Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12110 and EX31_RS12115 are separated by 409 nucleotides EX31_RS12115 and EX31_RS12120 are separated by 268 nucleotides
EX31_RS12110: EX31_RS12110 - glutathione S-transferase, at 88,451 to 89,119
_RS12110
EX31_RS12115: EX31_RS12115 - NCS2 family permease, at 89,529 to 90,896
_RS12115
EX31_RS12120: EX31_RS12120 - Na+/H+ antiporter, at 91,165 to 92,814
_RS12120
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 88.664 kb on + strand, within EX31_RS12110 at 88.664 kb on + strand, within EX31_RS12110 at 88.664 kb on + strand, within EX31_RS12110 at 88.664 kb on + strand, within EX31_RS12110 at 88.679 kb on + strand, within EX31_RS12110 at 88.679 kb on + strand, within EX31_RS12110 at 88.679 kb on + strand, within EX31_RS12110 at 88.679 kb on + strand, within EX31_RS12110 at 88.679 kb on + strand, within EX31_RS12110 at 88.679 kb on + strand, within EX31_RS12110 at 88.731 kb on - strand, within EX31_RS12110 at 88.736 kb on + strand, within EX31_RS12110 at 88.748 kb on + strand, within EX31_RS12110 at 88.748 kb on + strand, within EX31_RS12110 at 88.749 kb on - strand, within EX31_RS12110 at 88.851 kb on + strand, within EX31_RS12110 at 88.852 kb on - strand, within EX31_RS12110 at 88.852 kb on - strand, within EX31_RS12110 at 88.875 kb on - strand, within EX31_RS12110 at 88.892 kb on + strand, within EX31_RS12110 at 88.892 kb on + strand, within EX31_RS12110 at 88.892 kb on + strand, within EX31_RS12110 at 88.893 kb on - strand, within EX31_RS12110 at 88.893 kb on - strand, within EX31_RS12110 at 88.894 kb on + strand, within EX31_RS12110 at 88.894 kb on + strand, within EX31_RS12110 at 88.894 kb on + strand, within EX31_RS12110 at 88.894 kb on + strand, within EX31_RS12110 at 88.894 kb on + strand, within EX31_RS12110 at 88.895 kb on - strand, within EX31_RS12110 at 88.907 kb on + strand, within EX31_RS12110 at 88.908 kb on - strand, within EX31_RS12110 at 88.927 kb on + strand, within EX31_RS12110 at 88.928 kb on - strand, within EX31_RS12110 at 88.928 kb on - strand, within EX31_RS12110 at 88.937 kb on + strand, within EX31_RS12110 at 88.938 kb on - strand, within EX31_RS12110 at 88.938 kb on - strand, within EX31_RS12110 at 88.938 kb on - strand, within EX31_RS12110 at 88.970 kb on - strand, within EX31_RS12110 at 88.970 kb on - strand, within EX31_RS12110 at 89.047 kb on - strand, within EX31_RS12110 at 89.169 kb on + strand at 89.176 kb on + strand at 89.177 kb on - strand at 89.185 kb on + strand at 89.185 kb on + strand at 89.186 kb on - strand at 89.186 kb on - strand at 89.188 kb on - strand at 89.188 kb on - strand at 89.205 kb on - strand at 89.208 kb on + strand at 89.209 kb on - strand at 89.209 kb on - strand at 89.216 kb on + strand at 89.216 kb on + strand at 89.217 kb on - strand at 89.220 kb on + strand at 89.310 kb