Strain Fitness in Rahnella sp. WP5 around EX31_RS01455

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01450 and EX31_RS01455 are separated by 32 nucleotidesEX31_RS01455 and EX31_RS01460 are separated by 122 nucleotides EX31_RS01450: EX31_RS01450 - hypothetical protein, at 325,657 to 327,060 _RS01450 EX31_RS01455: EX31_RS01455 - alpha-amylase, at 327,093 to 328,574 _RS01455 EX31_RS01460: EX31_RS01460 - glycine betaine/L-proline transporter ProP, at 328,697 to 330,199 _RS01460 Position (kb) 327 328 329Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 326.186 kb on + strand, within EX31_RS01450at 326.186 kb on + strand, within EX31_RS01450at 326.186 kb on + strand, within EX31_RS01450at 326.186 kb on + strand, within EX31_RS01450at 326.187 kb on - strand, within EX31_RS01450at 326.204 kb on + strand, within EX31_RS01450at 326.204 kb on + strand, within EX31_RS01450at 326.205 kb on - strand, within EX31_RS01450at 326.207 kb on - strand, within EX31_RS01450at 326.238 kb on + strand, within EX31_RS01450at 326.284 kb on + strand, within EX31_RS01450at 326.284 kb on + strand, within EX31_RS01450at 326.284 kb on + strand, within EX31_RS01450at 326.351 kb on + strand, within EX31_RS01450at 326.351 kb on + strand, within EX31_RS01450at 326.352 kb on - strand, within EX31_RS01450at 326.359 kb on + strand, within EX31_RS01450at 326.359 kb on + strand, within EX31_RS01450at 326.491 kb on + strand, within EX31_RS01450at 326.492 kb on - strand, within EX31_RS01450at 326.492 kb on - strand, within EX31_RS01450at 326.492 kb on - strand, within EX31_RS01450at 326.504 kb on + strand, within EX31_RS01450at 326.513 kb on - strand, within EX31_RS01450at 326.562 kb on - strand, within EX31_RS01450at 326.677 kb on + strand, within EX31_RS01450at 326.677 kb on + strand, within EX31_RS01450at 326.677 kb on + strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.678 kb on - strand, within EX31_RS01450at 326.727 kb on + strand, within EX31_RS01450at 326.728 kb on - strand, within EX31_RS01450at 326.728 kb on - strand, within EX31_RS01450at 326.775 kb on + strand, within EX31_RS01450at 326.775 kb on + strand, within EX31_RS01450at 326.786 kb on + strand, within EX31_RS01450at 326.786 kb on + strand, within EX31_RS01450at 326.786 kb on + strand, within EX31_RS01450at 326.811 kb on + strand, within EX31_RS01450at 326.829 kb on + strand, within EX31_RS01450at 326.829 kb on + strand, within EX31_RS01450at 326.829 kb on + strand, within EX31_RS01450at 326.829 kb on + strand, within EX31_RS01450at 326.829 kb on + strand, within EX31_RS01450at 326.830 kb on - strand, within EX31_RS01450at 326.851 kb on + strand, within EX31_RS01450at 326.851 kb on + strand, within EX31_RS01450at 326.851 kb on + strand, within EX31_RS01450at 326.852 kb on - strand, within EX31_RS01450at 326.852 kb on - strand, within EX31_RS01450at 326.852 kb on - strand, within EX31_RS01450at 326.858 kb on + strand, within EX31_RS01450at 326.941 kb on - strandat 327.075 kb on - strandat 327.167 kb on + strandat 327.168 kb on - strandat 327.168 kb on - strandat 327.421 kb on + strand, within EX31_RS01455at 327.480 kb on + strand, within EX31_RS01455at 327.481 kb on - strand, within EX31_RS01455at 327.481 kb on - strand, within EX31_RS01455at 327.568 kb on - strand, within EX31_RS01455at 327.746 kb on - strand, within EX31_RS01455at 327.746 kb on - strand, within EX31_RS01455at 327.746 kb on - strand, within EX31_RS01455at 327.778 kb on + strand, within EX31_RS01455at 327.793 kb on + strand, within EX31_RS01455at 327.793 kb on + strand, within EX31_RS01455at 327.794 kb on - strand, within EX31_RS01455at 