31_RS03075 - LysR family transcriptional regulator, at 97,389 to 98,330 _RS03075 Position (kb) 96 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1at 95.903 kb on + strand, within EX31_RS03065at 95.904 kb on - strand, within EX31_RS03065at 95.907 kb on + strand, within EX31_RS03065at 95.907 kb on + strand, within EX31_RS03065at 95.908 kb on - strand, within EX31_RS03065at 95.908 kb on - strand, within EX31_RS03065at 95.908 kb on - strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.909 kb on + strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.910 kb on - strand, within EX31_RS03065at 95.913 kb on + strand, within EX31_RS03065at 95.913 kb on + strand, within EX31_RS03065at 95.913 kb on + strand, within EX31_RS03065at 95.913 kb on + strand, within EX31_RS03065at 95.913 kb on + strand, within EX31_RS03065at 95.913 kb on + strand, within EX31_RS03065at 95.913 kb on + strand, within EX31_RS03065at 95.914 kb on - strand, within EX31_RS03065at 95.914 kb on - strand, within EX31_RS03065at 95.914 kb on - strand, within EX31_RS03065at 95.914 kb on - strand, within EX31_RS03065at 95.914 kb on - strand, within EX31_RS03065at 95.914 kb on - strand, within EX31_RS03065at 95.914 kb on - strand, within EX31_RS03065at 95.914 kb on - strand, within EX31_RS03065at 95.914 kb on - strand, within EX31_RS03065at 95.915 kb on + strand, within EX31_RS03065at 95.915 kb on + strand, within EX31_RS03065at 95.916 kb on - strand, within EX31_RS03065at 95.916 kb on - strand, within EX31_RS03065at 95.916 kb on - strand, within EX31_RS03065at 95.945 kb on + strand, within EX31_RS03065at 95.946 kb on - strand, within EX31_RS03065at 95.946 kb on - strand, within EX31_RS03065at 96.012 kb on + strand, within EX31_RS03065at 96.012 kb on + strand, within EX31_RS03065at 96.013 kb on - strand, within EX31_RS03065at 96.026 kb on + strand, within EX31_RS03065at 96.026 kb on + strand, within EX31_RS03065at 96.026 kb on + strand, within EX31_RS03065at 96.027 kb on - strand, within EX31_RS03065at 96.068 kb on + strand, within EX31_RS03065at 96.068 kb on + strand, within EX31_RS03065at 96.068 kb on + strand, within EX31_RS03065at 96.069 kb on - strand, within EX31_RS03065at 96.069 kb on - strand, within EX31_RS03065at 96.069 kb on - strand, within EX31_RS03065at 96.197 kb on + strand, within EX31_RS03065at 96.197 kb on + strand, within EX31_RS03065at 96.197 kb on + strand, within EX31_RS03065at 96.198 kb on - strand, within EX31_RS03065at 96.198 kb on - strand, within EX31_RS03065at 96.198 kb on - strand, within EX31_RS03065at 96.198 kb on - strand, within EX31_RS03065at 96.248 kb on + strand, within EX31_RS03065at 96.248 kb on + strand, within EX31_RS03065at 96.248 kb on + strand, within EX31_RS03065at 96.248 kb on + strand, within EX31_RS03065at 96.248 kb on + strand, within EX31_RS03065at 96.249 kb on - strand, within EX31_RS03065at 96.249 kb on - strand, within EX31_RS03065at 96.249 kb on - strand, within EX31_RS03065at 96.249 kb on - strand, within EX31_RS03065at 