on + strand at 89.311 kb on - strand at 89.336 kb on + strand at 89.336 kb on + strand at 89.337 kb on - strand at 89.346 kb on - strand at 89.453 kb on + strand at 89.453 kb on + strand at 89.454 kb on - strand at 89.454 kb on - strand at 89.483 kb on + strand at 89.507 kb on - strand at 89.634 kb on - strand at 89.634 kb on - strand at 89.634 kb on - strand at 89.667 kb on + strand, within EX31_RS12115 at 89.725 kb on + strand, within EX31_RS12115 at 89.725 kb on + strand, within EX31_RS12115 at 89.726 kb on - strand, within EX31_RS12115 at 89.726 kb on - strand, within EX31_RS12115 at 89.726 kb on - strand, within EX31_RS12115 at 89.726 kb on - strand, within EX31_RS12115 at 89.837 kb on + strand, within EX31_RS12115 at 89.837 kb on + strand, within EX31_RS12115 at 89.837 kb on + strand, within EX31_RS12115 at 89.837 kb on + strand, within EX31_RS12115 at 89.837 kb on + strand, within EX31_RS12115 at 89.838 kb on - strand, within EX31_RS12115 at 89.838 kb on - strand, within EX31_RS12115 at 89.915 kb on + strand, within EX31_RS12115 at 89.915 kb on + strand, within EX31_RS12115 at 89.915 kb on + strand, within EX31_RS12115 at 89.915 kb on + strand, within EX31_RS12115 at 89.915 kb on + strand, within EX31_RS12115 at 89.915 kb on + strand, within EX31_RS12115 at 89.916 kb on - strand, within EX31_RS12115 at 89.990 kb on + strand, within EX31_RS12115 at 90.083 kb on + strand, within EX31_RS12115 at 90.084 kb on - strand, within EX31_RS12115 at 90.084 kb on - strand, within EX31_RS12115 at 90.223 kb on - strand, within EX31_RS12115 at 90.233 kb on - strand, within EX31_RS12115 at 90.267 kb on - strand, within EX31_RS12115 at 90.400 kb on + strand, within EX31_RS12115 at 90.400 kb on + strand, within EX31_RS12115 at 90.400 kb on + strand, within EX31_RS12115 at 90.401 kb on - strand, within EX31_RS12115 at 90.401 kb on - strand, within EX31_RS12115 at 90.401 kb on - strand, within EX31_RS12115 at 90.504 kb on + strand, within EX31_RS12115 at 90.504 kb on + strand, within EX31_RS12115 at 90.505 kb on - strand, within EX31_RS12115 at 90.506 kb on + strand, within EX31_RS12115 at 90.609 kb on + strand, within EX31_RS12115 at 90.625 kb on - strand, within EX31_RS12115 at 90.625 kb on - strand, within EX31_RS12115 at 90.648 kb on + strand, within EX31_RS12115 at 90.648 kb on + strand, within EX31_RS12115 at 90.648 kb on + strand, within EX31_RS12115 at 90.648 kb on + strand, within EX31_RS12115 at 90.648 kb on + strand, within EX31_RS12115 at 90.648 kb on + strand, within EX31_RS12115 at 90.648 kb on + strand, within EX31_RS12115 at 90.648 kb on + strand, within EX31_RS12115 at 90.648 kb on + strand, within EX31_RS12115 at 90.648 kb on + strand, within EX31_RS12115 at 90.649 kb on - strand, within EX31_RS12115 at 90.649 kb on - strand, within EX31_RS12115 at 90.649 kb on - strand, within