Strain Fitness in Rahnella sp. WP5 around EX31_RS01835

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01830 and EX31_RS01835 are separated by 146 nucleotidesEX31_RS01835 and EX31_RS01840 are separated by 405 nucleotides EX31_RS01830: EX31_RS01830 - 5-histidylcysteine sulfoxide synthase, at 392,276 to 394,417 _RS01830 EX31_RS01835: EX31_RS01835 - site-specific integrase, at 394,564 to 395,688 _RS01835 EX31_RS01840: EX31_RS01840 - PAS domain-containing protein, at 396,094 to 397,641 _RS01840 Position (kb) 394 395 396Strain fitness (log2 ratio) -2 -1 0 1at 393.650 kb on - strand, within EX31_RS01830at 393.686 kb on - strand, within EX31_RS01830at 393.727 kb on - strand, within EX31_RS01830at 393.748 kb on + strand, within EX31_RS01830at 393.748 kb on + strand, within EX31_RS01830at 393.749 kb on - strand, within EX31_RS01830at 393.796 kb on + strand, within EX31_RS01830at 393.797 kb on - strand, within EX31_RS01830at 393.802 kb on + strand, within EX31_RS01830at 393.897 kb on - strand, within EX31_RS01830at 393.897 kb on - strand, within EX31_RS01830at 393.897 kb on - strand, within EX31_RS01830at 394.000 kb on + strand, within EX31_RS01830at 394.001 kb on - strand, within EX31_RS01830at 394.023 kb on - strand, within EX31_RS01830at 394.023 kb on - strand, within EX31_RS01830at 394.067 kb on - strand, within EX31_RS01830at 394.067 kb on - strand, within EX31_RS01830at 394.069 kb on - strand, within EX31_RS01830at 394.069 kb on - strand, within EX31_RS01830at 394.178 kb on - strand, within EX31_RS01830at 394.180 kb on + strand, within EX31_RS01830at 394.181 kb on - strand, within EX31_RS01830at 394.315 kb on - strandat 394.422 kb on - strandat 394.463 kb on + strandat 394.512 kb on - strandat 394.514 kb on - strandat 394.514 kb on - strandat 394.557 kb on - strandat 394.669 kb on - strandat 394.669 kb on - strandat 394.669 kb on - strandat 394.728 kb on - strand, within EX31_RS01835at 394.728 kb on - strand, within EX31_RS01835at 394.728 kb on - strand, within EX31_RS01835at 394.761 kb on + strand, within EX31_RS01835at 394.839 kb on + strand, within EX31_RS01835at 394.839 kb on + strand, within EX31_RS01835at 394.840 kb on - strand, within EX31_RS01835at 394.873 kb on + strand, within EX31_RS01835at 394.874 kb on - strand, within EX31_RS01835at 394.885 kb on + strand, within EX31_RS01835at 394.976 kb on - strand, within EX31_RS01835at 395.041 kb on - strand, within EX31_RS01835at 395.275 kb on - strand, within EX31_RS01835at 395.278 kb on + strand, within EX31_RS01835at 395.278 kb on + strand, within EX31_RS01835at 395.279 kb on - strand, within EX31_RS01835at 395.279 kb on - strand, within EX31_RS01835at 395.298 kb on - strand, within EX31_RS01835at 395.298 kb on - strand, within EX31_RS01835at 395.332 kb on - strand, within EX31_RS01835at 395.332 kb on - strand, within EX31_RS01835at 395.332 kb on - strand, within EX31_RS01835at 395.332 kb on - strand, within EX31_RS01835at 395.383 kb on + strand, within EX31_RS01835at 395.389 kb on - strand, within EX31_RS01835at 395.389 kb on - strand, within EX31_RS01835at 395.527 kb on - strand, within EX31_RS01835at 395.613 kb on - strandat 395.663 kb on - strandat 395.683 kb on - strandat 395.683 kb on - strandat 395.683 kb on - strandat 395.724 kb on + strandat 395.724 kb on + strandat 395.726 kb on + strandat 395.726 kb on + strandat 395.726 kb on + strandat 395.727 kb on - strandat 395.727 kb on - strandat 395.745 kb on - strandat 395.771 kb on + strandat 395.772 kb on - strandat 395.774 kb on + strandat 395.798 kb on + strandat 395.799 kb on - strandat 395.821 kb on - strandat 395.834 kb on - strandat 395.853 kb on - strandat 395.853 kb on - strandat 395.884 kb on + strandat 395.884 kb on + strandat 395.886 kb on + strandat 395.887 kb on - strandat 395.887 kb on - strandat 395.893 kb on + strandat 395.906 kb on + strandat 395.906 kb on + strandat 395.907 kb on - strandat 395.917 kb on + strandat 395.917 kb on + strandat 395.917 kb on + strandat 395.917 kb on + strandat 395.918 kb on - strandat 395.918 kb on - strandat 395.918 kb on - strandat 395.918 kb on - strandat 395.918 kb on - strandat 395.918 kb on - strandat 395.918 kb on - strandat 395.992 kb on - strandat 396.043 kb on + strandat 396.093 kb on + strandat 396.180 kb on + strandat 396.183 kb on + strandat 396.184 kb on - strandat 396.184 kb on - strandat 396.184 kb on - strandat 396.187 kb on + strandat 396.205 kb on - strandat 396.205 kb on - strandat 396.205 kb on - strandat 396.207 kb on - strandat 396.235 kb on - strandat 396.235 kb on - strandat 396.235 kb on - strandat 396.298 kb on - strand, within EX31_RS01840at 396.306 kb on + strand, within EX31_RS01840at 396.311 kb on + strand, within EX31_RS01840at 396.311 kb on + strand, within EX31_RS01840at 396.311 kb on + strand, within EX31_RS01840at 396.311 kb on + strand, within EX31_RS01840at 396.620 kb on + strand, within EX31_RS01840

