Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01840 and EX31_RS01845 are separated by 72 nucleotides EX31_RS01845 and EX31_RS01850 are separated by 845 nucleotides
EX31_RS01840: EX31_RS01840 - PAS domain-containing protein, at 396,094 to 397,641
_RS01840
EX31_RS01845: EX31_RS01845 - HAMP domain-containing protein, at 397,714 to 399,261
_RS01845
EX31_RS01850: EX31_RS01850 - type VI secretion system contractile sheath small subunit, at 400,107 to 400,601
_RS01850
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -2
-1
0
1 at 396.840 kb on + strand, within EX31_RS01840 at 396.973 kb on - strand, within EX31_RS01840 at 396.973 kb on - strand, within EX31_RS01840 at 397.140 kb on + strand, within EX31_RS01840 at 397.141 kb on - strand, within EX31_RS01840 at 397.374 kb on - strand, within EX31_RS01840 at 397.646 kb on - strand at 397.646 kb on - strand at 397.652 kb on + strand at 397.715 kb on + strand at 397.903 kb on - strand, within EX31_RS01845 at 397.913 kb on - strand, within EX31_RS01845 at 397.917 kb on + strand, within EX31_RS01845 at 398.185 kb on - strand, within EX31_RS01845 at 398.217 kb on + strand, within EX31_RS01845 at 398.320 kb on - strand, within EX31_RS01845 at 398.412 kb on + strand, within EX31_RS01845 at 398.413 kb on - strand, within EX31_RS01845 at 398.413 kb on - strand, within EX31_RS01845 at 398.415 kb on + strand, within EX31_RS01845 at 398.415 kb on + strand, within EX31_RS01845 at 398.452 kb on - strand, within EX31_RS01845 at 398.477 kb on - strand, within EX31_RS01845 at 398.478 kb on + strand, within EX31_RS01845 at 398.479 kb on - strand, within EX31_RS01845 at 398.502 kb on + strand, within EX31_RS01845 at 398.502 kb on + strand, within EX31_RS01845 at 398.502 kb on + strand, within EX31_RS01845 at 398.503 kb on - strand, within EX31_RS01845 at 398.678 kb on - strand, within EX31_RS01845 at 398.736 kb on + strand, within EX31_RS01845 at 398.778 kb on + strand, within EX31_RS01845 at 398.796 kb on - strand, within EX31_RS01845 at 398.907 kb on - strand, within EX31_RS01845 at 398.907 kb on - strand, within EX31_RS01845 at 398.911 kb on - strand, within EX31_RS01845 at 398.911 kb on - strand, within EX31_RS01845 at 398.911 kb on - strand, within EX31_RS01845 at 398.966 kb on + strand, within EX31_RS01845 at 398.967 kb on - strand, within EX31_RS01845 at 399.064 kb on - strand, within EX31_RS01845 at 399.064 kb on - strand, within EX31_RS01845 at 399.065 kb on + strand, within EX31_RS01845 at 399.066 kb on - strand, within EX31_RS01845 at 399.066 kb on - strand, within EX31_RS01845 at 399.165 kb on + strand at 400.057 kb on - strand at 400.095 kb on + strand at 400.115 kb on + strand at 400.165 kb on + strand, within EX31_RS01850
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 396,840 + EX31_RS01840 0.48 -1.2 396,973 - EX31_RS01840 0.57 -0.4 396,973 - EX31_RS01840 0.57 -1.7 397,140 + EX31_RS01840 0.68 +0.3 397,141 - EX31_RS01840 0.68 -0.6 397,374 - EX31_RS01840 0.83 -1.1 397,646 - +1.5 397,646 - +0.5 397,652 + +0.7 397,715 + +0.9 397,903 - EX31_RS01845 0.12 -0.2 397,913 - EX31_RS01845 0.13 -0.1 397,917 + EX31_RS01845 0.13 -1.4 398,185 - EX31_RS01845 0.30 -1.6 398,217 + EX31_RS01845 0.32 +0.5 398,320 - EX31_RS01845 0.39 +0.5 398,412 + EX31_RS01845 0.45 -0.5 398,413 - EX31_RS01845 0.45 +0.0 398,413 - EX31_RS01845 0.45 +0.7 398,415 + EX31_RS01845 0.45 +1.0 398,415 + EX31_RS01845 0.45 -1.2 398,452 - EX31_RS01845 0.48 +1.6 398,477 - EX31_RS01845 0.49 +0.2 398,478 + EX31_RS01845 0.49 +0.1 398,479 - EX31_RS01845 0.49 -0.9 398,502 + EX31_RS01845 0.51 -0.0 398,502 + EX31_RS01845 0.51 +0.4 398,502 + EX31_RS01845 0.51 -1.0 398,503 - EX31_RS01845 0.51 +1.6 398,678 - EX31_RS01845 0.62 +1.2 398,736 + EX31_RS01845 0.66 -1.6 398,778 + EX31_RS01845 0.69 -0.2 398,796 - EX31_RS01845 0.70 +0.5 398,907 - EX31_RS01845 0.77 -0.6 398,907 - EX31_RS01845 0.77 -0.1 398,911 - EX31_RS01845 0.77 -0.4 398,911 - EX31_RS01845 0.77 +0.4 398,911 - EX31_RS01845 0.77 +0.0 398,966 + EX31_RS01845 0.81 -0.8 398,967 - EX31_RS01845 0.81 -0.4 399,064 - EX31_RS01845 0.87 -1.2 399,064 - EX31_RS01845 0.87 -2.0 399,065 + EX31_RS01845 0.87 -1.1 399,066 - EX31_RS01845 0.87 -0.8 399,066 - EX31_RS01845 0.87 +0.2 399,165 + +0.8 400,057 - +0.7 400,095 + -0.9 400,115 + +1.2 400,165 + EX31_RS01850 0.12 +1.1
Or see this region's nucleotide sequence