EX31_RS12115 at 90.649 kb on - strand, within EX31_RS12115 at 90.649 kb on - strand, within EX31_RS12115 at 90.649 kb on - strand, within EX31_RS12115 at 90.649 kb on - strand, within EX31_RS12115 at 90.671 kb on + strand, within EX31_RS12115 at 90.672 kb on - strand, within EX31_RS12115 at 90.733 kb on + strand, within EX31_RS12115 at 90.734 kb on - strand, within EX31_RS12115 at 90.734 kb on - strand, within EX31_RS12115 at 90.734 kb on - strand, within EX31_RS12115 at 90.734 kb on - strand, within EX31_RS12115 at 90.737 kb on + strand, within EX31_RS12115 at 90.737 kb on + strand, within EX31_RS12115 at 90.738 kb on - strand, within EX31_RS12115 at 90.752 kb on + strand, within EX31_RS12115 at 90.770 kb on + strand at 90.770 kb on + strand at 90.770 kb on + strand at 90.770 kb on + strand at 90.770 kb on + strand at 90.770 kb on + strand at 90.770 kb on + strand at 90.771 kb on - strand at 90.771 kb on - strand at 90.771 kb on - strand at 90.771 kb on - strand at 90.771 kb on - strand at 90.857 kb on - strand at 90.862 kb on + strand at 90.940 kb on + strand at 90.940 kb on + strand at 90.940 kb on + strand at 90.943 kb on + strand at 90.943 kb on + strand at 91.048 kb on + strand at 91.048 kb on + strand at 91.066 kb on + strand at 91.066 kb on + strand at 91.067 kb on - strand at 91.067 kb on - strand at 91.067 kb on - strand at 91.088 kb on + strand at 91.088 kb on + strand at 91.088 kb on + strand at 91.088 kb on + strand at 91.089 kb on - strand at 91.089 kb on - strand at 91.089 kb on - strand at 91.089 kb on - strand at 91.089 kb on - strand at 91.091 kb on + strand at 91.091 kb on + strand at 91.092 kb on - strand at 91.092 kb on - strand at 91.092 kb on - strand at 91.092 kb on - strand at 91.092 kb on - strand at 91.092 kb on - strand at 91.141 kb on + strand at 91.156 kb on - strand at 91.180 kb on - strand at 91.180 kb on - strand at 91.259 kb on + strand at 91.477 kb on + strand, within EX31_RS12120 at 91.477 kb on + strand, within EX31_RS12120 at 91.477 kb on + strand, within EX31_RS12120 at 91.477 kb on + strand, within EX31_RS12120 at 91.477 kb on + strand, within EX31_RS12120 at 91.477 kb on + strand, within EX31_RS12120 at 91.477 kb on + strand, within EX31_RS12120 at 91.477 kb on + strand, within EX31_RS12120 at 91.478 kb on - strand, within EX31_RS12120 at 91.478 kb on - strand, within EX31_RS12120 at 91.479 kb on + strand, within EX31_RS12120 at 91.479 kb on + strand, within EX31_RS12120 at 91.479 kb on + strand, within EX31_RS12120 at 91.479 kb on + strand, within EX31_RS12120 at 91.479 kb on + strand, within EX31_RS12120 at 91.479 kb on + strand, within EX31_RS12120 at 91.479 kb on + strand, within EX31_RS12120 at 91.479 kb on + strand, within EX31_RS12120 at 91.479 kb on + strand, within EX31_RS12120 at 91.480 kb on - strand, within EX31_RS12120 at 91.480 kb on - strand, within EX31_RS12120 at 91.480 kb on - strand, within EX31_RS12120 at 91.480 kb on - strand, within EX31_RS12120 at 91.480 kb on - strand, within EX31_RS12120 at 91.480 kb on - strand, within EX31_RS12120 at 91.712 kb on + strand, within EX31_RS12120 at 91.712 kb on + strand, within EX31_RS12120 at 91.712 kb on + strand, within EX31_RS12120 at 91.712 kb on + strand, within EX31_RS12120 at 91.712 kb on + strand, within EX31_RS12120 at 91.713 kb on - strand, within EX31_RS12120 at 91.713 kb on - strand, within EX31_RS12120 at 91.713 kb on - strand, within EX31_RS12120 at 91.713 kb on - strand, within EX31_RS12120 at 91.713 kb on - strand, within EX31_RS12120 at 91.713 kb on - strand, within EX31_RS12120 at 91.713 kb on - strand, within EX31_RS12120 at 91.771 kb on + strand, within EX31_RS12120 at 91.771 kb on + strand, within EX31_RS12120 at 91.771 kb on + strand, within EX31_RS12120 at 91.771 kb on + strand, within EX31_RS12120 at 91.771 kb on + strand, within EX31_RS12120 at 91.772 kb on - strand, within EX31_RS12120 at 91.772 kb on - strand, within EX31_RS12120 at 91.772 kb on - strand, within EX31_RS12120 at 91.772 kb on - strand, within EX31_RS12120 at 91.776 kb on + strand, within EX31_RS12120 at 91.776 kb on + strand, within EX31_RS12120 at 91.776 kb on + strand, within EX31_RS12120 at 91.777 kb on - strand, within EX31_RS12120 at 91.777 kb on - strand, within EX31_RS12120 at 91.777 kb on - strand, within EX31_RS12120 at 91.861 kb on + strand, within EX31_RS12120 at 91.861 kb on + strand, within EX31_RS12120 at 91.862 kb on - strand, within EX31_RS12120 at 91.862 kb on - strand, within EX31_RS12120 at 91.878 kb on + strand, within EX31_RS12120 at 91.878 kb on + strand, within EX31_RS12120 at 91.878 kb on + strand, within EX31_RS12120 at 91.879 kb on - strand, within EX31_RS12120
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 88,664 + EX31_RS12110 0.32 +0.3 88,664 + EX31_RS12110 0.32 -1.3 88,664 + EX31_RS12110 0.32 -0.1 88,664 + EX31_RS12110 0.32 -0.3 88,679 + EX31_RS12110 0.34 -0.4 88,679 + EX31_RS12110 0.34 +0.6 88,679 + EX31_RS12110 0.34 +0.4 88,679 + EX31_RS12110 0.34 -0.3 88,679 + EX31_RS12110 0.34 +0.9 88,679 + EX31_RS12110 0.34 +0.0 88,731 - EX31_RS12110 0.42 +0.1 88,736 + EX31_RS12110 0.43 -0.1 88,748 + EX31_RS12110 0.44 +0.3 88,748 + EX31_RS12110 0.44 +0.4 88,749 - EX31_RS12110 0.45 +0.5 88,851 + EX31_RS12110 0.60 +0.1 88,852 - EX31_RS12110 0.60 -0.4 88,852 - EX31_RS12110 0.60 -0.7 88,875 - EX31_RS12110 0.63 +0.5 88,892 + EX31_RS12110 0.66 -0.2 88,892 + EX31_RS12110 0.66 +0.3 88,892 + EX31_RS12110 0.66 -2.0 88,893 - EX31_RS12110 0.66 -1.0 88,893 - EX31_RS12110 0.66 +0.2 88,894 + EX31_RS12110 0.66 -0.0 88,894 + EX31_RS12110 0.66 -0.7 88,894 + EX31_RS12110 0.66 +0.2 88,894 + EX31_RS12110 0.66 +0.4 88,894 + EX31_RS12110 0.66 -0.8 88,895 - EX31_RS12110 0.66 -0.3 