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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393,650 - EX31_RS01830 0.64 +0.3
393,686 - EX31_RS01830 0.66 -0.6
393,727 - EX31_RS01830 0.68 +0.7
393,748 + EX31_RS01830 0.69 -0.4
393,748 + EX31_RS01830 0.69 +0.5
393,749 - EX31_RS01830 0.69 +1.3
393,796 + EX31_RS01830 0.71 +0.4
393,797 - EX31_RS01830 0.71 +0.5
393,802 + EX31_RS01830 0.71 -0.6
393,897 - EX31_RS01830 0.76 +0.1
393,897 - EX31_RS01830 0.76 -0.7
393,897 - EX31_RS01830 0.76 +1.0
394,000 + EX31_RS01830 0.80 +0.8
394,001 - EX31_RS01830 0.81 +0.2
394,023 - EX31_RS01830 0.82 +1.3
394,023 - EX31_RS01830 0.82 -0.7
394,067 - EX31_RS01830 0.84 +1.1
394,067 - EX31_RS01830 0.84 +0.6
394,069 - EX31_RS01830 0.84 -0.1
394,069 - EX31_RS01830 0.84 +0.0
394,178 - EX31_RS01830 0.89 +0.1
394,180 + EX31_RS01830 0.89 -1.4
394,181 - EX31_RS01830 0.89 +1.1
394,315 - +0.6
394,422 - +0.6
394,463 + +1.0
394,512 - +0.7
394,514 - +0.1
394,514 - -0.8
394,557 - -0.7
394,669 - -0.7
394,669 - +0.8
394,669 - +0.3
394,728 - EX31_RS01835 0.15 -0.6
394,728 - EX31_RS01835 0.15 +1.0
394,728 - EX31_RS01835 0.15 +0.5
394,761 + EX31_RS01835 0.18 -0.5
394,839 + EX31_RS01835 0.24 +0.0
394,839 + EX31_RS01835 0.24 +1.0
394,840 - EX31_RS01835 0.25 +0.3
394,873 + EX31_RS01835 0.27 -0.2
394,874 - EX31_RS01835 0.28 -0.1
394,885 + EX31_RS01835 0.29 +0.3
394,976 - EX31_RS01835 0.37 -0.7
395,041 - EX31_RS01835 0.42 +0.0
395,275 - EX31_RS01835 0.63 +1.2
395,278 + EX31_RS01835 0.63 +0.3
395,278 + EX31_RS01835 0.63 +1.0
395,279 - EX31_RS01835 0.64 +0.3
395,279 - EX31_RS01835 0.64 +0.6
395,298 - EX31_RS01835 0.65 +0.4
395,298 - EX31_RS01835 0.65 +0.6
395,332 - EX31_RS01835 0.68 +0.1
395,332 - EX31_RS01835 0.68 +0.6
395,332 - EX31_RS01835 0.68 -0.3
395,332 - EX31_RS01835 0.68 -0.2
395,383 + EX31_RS01835 0.73 +1.0
395,389 - EX31_RS01835 0.73 +0.9
395,389 - EX31_RS01835 0.73 -1.1
395,527 - EX31_RS01835 0.86 +0.3
395,613 - +0.1
395,663 - -0.0
395,683 - -0.5
395,683 - +0.7
395,683 - -0.2
395,724 + -0.5
395,724 + -0.2
395,726 + +0.2
395,726 + +0.7
395,726 + -0.3
395,727 - -2.0
395,727 - +1.1
395,745 - -1.3
395,771 + +0.6
395,772 - -0.3
395,774 + -0.6
395,798 + -1.9
395,799 - -1.7
395,821 - +0.3
395,834 - +0.4
395,853 - +0.5
395,853 - +0.0
395,884 + +0.8
395,884 + +0.6
395,886 + -1.0
395,887 - +0.3
395,887 - -2.3
395,893 + +0.6
395,906 + +0.4
395,906 + -0.6
395,907 - -0.3
395,917 + +0.1
395,917 + -0.3
395,917 + +0.1
395,917 + +1.3
395,918 - -1.2
395,918 - +0.7
395,918 - -2.3
395,918 - +0.1
395,918 - +1.0
395,918 - -0.1
395,918 - +0.9
395,992 - -1.0
396,043 + +0.8
396,093 + +0.9
396,180 + +0.7
396,183 + -1.7
396,184 - -1.1
396,184 - +0.7
396,184 - -0.2
396,187 + +1.6
396,205 - -0.2
396,205 - +0.9
396,205 - -0.2
396,207 - +0.2
396,235 - -0.2
396,235 - +0.9
396,235 - -1.1
396,298 - EX31_RS01840 0.13 -0.8
396,306 + EX31_RS01840 0.14 +1.2
396,311 + EX31_RS01840 0.14 -2.0
396,311 + EX31_RS01840 0.14 +0.6
396,311 + EX31_RS01840 0.14 +1.1
396,311 + EX31_RS01840 0.14 -0.3
396,620 + EX31_RS01840 0.34 +0.0

Or see this region's nucleotide sequence