96.249 kb on - strand, within EX31_RS03065at 96.252 kb on + strand, within EX31_RS03065at 96.252 kb on + strand, within EX31_RS03065at 96.252 kb on + strand, within EX31_RS03065at 96.253 kb on - strand, within EX31_RS03065at 96.253 kb on - strand, within EX31_RS03065at 96.253 kb on - strand, within EX31_RS03065at 96.253 kb on - strand, within EX31_RS03065at 96.254 kb on + strand, within EX31_RS03065at 96.254 kb on + strand, within EX31_RS03065at 96.254 kb on + strand, within EX31_RS03065at 96.254 kb on + strand, within EX31_RS03065at 96.254 kb on + strand, within EX31_RS03065at 96.254 kb on + strand, within EX31_RS03065at 96.254 kb on + strand, within EX31_RS03065at 96.254 kb on + strand, within EX31_RS03065at 96.254 kb on + strand, within EX31_RS03065at 96.254 kb on + strand, within EX31_RS03065at 96.255 kb on - strand, within EX31_RS03065at 96.255 kb on - strand, within EX31_RS03065at 96.255 kb on - strand, within EX31_RS03065at 96.255 kb on - strand, within EX31_RS03065at 96.255 kb on - strand, within EX31_RS03065at 96.291 kb on + strand, within EX31_RS03065at 96.291 kb on + strand, within EX31_RS03065at 96.292 kb on - strand, within EX31_RS03065at 96.336 kb on + strand, within EX31_RS03065at 96.379 kb on - strand, within EX31_RS03065at 96.470 kb on + strandat 96.470 kb on + strandat 96.470 kb on + strandat 96.471 kb on - strandat 96.471 kb on - strandat 96.531 kb on + strandat 96.531 kb on + strandat 96.532 kb on - strandat 96.548 kb on + strandat 96.552 kb on + strandat 96.552 kb on + strandat 96.559 kb on - strandat 96.571 kb on - strandat 96.582 kb on + strandat 96.583 kb on - strandat 96.583 kb on - strandat 96.584 kb on + strandat 96.587 kb on - strandat 96.587 kb on - strandat 96.696 kb on - strandat 96.719 kb on + strandat 96.742 kb on + strandat 96.743 kb on - strandat 96.762 kb on + strandat 96.819 kb on + strandat 96.820 kb on - strandat 96.820 kb on - strandat 96.823 kb on + strandat 96.841 kb on - strandat 96.947 kb on + strand, within EX31_RS03070at 96.948 kb on - strand, within EX31_RS03070at 96.974 kb on - strand, within EX31_RS03070at 97.056 kb on + strand, within EX31_RS03070at 97.057 kb on - strand, within EX31_RS03070at 97.127 kb on - strandat 97.134 kb on - strandat 97.145 kb on + strandat 97.356 kb on - strandat 97.366 kb on - strandat 97.472 kb on - strandat 97.549 kb on + strand, within EX31_RS03075at 97.550 kb on - strand, within EX31_RS03075at 97.611 kb on - strand, within EX31_RS03075at 97.634 kb on - strand, within EX31_RS03075at 97.634 kb on - strand, within EX31_RS03075at 97.697 kb on + strand, within EX31_RS03075at 97.708 kb on + strand, within EX31_RS03075at 97.708 kb on + strand, within EX31_RS03075at 97.709 kb on - strand, within EX31_RS03075at 97.709 kb on - strand, within EX31_RS03075at 97.721 kb on + strand, within EX31_RS03075at 97.723 kb on + strand, within EX31_RS03075at 97.744 kb on + strand, within EX31_RS03075at 97.745 kb on - strand, within EX31_RS03075at 97.747 kb on + strand, within