Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00480 and EX31_RS00485 overlap by 8 nucleotides EX31_RS00485 and EX31_RS00490 overlap by 4 nucleotides EX31_RS00490 and EX31_RS00495 are separated by 26 nucleotides
EX31_RS00480: EX31_RS00480 - MCE family protein, at 105,937 to 107,532
_RS00480
EX31_RS00485: EX31_RS00485 - paraquat-inducible protein A, at 107,525 to 108,148
_RS00485
EX31_RS00490: EX31_RS00490 - paraquat-inducible protein A, at 108,145 to 108,762
_RS00490
EX31_RS00495: EX31_RS00495 - DUF3313 domain-containing protein, at 108,789 to 109,451
_RS00495
Position (kb) 107
108
109 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 106.722 kb on + strand, within EX31_RS00480 at 106.722 kb on + strand, within EX31_RS00480 at 106.723 kb on - strand, within EX31_RS00480 at 106.723 kb on - strand, within EX31_RS00480 at 106.723 kb on - strand, within EX31_RS00480 at 106.723 kb on - strand, within EX31_RS00480 at 106.723 kb on - strand, within EX31_RS00480 at 106.723 kb on - strand, within EX31_RS00480 at 106.724 kb on + strand, within EX31_RS00480 at 106.726 kb on + strand, within EX31_RS00480 at 106.726 kb on + strand, within EX31_RS00480 at 106.726 kb on + strand, within EX31_RS00480 at 106.726 kb on + strand, within EX31_RS00480 at 106.727 kb on - strand, within EX31_RS00480 at 106.727 kb on - strand, within EX31_RS00480 at 106.727 kb on - strand, within EX31_RS00480 at 106.727 kb on - strand, within EX31_RS00480 at 106.727 kb on - strand, within EX31_RS00480 at 106.727 kb on - strand, within EX31_RS00480 at 106.727 kb on - strand, within EX31_RS00480 at 106.727 kb on - strand, within EX31_RS00480 at 106.727 kb on - strand, within EX31_RS00480 at 106.849 kb on + strand, within EX31_RS00480 at 106.850 kb on - strand, within EX31_RS00480 at 106.921 kb on + strand, within EX31_RS00480 at 106.921 kb on + strand, within EX31_RS00480 at 106.921 kb on + strand, within EX31_RS00480 at 106.922 kb on - strand, within EX31_RS00480 at 106.994 kb on + strand, within EX31_RS00480 at 106.997 kb on + strand, within EX31_RS00480 at 106.997 kb on + strand, within EX31_RS00480 at 107.145 kb on + strand, within EX31_RS00480 at 107.147 kb on + strand, within EX31_RS00480 at 107.147 kb on + strand, within EX31_RS00480 at 107.147 kb on + strand, within EX31_RS00480 at 107.147 kb on + strand, within EX31_RS00480 at 107.147 kb on + strand, within EX31_RS00480 at 107.148 kb on - strand, within EX31_RS00480 at 107.148 kb on - strand, within EX31_RS00480 at 107.148 kb on - strand, within EX31_RS00480 at 107.362 kb on + strand, within EX31_RS00480 at 107.362 kb on + strand, within EX31_RS00480 at 107.362 kb on + strand, within EX31_RS00480 at 107.385 kb on + strand at 107.385 kb on + strand at 107.386 kb on - strand at 107.422 kb on + strand at 107.533 kb on + strand at 107.534 kb on - strand at 107.859 kb on + strand, within EX31_RS00485 at 107.859 kb on + strand, within EX31_RS00485 at 107.859 kb on + strand, within EX31_RS00485 at 107.859 kb on + strand, within EX31_RS00485 at 107.860 kb on - strand, within