327.821 kb on + strand, within EX31_RS01455at 327.822 kb on - strand, within EX31_RS01455at 327.923 kb on - strand, within EX31_RS01455at 327.985 kb on + strand, within EX31_RS01455at 328.259 kb on + strand, within EX31_RS01455at 328.260 kb on - strand, within EX31_RS01455at 328.295 kb on + strand, within EX31_RS01455at 328.296 kb on - strand, within EX31_RS01455at 328.326 kb on + strand, within EX31_RS01455at 328.327 kb on - strand, within EX31_RS01455at 328.400 kb on - strand, within EX31_RS01455at 328.400 kb on - strand, within EX31_RS01455at 328.400 kb on - strand, within EX31_RS01455at 328.400 kb on - strand, within EX31_RS01455at 328.400 kb on - strand, within EX31_RS01455at 328.408 kb on + strand, within EX31_RS01455at 328.441 kb on + strandat 328.442 kb on - strandat 328.442 kb on - strandat 328.442 kb on - strandat 328.538 kb on - strandat 328.538 kb on - strandat 328.538 kb on - strandat 328.563 kb on - strandat 328.609 kb on + strandat 328.610 kb on - strandat 328.886 kb on - strand, within EX31_RS01460at 328.930 kb on - strand, within EX31_RS01460at 328.930 kb on - strand, within EX31_RS01460at 328.930 kb on - strand, within EX31_RS01460at 328.933 kb on - strand, within EX31_RS01460at 328.944 kb on + strand, within EX31_RS01460at 328.944 kb on + strand, within EX31_RS01460at 328.944 kb on + strand, within EX31_RS01460at 328.945 kb on - strand, within EX31_RS01460at 328.945 kb on - strand, within EX31_RS01460at 328.945 kb on - strand, within EX31_RS01460at 328.945 kb on - strand, within EX31_RS01460at 328.945 kb on - strand, within EX31_RS01460at 329.048 kb on - strand, within EX31_RS01460at 329.048 kb on - strand, within EX31_RS01460at 329.048 kb on - strand, within EX31_RS01460at 329.048 kb on - strand, within EX31_RS01460at 329.048 kb on - strand, within EX31_RS01460at 329.144 kb on + strand, within EX31_RS01460at 329.224 kb on + strand, within EX31_RS01460at 329.265 kb on - strand, within EX31_RS01460at 329.322 kb on + strand, within EX31_RS01460at 329.322 kb on + strand, within EX31_RS01460at 329.343 kb on + strand, within EX31_RS01460at 329.344 kb on - strand, within EX31_RS01460at 329.344 kb on - strand, within EX31_RS01460at 329.355 kb on + strand, within EX31_RS01460at 329.356 kb on - strand, within EX31_RS01460at 329.356 kb on - strand, within EX31_RS01460at 329.370 kb on + strand, within EX31_RS01460at 329.370 kb on + strand, within EX31_RS01460at 329.370 kb on + strand, within EX31_RS01460at 329.370 kb on + strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.374 kb on - strand, within EX31_RS01460at 329.550 kb on + strand, within EX31_RS01460at 329.550 kb on + strand, within EX31_RS01460

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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326,186 + EX31_RS01450 0.38 +0.1
326,186 + EX31_RS01450 0.38 +0.1
326,186 + EX31_RS01450 0.38 -0.2
326,186 + EX31_RS01450 0.38 +0.1
326,187 - EX31_RS01450 0.38 +0.8
326,204 + EX31_RS01450 0.39 +0.6
326,204 + EX31_RS01450 0.39 -2.9
326,205 - EX31_RS01450 0.39 +1.6
326,207 - EX31_RS01450 0.39 -0.1
326,238 + EX31_RS01450 0.41 +0.5
326,284 + EX31_RS01450 0.45 -0.0
326,284 + EX31_RS01450 0.45 -0.1
326,284 + EX31_RS01450 0.45 +0.4
326,351 + EX31_RS01450 0.49 +0.0
326,351 + EX31_RS01450 0.49 -1.7
326,352 - EX31_RS01450 0.50 -0.8
326,359 + EX31_RS01450 0.50 +0.3
326,359 + EX31_RS01450 0.50 -0.6
326,491 + EX31_RS01450 0.59 -0.4
326,492 - EX31_RS01450 0.59 -0.3
326,492 - EX31_RS01450 0.59 +1.9
326,492 - EX31_RS01450 0.59 +0.4
326,504 + EX31_RS01450 0.60 -1.3
326,513 - EX31_RS01450 0.61 +0.1
326,562 - EX31_RS01450 0.64 +0.0
326,677 + EX31_RS01450 0.73 -0.6