EX31_RS03075at 97.748 kb on - strand, within EX31_RS03075at 97.790 kb on + strand, within EX31_RS03075at 97.834 kb on - strand, within EX31_RS03075at 97.982 kb on - strand, within EX31_RS03075at 97.999 kb on + strand, within EX31_RS03075at 98.000 kb on - strand, within EX31_RS03075at 98.035 kb on - strand, within EX31_RS03075at 98.070 kb on + strand, within EX31_RS03075at 98.070 kb on + strand, within EX31_RS03075at 98.085 kb on - strand, within EX31_RS03075

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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95,903 + EX31_RS03065 0.63 +0.3
95,904 - EX31_RS03065 0.63 +0.2
95,907 + EX31_RS03065 0.63 -2.0
95,907 + EX31_RS03065 0.63 -0.3
95,908 - EX31_RS03065 0.63 +0.1
95,908 - EX31_RS03065 0.63 -0.1
95,908 - EX31_RS03065 0.63 -1.6
95,909 + EX31_RS03065 0.63 +0.3
95,909 + EX31_RS03065 0.63 -0.9
95,909 + EX31_RS03065 0.63 -0.0
95,909 + EX31_RS03065 0.63 -0.2
95,909 + EX31_RS03065 0.63 -0.0
95,909 + EX31_RS03065 0.63 -0.5
95,909 + EX31_RS03065 0.63 -0.4
95,909 + EX31_RS03065 0.63 -0.1
95,909 + EX31_RS03065 0.63 +0.5
95,909 + EX31_RS03065 0.63 +0.2
95,909 + EX31_RS03065 0.63 +0.2
95,909 + EX31_RS03065 0.63 +0.2
95,909 + EX31_RS03065 0.63 +0.3
95,909 + EX31_RS03065 0.63 +0.6
95,909 + EX31_RS03065 0.63 +0.0
95,909 + EX31_RS03065 0.63 -1.9
95,909 + EX31_RS03065 0.63 +0.9
95,909 + EX31_RS03065 0.63 +0.0
95,910 - EX31_RS03065 0.63 +0.4
95,910 - EX31_RS03065 0.63 -0.1
95,910 - EX31_RS03065 0.63 -1.6
95,910 - EX31_RS03065 0.63 -0.2
95,910 - EX31_RS03065 0.63 +0.2
95,910 - EX31_RS03065 0.63 -1.8
95,910 - EX31_RS03065 0.63 +0.1
95,910 - EX31_RS03065 0.63 -0.1
95,910 - EX31_RS03065 0.63 +1.1
95,910 - EX31_RS03065 0.63 +0.2
95,910 - EX31_RS03065 0.63 +0.4
95,910 - EX31_RS03065 0.63 +0.1
95,910 - EX31_RS03065 0.63 -0.4
95,910 - EX31_RS03065 0.63 -0.5
95,910 - EX31_RS03065 0.63 +0.4
95,910 - EX31_RS03065 0.63 -0.8
95,913 + EX31_RS03065 0.63 +1.0
95,913 + EX31_RS03065 0.63 -1.1
95,913 + EX31_RS03065 0.63 -0.2
95,913 + EX31_RS03065 0.63 -0.1
95,913 + EX31_RS03065 0.63 -0.0
95,913 + EX31_RS03065 0.63 -0.5
95,913 + EX31_RS03065 0.63 +1.0
95,914 - EX31_RS03065 0.63 -0.3
95,914 - EX31_RS03065 0.63 +0.1
95,914 - EX31_RS03065 0.63 -0.5
95,914 - EX31_RS03065 0.63 +0.4
95,914 - EX31_RS03065 0.63 -0.1
95,914 - EX31_RS03065 0.63 +0.3
95,914 - EX31_RS03065 0.63 +0.1
95,914 - EX31_RS03065 0.63 -0.2
95,914 - EX31_RS03065 0.63 +0.1
95,915 + EX31_RS03065 0.63 +0.5
95,915 + EX31_RS03065 0.63 -2.5
95,916 - EX31_RS03065 0.63 +0.3
95,916 - EX31_RS03065 0.63 +0.1
95,916 - EX31_RS03065 0.63 -0.3
95,945 + EX31_RS03065 0.65 +0.6
95,946 - EX31_RS03065 0.65 -0.5
95,946 - EX31_RS03065 0.65 -0.2
96,012 + EX31_RS03065 0.69 -1.3
96,012 + EX31_RS03065 0.69 +0.4
96,013 - EX31_RS03065 0.69 -0.7
96,026 + EX31_RS03065 0.69 +0.9
96,026 + EX31_RS03065 0.69 +0.2
96,026 + EX31_RS03065 0.69 -0.2
96,027 - EX31_RS03065 0.70 +0.2
96,068 + EX31_RS03065 0.72 +0.4
96,068 + EX31_RS03065 0.72 -0.4
96,068 + EX31_RS03065 0.72 -2.9