EX31_RS00485 at 107.860 kb on - strand, within EX31_RS00485 at 107.934 kb on + strand, within EX31_RS00485 at 107.934 kb on + strand, within EX31_RS00485 at 107.934 kb on + strand, within EX31_RS00485 at 107.934 kb on + strand, within EX31_RS00485 at 107.934 kb on + strand, within EX31_RS00485 at 107.934 kb on + strand, within EX31_RS00485 at 107.935 kb on - strand, within EX31_RS00485 at 107.948 kb on + strand, within EX31_RS00485 at 107.964 kb on + strand, within EX31_RS00485 at 107.964 kb on + strand, within EX31_RS00485 at 107.965 kb on - strand, within EX31_RS00485 at 108.218 kb on - strand, within EX31_RS00490 at 108.421 kb on + strand, within EX31_RS00490 at 108.488 kb on + strand, within EX31_RS00490 at 108.488 kb on + strand, within EX31_RS00490 at 108.489 kb on - strand, within EX31_RS00490 at 108.489 kb on - strand, within EX31_RS00490 at 108.713 kb on + strand at 108.714 kb on - strand at 108.714 kb on - strand at 108.791 kb on - strand at 108.902 kb on + strand, within EX31_RS00495 at 108.904 kb on + strand, within EX31_RS00495 at 108.904 kb on + strand, within EX31_RS00495 at 108.904 kb on + strand, within EX31_RS00495 at 108.904 kb on + strand, within EX31_RS00495 at 108.904 kb on + strand, within EX31_RS00495 at 108.904 kb on + strand, within EX31_RS00495 at 108.904 kb on + strand, within EX31_RS00495 at 108.905 kb on - strand, within EX31_RS00495 at 108.905 kb on - strand, within EX31_RS00495 at 108.905 kb on - strand, within EX31_RS00495 at 108.905 kb on - strand, within EX31_RS00495 at 108.938 kb on - strand, within EX31_RS00495 at 108.953 kb on - strand, within EX31_RS00495 at 108.953 kb on - strand, within EX31_RS00495 at 109.009 kb on + strand, within EX31_RS00495 at 109.010 kb on - strand, within EX31_RS00495 at 109.095 kb on + strand, within EX31_RS00495 at 109.095 kb on + strand, within EX31_RS00495 at 109.095 kb on + strand, within EX31_RS00495 at 109.095 kb on + strand, within EX31_RS00495 at 109.095 kb on + strand, within EX31_RS00495 at 109.095 kb on + strand, within EX31_RS00495 at 109.095 kb on + strand, within EX31_RS00495 at 109.095 kb on + strand, within EX31_RS00495 at 109.095 kb on + strand, within EX31_RS00495 at 109.096 kb on - strand, within EX31_RS00495 at 109.096 kb on - strand, within EX31_RS00495 at 109.096 kb on - strand, within EX31_RS00495 at 109.096 kb on - strand, within EX31_RS00495 at 109.096 kb on - strand, within EX31_RS00495 at 109.096 kb on - strand, within EX31_RS00495 at 109.096 kb on - strand, within EX31_RS00495 at 109.112 kb on + strand, within EX31_RS00495
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 106,722 + EX31_RS00480 0.49 +0.5 106,722 + EX31_RS00480 0.49 -1.2 106,723 - EX31_RS00480 0.49 +0.7 106,723 - EX31_RS00480 0.49 +0.0 106,723 - EX31_RS00480 0.49 -0.1 106,723 - EX31_RS00480 0.49 -0.1 106,723 - EX31_RS00480 0.49 +0.7 106,723 - EX31_RS00480 0.49 +0.1 106,724 + EX31_RS00480 0.49 +0.3 106,726 + EX31_RS00480 0.49 -0.9 106,726 + EX31_RS00480 0.49 -0.4 106,726 + EX31_RS00480 0.49 +1.2 106,726 + EX31_RS00480 0.49 -1.1 106,727 - EX31_RS00480 0.49 +0.4 106,727 - EX31_RS00480 0.49 -1.4 106,727 - EX31_RS00480 0.49 -0.6 106,727 - EX31_RS00480 0.49 -3.7 106,727 - EX31_RS00480 0.49 +0.2 106,727 - EX31_RS00480 0.49 +0.5 106,727 - EX31_RS00480 0.49 +0.1 106,727 - EX31_RS00480 0.49 -0.9 106,727 - EX31_RS00480 0.49 -0.7 106,849 + EX31_RS00480 0.57 -0.3 106,850 - EX31_RS00480 0.57 -0.5 106,921 + EX31_RS00480 0.62 -2.0 106,921 + EX31_RS00480 0.62 -0.3 106,921 + EX31_RS00480 0.62 +1.5 106,922 - EX31_RS00480 0.62 +0.8 106,994 + EX31_RS00480 0.66 -1.3 106,997 + EX31_RS00480 0.66 -0.0 106,997 + EX31_RS00480 0.66 +0.9 107,145 + EX31_RS00480 0.76 +2.3 107,147 + EX31_RS00480 0.76 +0.0 107,147 + EX31_RS00480 0.76 -0.5 107,147 + EX31_RS00480 0.76 +0.3 107,147 + EX31_RS00480 0.76 +0.3 107,147 + EX31_RS00480 0.76 -0.5 107,148 - EX31_RS00480 0.76 -0.8 107,148 - EX31_RS00480 0.76 -0.3 107,148 - EX31_RS00480 0.76 +0.2 107,362 + EX31_RS00480 0.89 -0.5 107,362 + EX31_RS00480 0.89 +1.0 107,362 + EX31_RS00480 0.89 +0.5 107,385 + -0.1 107,385 + -0.1 107,386 - +0.6 107,422 + +0.3 107,533 + -0.7 107,534 - +0.2 107,859 + EX31_RS00485 0.54 -0.2 107,859 + EX31_RS00485 0.54 -0.3 107,859 + EX31_RS00485 0.54 -0.5 107,859 + EX31_RS00485 0.54 +0.4 107,860 - EX31_RS00485 0.54 +0.4 107,860 - EX31_RS00485 0.54 +0.6 107,934 + EX31_RS00485 0.66 -1.4 107,934 + EX31_RS00485 0.66 +0.9 107,934 + EX31_RS00485 0.66 -1.0 107,934 + EX31_RS00485 0.66 -0.6 107,934 + EX31_RS00485 0.66 -0.8 107,934 + EX31_RS00485 0.66 -0.9 107,935 - EX31_RS00485 0.66 -1.2 107,948 + EX31_RS00485 0.68 -1.6 107,964 + EX31_RS00485 0.70 -1.2 107,964 + EX31_RS00485 0.70 +0.6 107,965 - EX31_RS00485 0.71 -0.3 108,218 - EX31_RS00490 0.12 -0.4 108,421 + EX31_RS00490 0.45 +0.3 108,488 + EX31_RS00490 0.56 +0.3 108,488 + EX31_RS00490 0.56 -1.1 108,489 - EX31_RS00490 0.56 -0.2 108,489 - EX31_RS00490 0.56 +0.2 108,713 + +0.2 108,714 - +1.6 108,714 - -0.8 108,791 - -0.3 108,902 + EX31_RS00495 0.17 -1.4 108,904 + EX31_RS00495 0.17 -0.3 108,904 + EX31_RS00495 0.17 -0.8 108,904 + EX31_RS00495 0.17 -2.0 108,904 + EX31_RS00495 0.17 +0.3 108,904 + EX31_RS00495 0.17 +0.4 108,904 + EX31_RS00495 0.17 +0.5 108,904 + EX31_RS00495 0.17 -0.4 108,905 - EX31_RS00495 0.17 +0.3 108,905 - EX31_RS00495 0.17 +1.4 108,905 - EX31_RS00495 0.17 +0.7 108,905 - EX31_RS00495 0.17 -0.0 108,938 - EX31_RS00495 0.22 -0.4 108,953 - EX31_RS00495 0.25 -0.7 108,953 - EX31_RS00495 0.25 -0.6 109,009 + EX31_RS00495 0.33 +0.1 109,010 - EX31_RS00495 0.33 -0.0 109,095 + EX31_RS00495 0.46 -0.6 109,095 + EX31_RS00495 0.46 -0.7 109,095 + EX31_RS00495 0.46 -2.2 109,095 + EX31_RS00495 0.46 +0.1 109,095 + EX31_RS00495 0.46 +0.5 109,095 + EX31_RS00495 0.46 -0.5 109,095 + EX31_RS00495 0.46 -0.1 109,095 + EX31_RS00495 0.46 -0.3 109,095 + EX31_RS00495 0.46 +0.9 109,096 - EX31_RS00495 0.46 -1.3 109,096 - EX31_RS00495 0.46 +0.9 109,096 - EX31_RS00495 0.46 +1.5 109,096 - EX31_RS00495 0.46 +0.1 109,096 - EX31_RS00495 0.46 +0.2 109,096 - EX31_RS00495 0.46 -1.9 109,096 - EX31_RS00495 0.46 +0.9 109,112 + EX31_RS00495 0.49 -0.7
Or see this region's nucleotide sequence