326,677 + EX31_RS01450 0.73 +1.7
326,677 + EX31_RS01450 0.73 -0.7
326,678 - EX31_RS01450 0.73 -0.6
326,678 - EX31_RS01450 0.73 +1.3
326,678 - EX31_RS01450 0.73 +1.2
326,678 - EX31_RS01450 0.73 -1.6
326,678 - EX31_RS01450 0.73 +1.2
326,678 - EX31_RS01450 0.73 +1.0
326,678 - EX31_RS01450 0.73 -0.7
326,727 + EX31_RS01450 0.76 +0.9
326,728 - EX31_RS01450 0.76 -0.5
326,728 - EX31_RS01450 0.76 +0.9
326,775 + EX31_RS01450 0.80 -1.1
326,775 + EX31_RS01450 0.80 -0.4
326,786 + EX31_RS01450 0.80 -0.4
326,786 + EX31_RS01450 0.80 -0.4
326,786 + EX31_RS01450 0.80 +0.3
326,811 + EX31_RS01450 0.82 +0.2
326,829 + EX31_RS01450 0.83 +0.4
326,829 + EX31_RS01450 0.83 +0.4
326,829 + EX31_RS01450 0.83 +1.3
326,829 + EX31_RS01450 0.83 +0.9
326,829 + EX31_RS01450 0.83 +0.0
326,830 - EX31_RS01450 0.84 +0.7
326,851 + EX31_RS01450 0.85 -0.2
326,851 + EX31_RS01450 0.85 -0.9
326,851 + EX31_RS01450 0.85 -0.1
326,852 - EX31_RS01450 0.85 +0.2
326,852 - EX31_RS01450 0.85 -1.2
326,852 - EX31_RS01450 0.85 -0.1
326,858 + EX31_RS01450 0.86 -0.7
326,941 - -0.0
327,075 - +1.7
327,167 + -0.2
327,168 - +0.5
327,168 - -0.8
327,421 + EX31_RS01455 0.22 -2.6
327,480 + EX31_RS01455 0.26 -0.2
327,481 - EX31_RS01455 0.26 -0.8
327,481 - EX31_RS01455 0.26 -1.1
327,568 - EX31_RS01455 0.32 +0.4
327,746 - EX31_RS01455 0.44 +0.5
327,746 - EX31_RS01455 0.44 +0.0
327,746 - EX31_RS01455 0.44 +0.8
327,778 + EX31_RS01455 0.46 +0.6
327,793 + EX31_RS01455 0.47 -0.9
327,793 + EX31_RS01455 0.47 -0.8
327,794 - EX31_RS01455 0.47 +0.2
327,821 + EX31_RS01455 0.49 +0.1
327,822 - EX31_RS01455 0.49 -0.0
327,923 - EX31_RS01455 0.56 -0.4
327,985 + EX31_RS01455 0.60 -0.6
328,259 + EX31_RS01455 0.79 +0.1
328,260 - EX31_RS01455 0.79 +0.1
328,295 + EX31_RS01455 0.81 -0.1
328,296 - EX31_RS01455 0.81 -0.0
328,326 + EX31_RS01455 0.83 -0.6
328,327 - EX31_RS01455 0.83 +1.5
328,400 - EX31_RS01455 0.88 +0.1
328,400 - EX31_RS01455 0.88 -0.0
328,400 - EX31_RS01455 0.88 +1.0
328,400 - EX31_RS01455 0.88 -1.6
328,400 - EX31_RS01455 0.88 -1.7
328,408 + EX31_RS01455 0.89 -0.0
328,441 + -0.6
328,442 - -0.8
328,442 - -2.3
328,442 - +0.5
328,538 - +1.2
328,538 - +1.0
328,538 - +0.8
328,563 - -0.7
328,609 + +0.6
328,610 - -0.1
328,886 - EX31_RS01460 0.13 +0.4
328,930 - EX31_RS01460 0.16 -1.0
328,930 - EX31_RS01460 0.16 +0.5
328,930 - EX31_RS01460 0.16 -0.3
328,933 - EX31_RS01460 0.16 +0.4
328,944 + EX31_RS01460 0.16 -0.5
328,944 + EX31_RS01460 0.16 +0.2
328,944 + EX31_RS01460 0.16 +0.3
328,945 - EX31_RS01460 0.17 +0.8
328,945 - EX31_RS01460 0.17 -0.5
328,945 - EX31_RS01460 0.17 +0.8
328,945 - EX31_RS01460 0.17 -1.1
328,945 - EX31_RS01460 0.17 +1.0
329,048 - EX31_RS01460 0.23 -2.0
329,048 - EX31_RS01460 0.23 -1.4
329,048 - EX31_RS01460 0.23 -1.6
329,048 - EX31_RS01460 0.23 +0.5
329,048 - EX31_RS01460 0.23 -0.5
329,144 + EX31_RS01460 0.30 -0.0
329,224 + EX31_RS01460 0.35 +0.1
329,265 - EX31_RS01460 0.38 +0.4
329,322 + EX31_RS01460 0.42 -1.8
329,322 + EX31_RS01460 0.42 -0.5
329,343 + EX31_RS01460 0.43 -1.4
329,344 - EX31_RS01460 0.43 +1.0
329,344 - EX31_RS01460 0.43 +1.1
329,355 + EX31_RS01460 0.44 -2.6
329,356 - EX31_RS01460 0.44 +0.7
329,356 - EX31_RS01460 0.44 +0.0
329,370 + EX31_RS01460 0.45 -0.9
329,370 + EX31_RS01460 0.45 -0.5
329,370 + EX31_RS01460 0.45 +0.6
329,370 + EX31_RS01460 0.45 +0.3
329,371 - EX31_RS01460 0.45 +0.6
329,371 - EX31_RS01460 0.45 +0.1
329,371 - EX31_RS01460 0.45 +0.1
329,371 - EX31_RS01460 0.45 -2.0
329,371 - EX31_RS01460 0.45 -2.1
329,371 - EX31_RS01460 0.45 +0.2
329,374 - EX31_RS01460 0.45 +0.3
329,550 + EX31_RS01460 0.57 +0.3
329,550 + EX31_RS01460 0.57 +0.2

Or see this region's nucleotide sequence