88,907 + EX31_RS12110 0.68 +0.3 88,908 - EX31_RS12110 0.68 -1.5 88,927 + EX31_RS12110 0.71 -0.3 88,928 - EX31_RS12110 0.71 -0.8 88,928 - EX31_RS12110 0.71 -0.1 88,937 + EX31_RS12110 0.73 -0.7 88,938 - EX31_RS12110 0.73 +0.5 88,938 - EX31_RS12110 0.73 -0.1 88,938 - EX31_RS12110 0.73 +0.1 88,970 - EX31_RS12110 0.78 -1.0 88,970 - EX31_RS12110 0.78 -0.6 89,047 - EX31_RS12110 0.89 -0.9 89,169 + -0.0 89,176 + -0.3 89,177 - -0.0 89,185 + +0.1 89,185 + -0.2 89,186 - -0.7 89,186 - -0.3 89,188 - -1.2 89,188 - -0.2 89,205 - +0.5 89,208 + -0.6 89,209 - -2.2 89,209 - +0.1 89,216 + +0.9 89,216 + +0.1 89,217 - +1.6 89,220 + +0.8 89,310 + +0.1 89,311 - -0.5 89,336 + -1.2 89,336 + +1.1 89,337 - -0.0 89,346 - -0.7 89,453 + -0.4 89,453 + -0.2 89,454 - -1.0 89,454 - -0.5 89,483 + -0.8 89,507 - -2.9 89,634 - +0.1 89,634 - -0.1 89,634 - -1.3 89,667 + EX31_RS12115 0.10 -0.4 89,725 + EX31_RS12115 0.14 +0.9 89,725 + EX31_RS12115 0.14 +0.8 89,726 - EX31_RS12115 0.14 -0.7 89,726 - EX31_RS12115 0.14 +0.2 89,726 - EX31_RS12115 0.14 -0.5 89,726 - EX31_RS12115 0.14 +0.1 89,837 + EX31_RS12115 0.23 -0.7 89,837 + EX31_RS12115 0.23 +0.2 89,837 + EX31_RS12115 0.23 -0.1 89,837 + EX31_RS12115 0.23 +0.9 89,837 + EX31_RS12115 0.23 +1.1 89,838 - EX31_RS12115 0.23 -0.9 89,838 - EX31_RS12115 0.23 +0.1 89,915 + EX31_RS12115 0.28 -0.0 89,915 + EX31_RS12115 0.28 +0.1 89,915 + EX31_RS12115 0.28 -0.2 89,915 + EX31_RS12115 0.28 +0.5 89,915 + EX31_RS12115 0.28 -0.2 89,915 + EX31_RS12115 0.28 +0.3 89,916 - EX31_RS12115 0.28 -0.2 89,990 + EX31_RS12115 0.34 -0.6 90,083 + EX31_RS12115 0.40 -0.0 90,084 - EX31_RS12115 0.41 -0.5 90,084 - EX31_RS12115 0.41 -0.2 90,223 - EX31_RS12115 0.51 -0.8 90,233 - EX31_RS12115 0.51 -0.3 90,267 - EX31_RS12115 0.54 +0.4 90,400 + EX31_RS12115 0.64 -0.4 90,400 + EX31_RS12115 0.64 -0.3 90,400 + EX31_RS12115 0.64 +0.7 90,401 - EX31_RS12115 0.64 +0.7 90,401 - EX31_RS12115 0.64 -0.0 90,401 - EX31_RS12115 0.64 +0.4 90,504 + EX31_RS12115 0.71 +0.5 90,504 + EX31_RS12115 0.71 -0.1 90,505 - EX31_RS12115 0.71 +0.5 90,506 + EX31_RS12115 0.71 +1.5 90,609 + EX31_RS12115 0.79 +0.4 90,625 - EX31_RS12115 0.80 -0.6 90,625 - EX31_RS12115 0.80 +0.0 90,648 + EX31_RS12115 0.82 +0.8 90,648 + EX31_RS12115 0.82 +0.1 90,648 + EX31_RS12115 0.82 -1.1 90,648 + EX31_RS12115 0.82 -0.1 90,648 + EX31_RS12115 0.82 -0.2 90,648 + EX31_RS12115 0.82 -0.4 90,648 + EX31_RS12115 0.82 +1.1 90,648 + EX31_RS12115 0.82 +0.9 90,648 + EX31_RS12115 0.82 -0.2 90,648 + EX31_RS12115 0.82 +0.7 90,649 - EX31_RS12115 0.82 -0.3 90,649 - EX31_RS12115 0.82 +0.5 90,649 - EX31_RS12115 0.82 +0.3 90,649 - EX31_RS12115 0.82 +0.3 90,649 - EX31_RS12115 0.82 -0.9 90,649 - EX31_RS12115 0.82 -0.6 90,649 - EX31_RS12115 0.82 -0.7 90,671 + EX31_RS12115 0.83 +0.0 90,672 - EX31_RS12115 0.84 -0.5 90,733 + EX31_RS12115 0.88 +0.2 90,734 - EX31_RS12115 0.88 +0.2 90,734 - EX31_RS12115 