Strain Fitness in Rahnella sp. WP5 around EX31_RS17045

Experiment: NL-CCM_agar

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM_agar
849	-		EX31_RS26065	0.44	+0.5
849	-		EX31_RS26065	0.44	-0.8
897	+		EX31_RS26065	0.89	+0.2
897	+		EX31_RS26065	0.89	-0.8
897	+		EX31_RS26065	0.89	-0.2
898	-				+0.6
898	-				-0.5
898	-				+0.3
898	-				+1.5
908	+				+0.6
909	-				-0.2
909	-				-0.3
909	-				-0.3
909	-				+0.4
959	+				-0.3
959	+				+1.3
984	+				-0.5
984	+				+0.4
984	+				-0.5
984	+				-0.7
985	-				+0.1
985	-				+1.6
985	-				-0.6
989	+				+0.7
989	+				-0.3
992	+				-0.3
992	+				-0.2
993	-				+0.1
993	-				+0.1
993	-				+0.0
1,005	+				+0.1
1,006	-				-0.1
1,006	-				+0.9
1,006	-				-0.8
1,009	+				+2.6
1,010	-				-0.4
1,018	+				+0.3
1,018	+				+0.5
1,018	+				-0.3
1,018	+				+0.4
1,019	-				-0.4
1,019	-				-0.2
1,019	-				+0.1
1,027	-				+0.1
1,047	+				-0.7
1,070	+		EX31_RS17045	0.17	+0.6
1,097	+		EX31_RS17045	0.25	-0.4
1,098	-		EX31_RS17045	0.26	+1.3
1,104	+		EX31_RS17045	0.28	-0.1
1,104	+		EX31_RS17045	0.28	+0.9
1,104	+		EX31_RS17045	0.28	-1.3
1,104	+		EX31_RS17045	0.28	+0.8
1,105	-		EX31_RS17045	0.28	+0.5
1,105	-		EX31_RS17045	0.28	+0.1
1,105	-		EX31_RS17045	0.28	+0.4
1,105	-		EX31_RS17045	0.28	+1.7
1,234	+		EX31_RS17045	0.69	-0.1
1,234	+		EX31_RS17045	0.69	+0.1
1,234	+		EX31_RS17045	0.69	+0.1
1,234	+		EX31_RS17045	0.69	+0.3
1,234	+		EX31_RS17045	0.69	+0.2
1,234	+		EX31_RS17045	0.69	+0.4
1,235	-		EX31_RS17045	0.69	+0.4
1,235	-		EX31_RS17045	0.69	+0.3
1,235	-		EX31_RS17045	0.69	+0.6
1,235	-		EX31_RS17045	0.69	+0.2
1,235	-		EX31_RS17045	0.69	+1.0
1,235	-		EX31_RS17045	0.69	+0.2
1,235	-		EX31_RS17045	0.69	+0.3
1,235	-		EX31_RS17045	0.69	+1.9
1,235	-		EX31_RS17045	0.69	+0.2
1,235	-		EX31_RS17045	0.69	-0.1
1,235	-		EX31_RS17045	0.69	-0.4
1,266	-		EX31_RS17045	0.79	-0.3
1,317	+				+0.4
1,318	-				+1.4
1,333	-				-1.0
1,333	-				+0.3
1,333	-				-0.5
1,333	-				+0.2
1,358	+				+0.2
1,358	+				+0.8
1,359	-				+0.2
1,359	-				+1.1
1,359	-				-0.5
1,359	-				-0.3
1,359	-				+1.0
1,367	+				+0.0
1,445	-		EX31_RS17050	0.24	-0.3
1,445	-		EX31_RS17050	0.24	+1.3
1,445	-		EX31_RS17050	0.24	-1.0
1,445	-		EX31_RS17050	0.24	+0.7
1,458	+		EX31_RS17050	0.27	+0.3
1,459	-		EX31_RS17050	0.27	+0.0
1,555	+		EX31_RS17050	0.47	-1.3
1,556	-		EX31_RS17050	0.47	-1.2
1,556	-		EX31_RS17050	0.47	-2.1
1,556	-		EX31_RS17050	0.47	+0.1
1,556	-		EX31_RS17050	0.47	-0.6
1,556	-		EX31_RS17050	0.47	+0.2
1,556	-		EX31_RS17050	0.47	+0.6
1,556	-		EX31_RS17050	0.47	+0.8
1,559	+		EX31_RS17050	0.48	-1.2
1,560	-		EX31_RS17050	0.48	-0.3
1,579	+		EX31_RS17050	0.52	-0.3
1,580	-		EX31_RS17050	0.53	-0.6
1,588	-		EX31_RS17050	0.54	+0.2
1,595	-		EX31_RS17050	0.56	-0.2
1,595	-		EX31_RS17050	0.56	-0.1
1,644	-		EX31_RS17050	0.66	-0.2
1,709	+		EX31_RS17050	0.80	+0.0
1,709	+		EX31_RS17050	0.80	+0.9
1,710	-		EX31_RS17050	0.80	+0.2
1,710	-		EX31_RS17050	0.80	-0.1
1,710	-		EX31_RS17050	0.80	+0.4
1,816	+				-1.4
