Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00465 and EX31_RS00470 are separated by 126 nucleotides EX31_RS00470 and EX31_RS00475 are separated by 271 nucleotides EX31_RS00475 and EX31_RS00480 overlap by 4 nucleotides
EX31_RS00465: EX31_RS00465 - efflux RND transporter periplasmic adaptor subunit, at 103,330 to 104,469
_RS00465
EX31_RS00470: EX31_RS00470 - PadR family transcriptional regulator, at 104,596 to 105,087
_RS00470
EX31_RS00475: EX31_RS00475 - membrane integrity-associated transporter subunit PqiC, at 105,359 to 105,940
_RS00475
EX31_RS00480: EX31_RS00480 - MCE family protein, at 105,937 to 107,532
_RS00480
Position (kb) 104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 103.646 kb on - strand, within EX31_RS00465 at 103.780 kb on + strand, within EX31_RS00465 at 103.780 kb on + strand, within EX31_RS00465 at 103.780 kb on + strand, within EX31_RS00465 at 103.780 kb on + strand, within EX31_RS00465 at 103.780 kb on + strand, within EX31_RS00465 at 103.781 kb on - strand, within EX31_RS00465 at 103.781 kb on - strand, within EX31_RS00465 at 103.813 kb on - strand, within EX31_RS00465 at 103.856 kb on + strand, within EX31_RS00465 at 103.856 kb on + strand, within EX31_RS00465 at 103.857 kb on - strand, within EX31_RS00465 at 103.857 kb on - strand, within EX31_RS00465 at 103.857 kb on - strand, within EX31_RS00465 at 103.857 kb on - strand, within EX31_RS00465 at 104.181 kb on - strand, within EX31_RS00465 at 104.181 kb on - strand, within EX31_RS00465 at 104.181 kb on - strand, within EX31_RS00465 at 104.181 kb on - strand, within EX31_RS00465 at 104.191 kb on - strand, within EX31_RS00465 at 104.213 kb on + strand, within EX31_RS00465 at 104.268 kb on + strand, within EX31_RS00465 at 104.416 kb on - strand at 104.447 kb on - strand at 104.497 kb on + strand at 104.583 kb on + strand at 104.600 kb on - strand at 104.634 kb on - strand at 104.634 kb on - strand at 104.638 kb on - strand at 104.654 kb on - strand, within EX31_RS00470 at 104.817 kb on - strand, within EX31_RS00470 at 104.864 kb on - strand, within EX31_RS00470 at 104.898 kb on + strand, within EX31_RS00470 at 104.898 kb on + strand, within EX31_RS00470 at 104.939 kb on + strand, within EX31_RS00470 at 104.939 kb on + strand, within EX31_RS00470 at 104.939 kb on + strand, within EX31_RS00470 at 104.939 kb on + strand, within EX31_RS00470 at 104.940 kb on - strand, within EX31_RS00470 at 104.940 kb on - strand, within EX31_RS00470 at 104.940 kb on - strand, within EX31_RS00470 at 104.940 kb on - strand, within EX31_RS00470 at 104.949 kb on + strand, within EX31_RS00470 at 104.999 kb on - strand, within EX31_RS00470 at 105.064 kb on + strand at 105.125 kb on + strand at 105.126 kb on - strand at 105.127 kb on + strand at 105.335 kb on - strand at 105.335 kb on - strand at 105.335 kb on - strand at 105.436 kb on + strand, within EX31_RS00475 at 105.437 kb on - strand, within EX31_RS00475 at 105.602 kb on - strand, within EX31_RS00475 at 105.637 kb on + strand, within EX31_RS00475 at 105.637 kb on + strand, within EX31_RS00475 at 105.638 kb on - strand, within EX31_RS00475 at 105.742 kb on + strand, within EX31_RS00475 at 105.743 kb on - strand, within EX31_RS00475 at 105.746 kb on + strand, within EX31_RS00475 at 105.746 kb on + strand, within EX31_RS00475 at 105.747 kb on - strand, within EX31_RS00475 at 105.794 kb on + strand, within EX31_RS00475 at 105.794 kb on + strand, within EX31_RS00475 at 105.794 kb on + strand, within EX31_RS00475 at 105.795 kb on - strand, within EX31_RS00475 at 105.861 kb on + strand, within EX31_RS00475 at 105.861 kb on + strand, within EX31_RS00475 at 105.861 kb on + strand, within EX31_RS00475 at 105.861 kb on + strand, within EX31_RS00475 at 105.861 kb on + strand, within EX31_RS00475 at 105.862 kb on - strand, within EX31_RS00475 at 105.862 kb on - strand, within EX31_RS00475 at 105.864 kb on + strand, within EX31_RS00475 at 105.865 kb on - strand, within EX31_RS00475 at 105.865 kb on - strand, within EX31_RS00475 at 105.951 kb on + strand at 106.026 kb on - strand at 106.027 kb on + strand at 106.027 kb on + strand at 106.027 kb on + strand at 106.027 kb on + strand at 106.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 103,646 - EX31_RS00465 0.28 -0.9 103,780 + EX31_RS00465 0.39 +0.1 103,780 + EX31_RS00465 0.39 -0.5 103,780 + EX31_RS00465 0.39 +0.6 103,780 + EX31_RS00465 0.39 +0.5 103,780 + EX31_RS00465 0.39 +0.4 103,781 - EX31_RS00465 0.40 -1.1 103,781 - EX31_RS00465 0.40 +0.1 103,813 - EX31_RS00465 0.42 -0.8 103,856 + EX31_RS00465 0.46 -0.4 103,856 + EX31_RS00465 0.46 +0.4 103,857 - EX31_RS00465 0.46 +0.2 103,857 - EX31_RS00465 0.46 +0.5 103,857 - EX31_RS00465 0.46 -0.1 103,857 - EX31_RS00465 0.46 +0.4 104,181 - EX31_RS00465 0.75 +0.8 104,181 - EX31_RS00465 0.75 -1.3 104,181 - EX31_RS00465 0.75 -0.3 104,181 - EX31_RS00465 0.75 +0.8 104,191 - EX31_RS00465 0.76 +0.6 104,213 + EX31_RS00465 0.77 -1.7 104,268 + EX31_RS00465 0.82 +0.2 104,416 - -0.0 104,447 - +0.2 104,497 + -1.0 104,583 + -2.0 104,600 - -0.3 104,634 - -0.4 104,634 - +0.5 104,638 - +0.2 104,654 - EX31_RS00470 0.12 -2.2 104,817 - EX31_RS00470 0.45 -1.5 104,864 - EX31_RS00470 0.54 +1.5 104,898 + EX31_RS00470 0.61 -0.5 104,898 + EX31_RS00470 0.61 -0.9 104,939 + EX31_RS00470 0.70 +0.6 104,939 + EX31_RS00470 0.70 -2.8 104,939 + EX31_RS00470 0.70 -0.3 104,939 + EX31_RS00470 0.70 +0.8 104,940 - EX31_RS00470 0.70 -1.3 104,940 - EX31_RS00470 0.70 -1.1 104,940 - EX31_RS00470 0.70 -0.5 104,940 - EX31_RS00470 0.70 +0.7 104,949 + EX31_RS00470 0.72 -1.3 104,999 - EX31_RS00470 0.82 +0.7 105,064 + +0.1 105,125 + +1.1 105,126 - +0.4 105,127 + +0.4 105,335 - -1.4 105,335 - +0.4 105,335 - -0.6 105,436 + EX31_RS00475 0.13 +0.5 105,437 - EX31_RS00475 0.13 -0.5 105,602 - EX31_RS00475 0.42 -0.7 105,637 + EX31_RS00475 0.48 -0.2 105,637 + EX31_RS00475 0.48 +0.4 105,638 - EX31_RS00475 0.48 -0.3 105,742 + EX31_RS00475 0.66 +0.0 105,743 - EX31_RS00475 0.66 +0.9 105,746 + EX31_RS00475 0.66 +0.5 105,746 + EX31_RS00475 0.66 +0.1 105,747 - EX31_RS00475 0.67 +1.0 105,794 + EX31_RS00475 0.75 -0.5 105,794 + EX31_RS00475 0.75 -0.8 105,794 + EX31_RS00475 0.75 -0.9 105,795 - EX31_RS00475 0.75 -2.7 105,861 + EX31_RS00475 0.86 -1.2 105,861 + EX31_RS00475 0.86 +0.3 105,861 + EX31_RS00475 0.86 -1.5 105,861 + EX31_RS00475 0.86 -0.1 105,861 + EX31_RS00475 0.86 -2.2 105,862 - EX31_RS00475 0.86 -0.5 105,862 - EX31_RS00475 0.86 +0.2 105,864 + EX31_RS00475 0.87 +0.6 105,865 - EX31_RS00475 0.87 +0.6 105,865 - EX31_RS00475 0.87 -0.7 105,951 + -0.0 106,026 - -0.3 106,027 + -0.7 106,027 + -1.3 106,027 + +0.6 106,027 + +0.8 106,028 - -2.3
Or see this region's nucleotide sequence