0.88 -0.2 90,734 - EX31_RS12115 0.88 -0.6 90,734 - EX31_RS12115 0.88 -0.9 90,737 + EX31_RS12115 0.88 -0.2 90,737 + EX31_RS12115 0.88 -0.2 90,738 - EX31_RS12115 0.88 +0.5 90,752 + EX31_RS12115 0.89 -0.4 90,770 + +0.3 90,770 + -0.5 90,770 + +0.0 90,770 + -0.6 90,770 + -0.4 90,770 + +0.6 90,770 + +0.4 90,771 - +0.0 90,771 - +0.2 90,771 - -0.3 90,771 - -0.6 90,771 - -0.5 90,857 - -0.7 90,862 + -0.2 90,940 + +1.0 90,940 + -0.3 90,940 + -0.3 90,943 + +0.4 90,943 + -0.5 91,048 + -1.0 91,048 + +1.1 91,066 + +0.5 91,066 + +0.2 91,067 - +1.1 91,067 - -0.0 91,067 - +0.4 91,088 + -2.0 91,088 + -0.5 91,088 + +0.6 91,088 + -0.4 91,089 - -0.7 91,089 - +0.3 91,089 - +0.4 91,089 - -0.4 91,089 - +0.6 91,091 + -1.1 91,091 + +0.5 91,092 - +0.1 91,092 - +0.4 91,092 - +0.2 91,092 - -0.5 91,092 - +0.3 91,092 - -0.0 91,141 + +0.1 91,156 - +0.0 91,180 - -0.9 91,180 - +1.0 91,259 + +0.7 91,477 + EX31_RS12120 0.19 -0.4 91,477 + EX31_RS12120 0.19 +0.2 91,477 + EX31_RS12120 0.19 +0.1 91,477 + EX31_RS12120 0.19 -0.2 91,477 + EX31_RS12120 0.19 -1.2 91,477 + EX31_RS12120 0.19 -0.2 91,477 + EX31_RS12120 0.19 +0.8 91,477 + EX31_RS12120 0.19 -0.1 91,478 - EX31_RS12120 0.19 -0.5 91,478 - EX31_RS12120 0.19 -0.3 91,479 + EX31_RS12120 0.19 -0.5 91,479 + EX31_RS12120 0.19 +0.2 91,479 + EX31_RS12120 0.19 -0.1 91,479 + EX31_RS12120 0.19 -0.5 91,479 + EX31_RS12120 0.19 -0.3 91,479 + EX31_RS12120 0.19 +0.5 91,479 + EX31_RS12120 0.19 +0.1 91,479 + EX31_RS12120 0.19 +0.0 91,479 + EX31_RS12120 0.19 +0.2 91,480 - EX31_RS12120 0.19 +0.2 91,480 - EX31_RS12120 0.19 +0.0 91,480 - EX31_RS12120 0.19 -1.3 91,480 - EX31_RS12120 0.19 -1.1 91,480 - EX31_RS12120 0.19 -0.1 91,480 - EX31_RS12120 0.19 -0.4 91,712 + EX31_RS12120 0.33 +1.7 91,712 + EX31_RS12120 0.33 -0.0 91,712 + EX31_RS12120 0.33 -0.1 91,712 + EX31_RS12120 0.33 +0.2 91,712 + EX31_RS12120 0.33 -0.1 91,713 - EX31_RS12120 0.33 +1.6 91,713 - EX31_RS12120 0.33 -0.9 91,713 - EX31_RS12120 0.33 -0.3 91,713 - EX31_RS12120 0.33 -0.5 91,713 - EX31_RS12120 0.33 -0.2 91,713 - EX31_RS12120 0.33 -0.6 91,713 - EX31_RS12120 0.33 +0.3 91,771 + EX31_RS12120 0.37 +0.5 91,771 + EX31_RS12120 0.37 +0.3 91,771 + EX31_RS12120 0.37 -0.2 91,771 + EX31_RS12120 0.37 -0.3 91,771 + EX31_RS12120 0.37 +1.3 91,772 - EX31_RS12120 0.37 -0.7 91,772 - EX31_RS12120 0.37 -0.6 91,772 - EX31_RS12120 0.37 -0.8 91,772 - EX31_RS12120 0.37 -1.1 91,776 + EX31_RS12120 0.37 +0.0 91,776 + EX31_RS12120 0.37 +0.4 91,776 + EX31_RS12120 0.37 +0.8 91,777 - EX31_RS12120 0.37 +1.6 91,777 - EX31_RS12120 0.37 -0.9 91,777 - EX31_RS12120 0.37 -0.3 91,861 + EX31_RS12120 0.42 +0.1 91,861 + EX31_RS12120 0.42 -0.2 91,862 - EX31_RS12120 0.42 +0.3 91,862 - EX31_RS12120 0.42 +0.4 91,878 + EX31_RS12120 0.43 +0.5 91,878 + EX31_RS12120 0.43 +0.3 91,878 + EX31_RS12120 0.43 +1.0 91,879 - EX31_RS12120 0.43 -0.2
Or see this region's nucleotide sequence