96,069 - EX31_RS03065 0.72 +0.7
96,069 - EX31_RS03065 0.72 +1.1
96,069 - EX31_RS03065 0.72 -1.4
96,197 + EX31_RS03065 0.79 -0.5
96,197 + EX31_RS03065 0.79 -0.6
96,197 + EX31_RS03065 0.79 +1.0
96,198 - EX31_RS03065 0.79 +0.1
96,198 - EX31_RS03065 0.79 +0.5
96,198 - EX31_RS03065 0.79 +0.3
96,198 - EX31_RS03065 0.79 +1.1
96,248 + EX31_RS03065 0.82 -0.1
96,248 + EX31_RS03065 0.82 +0.7
96,248 + EX31_RS03065 0.82 -0.2
96,248 + EX31_RS03065 0.82 -0.0
96,248 + EX31_RS03065 0.82 -1.5
96,249 - EX31_RS03065 0.82 -0.3
96,249 - EX31_RS03065 0.82 +0.8
96,249 - EX31_RS03065 0.82 +0.2
96,249 - EX31_RS03065 0.82 +0.1
96,249 - EX31_RS03065 0.82 -0.4
96,252 + EX31_RS03065 0.82 -0.9
96,252 + EX31_RS03065 0.82 +0.6
96,252 + EX31_RS03065 0.82 +0.3
96,253 - EX31_RS03065 0.82 -0.3
96,253 - EX31_RS03065 0.82 -0.3
96,253 - EX31_RS03065 0.82 -1.3
96,253 - EX31_RS03065 0.82 +0.3
96,254 + EX31_RS03065 0.82 +1.0
96,254 + EX31_RS03065 0.82 -0.7
96,254 + EX31_RS03065 0.82 -0.5
96,254 + EX31_RS03065 0.82 -0.4
96,254 + EX31_RS03065 0.82 -0.0
96,254 + EX31_RS03065 0.82 -0.2
96,254 + EX31_RS03065 0.82 -1.9
96,254 + EX31_RS03065 0.82 +1.1
96,254 + EX31_RS03065 0.82 -0.0
96,254 + EX31_RS03065 0.82 +0.1
96,255 - EX31_RS03065 0.82 -0.1
96,255 - EX31_RS03065 0.82 -0.3
96,255 - EX31_RS03065 0.82 -2.5
96,255 - EX31_RS03065 0.82 +0.9
96,255 - EX31_RS03065 0.82 -1.3
96,291 + EX31_RS03065 0.84 +0.2
96,291 + EX31_RS03065 0.84 -0.7
96,292 - EX31_RS03065 0.84 -0.2
96,336 + EX31_RS03065 0.87 +0.2
96,379 - EX31_RS03065 0.89 -0.1
96,470 + +0.7
96,470 + +0.2
96,470 + -1.8
96,471 - -2.3
96,471 - +0.1
96,531 + -0.8
96,531 + +1.3
96,532 - +0.1
96,548 + -1.2
96,552 + +0.8
96,552 + -0.3
96,559 - +0.2
96,571 - +0.0
96,582 + -1.3
96,583 - -0.6
96,583 - +0.1
96,584 + +0.7
96,587 - -0.0
96,587 - +0.7
96,696 - +0.1
96,719 + +0.0
96,742 + -1.1
96,743 - +0.2
96,762 + -0.3
96,819 + +0.6
96,820 - -0.9
96,820 - +0.1
96,823 + -0.3
96,841 - -2.0
96,947 + EX31_RS03070 0.33 -1.7
96,948 - EX31_RS03070 0.33 -0.9
96,974 - EX31_RS03070 0.43 -0.2
97,056 + EX31_RS03070 0.73 +0.1
97,057 - EX31_RS03070 0.74 +0.0
97,127 - -1.3
97,134 - -0.1
97,145 + -0.9
97,356 - -0.0
97,366 - -1.4
97,472 - -1.8
97,549 + EX31_RS03075 0.17 +0.3
97,550 - EX31_RS03075 0.17 -0.9
97,611 - EX31_RS03075 0.24 +0.7
97,634 - EX31_RS03075 0.26 +0.1
97,634 - EX31_RS03075 0.26 +0.3
97,697 + EX31_RS03075 0.33 -1.1
97,708 + EX31_RS03075 0.34 -1.7
97,708 + EX31_RS03075 0.34 +0.3
97,709 - EX31_RS03075 0.34 -0.4
97,709 - EX31_RS03075 0.34 +0.2
97,721 + EX31_RS03075 0.35 -0.4
97,723 + EX31_RS03075 0.35 +0.9
97,744 + EX31_RS03075 0.38 +1.7
97,745 - EX31_RS03075 0.38 +0.2
97,747 + EX31_RS03075 0.38 -0.3
97,748 - EX31_RS03075 0.38 -0.3
97,790 + EX31_RS03075 0.43 +0.5
97,834 - EX31_RS03075 0.47 -0.6
97,982 - EX31_RS03075 0.63 -0.1
97,999 + EX31_RS03075 0.65 -0.7
98,000 - EX31_RS03075 0.65 -1.0
98,035 - EX31_RS03075 0.69 -0.6
98,070 + EX31_RS03075 0.72 -0.3
98,070 + EX31_RS03075 0.72 -0.8
98,085 - EX31_RS03075 0.74 +0.4

Or see this region's nucleotide sequence