1,816	+				-0.5
1,816	+				-0.3
1,817	-				+0.8
1,817	-				-0.6
1,817	-				-0.1
1,817	-				-0.6
1,817	-				-0.3
1,817	-				+1.6
1,817	-				-0.6
1,817	-				+1.0
1,817	-				-0.4
1,823	+				+0.8
1,824	-				+0.1
1,857	-				-1.0
1,857	-				-1.0
1,857	-				-0.7
1,866	+				+1.7
1,866	+				+0.7
1,866	+				-0.5
1,867	-				-0.6
1,867	-				+0.1
1,907	+		EX31_RS17055	0.13	-1.6
1,907	+		EX31_RS17055	0.13	-0.8
1,907	+		EX31_RS17055	0.13	-0.4
1,907	+		EX31_RS17055	0.13	+1.1
1,907	+		EX31_RS17055	0.13	-0.6
1,908	-		EX31_RS17055	0.13	-0.2
1,908	-		EX31_RS17055	0.13	-0.5
1,908	-		EX31_RS17055	0.13	+0.4
1,925	+		EX31_RS17055	0.15	+1.5
1,925	+		EX31_RS17055	0.15	+0.3
1,925	+		EX31_RS17055	0.15	-0.4
1,925	+		EX31_RS17055	0.15	+0.2
1,925	+		EX31_RS17055	0.15	+0.2
1,926	-		EX31_RS17055	0.15	-0.1
1,926	-		EX31_RS17055	0.15	-1.0
1,926	-		EX31_RS17055	0.15	+0.4
1,928	+		EX31_RS17055	0.16	-0.2
1,928	+		EX31_RS17055	0.16	-1.3
1,928	+		EX31_RS17055	0.16	+0.6
1,928	+		EX31_RS17055	0.16	-0.1
1,928	+		EX31_RS17055	0.16	+0.1
1,929	-		EX31_RS17055	0.16	-0.3
1,929	-		EX31_RS17055	0.16	+0.3
1,929	-		EX31_RS17055	0.16	-1.1
1,929	-		EX31_RS17055	0.16	+0.3
1,929	-		EX31_RS17055	0.16	-1.3
2,019	-		EX31_RS17055	0.28	+1.2
2,051	+		EX31_RS17055	0.33	-0.7
2,051	+		EX31_RS17055	0.33	-0.1
2,051	+		EX31_RS17055	0.33	-0.0
2,051	+		EX31_RS17055	0.33	+0.4
2,051	+		EX31_RS17055	0.33	-0.2
2,051	+		EX31_RS17055	0.33	-0.2
2,051	+		EX31_RS17055	0.33	-0.7
2,051	+		EX31_RS17055	0.33	-0.8
2,051	+		EX31_RS17055	0.33	+1.1
2,051	+		EX31_RS17055	0.33	+0.2
2,051	+		EX31_RS17055	0.33	+0.2
2,051	+		EX31_RS17055	0.33	+0.4
2,051	+		EX31_RS17055	0.33	+0.1
2,051	+		EX31_RS17055	0.33	+0.1
2,051	+		EX31_RS17055	0.33	+0.2
2,052	-		EX31_RS17055	0.33	+0.6
2,052	-		EX31_RS17055	0.33	+0.4
2,052	-		EX31_RS17055	0.33	-0.9
2,052	-		EX31_RS17055	0.33	+0.0
2,052	-		EX31_RS17055	0.33	+0.4
2,052	-		EX31_RS17055	0.33	-0.1
2,052	-		EX31_RS17055	0.33	-0.2
2,052	-		EX31_RS17055	0.33	+0.1
2,052	-		EX31_RS17055	0.33	-0.4
2,052	-		EX31_RS17055	0.33	-0.2
2,055	+		EX31_RS17055	0.33	+0.4
2,055	+		EX31_RS17055	0.33	-1.4
2,055	+		EX31_RS17055	0.33	+0.1
2,055	+		EX31_RS17055	0.33	-0.8
2,056	-		EX31_RS17055	0.33	-0.5
2,056	-		EX31_RS17055	0.33	-0.1
2,056	-		EX31_RS17055	0.33	+0.4
2,056	-		EX31_RS17055	0.33	+0.6
2,056	-		EX31_RS17055	0.33	-2.0
2,056	-		EX31_RS17055	0.33	+1.6
2,168	-		EX31_RS17055	0.49	-0.1
2,168	-		EX31_RS17055	0.49	+0.7
2,168	-		EX31_RS17055	0.49	-1.1
2,168	-		EX31_RS17055	0.49	+0.6
2,186	+		EX31_RS17055	0.52	-0.1
2,187	-		EX31_RS17055	0.52	+0.6
2,187	-		EX31_RS17055	0.52	+0.5
2,187	-		EX31_RS17055	0.52	-0.0
2,246	+		EX31_RS17055	0.60	-0.0
2,246	+		EX31_RS17055	0.60	+0.7
2,310	+		EX31_RS17055	0.69	-0.2
2,310	+		EX31_RS17055	0.69	+0.4
2,310	+		EX31_RS17055	0.69	+0.5
2,311	-		EX31_RS17055	0.69	-0.5
2,311	-		EX31_RS17055	0.69	+0.6
2,311	-		EX31_RS17055	0.69	-1.3
2,311	-		EX31_RS17055	0.69	-0.3
2,311	-		EX31_RS17055	0.69	-0.1
2,311	-		EX31_RS17055	0.69	+0.4