Strain Fitness in Rahnella sp. WP5 around EX31_RS10160

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10155 and EX31_RS10160 are separated by 633 nucleotidesEX31_RS10160 and EX31_RS10165 are separated by 323 nucleotides EX31_RS10155: EX31_RS10155 - ROK family protein, at 242,448 to 243,377 _RS10155 EX31_RS10160: EX31_RS10160 - diaminopimelate epimerase, at 244,011 to 244,850 _RS10160 EX31_RS10165: EX31_RS10165 - aromatic acid/H+ symport family MFS transporter, at 245,174 to 246,553 _RS10165 Position (kb) 244 245Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 243.081 kb on - strand, within EX31_RS10155at 243.245 kb on + strand, within EX31_RS10155at 243.246 kb on - strand, within EX31_RS10155at 243.246 kb on - strand, within EX31_RS10155at 243.292 kb on - strandat 243.292 kb on - strandat 243.292 kb on - strandat 243.395 kb on + strandat 243.661 kb on + strandat 243.674 kb on - strandat 243.674 kb on - strandat 243.678 kb on - strandat 243.678 kb on - strandat 243.727 kb on + strandat 243.727 kb on + strandat 243.727 kb on + strandat 243.727 kb on + strandat 243.789 kb on + strandat 243.789 kb on + strandat 243.800 kb on + strandat 243.801 kb on - strandat 243.898 kb on - strandat 243.939 kb on - strandat 243.939 kb on - strandat 243.947 kb on + strandat 243.956 kb on + strandat 243.956 kb on + strandat 243.957 kb on - strandat 243.974 kb on + strandat 243.975 kb on - strandat 243.980 kb on + strandat 243.980 kb on + strandat 244.004 kb on + strandat 244.004 kb on + strandat 244.005 kb on - strandat 244.181 kb on + strand, within EX31_RS10160at 244.182 kb on - strand, within EX31_RS10160at 244.184 kb on + strand, within EX31_RS10160at 244.233 kb on - strand, within EX31_RS10160at 244.292 kb on + strand, within EX31_RS10160at 244.292 kb on + strand, within EX31_RS10160at 244.309 kb on + strand, within EX31_RS10160at 244.309 kb on + strand, within EX31_RS10160at 244.309 kb on + strand, within EX31_RS10160at 244.309 kb on + strand, within EX31_RS10160at 244.310 kb on - strand, within EX31_RS10160at 244.397 kb on - strand, within EX31_RS10160at 244.397 kb on - strand, within EX31_RS10160at 244.462 kb on + strand, within EX31_RS10160at 244.644 kb on - strand, within EX31_RS10160at 244.644 kb on - strand, within EX31_RS10160at 244.644 kb on - strand, within EX31_RS10160at 244.644 kb on - strand, within EX31_RS10160at 244.723 kb on + strand, within EX31_RS10160at 244.723 kb on + strand, within EX31_RS10160at 244.724 kb on - strand, within EX31_RS10160at 244.724 kb on - strand, within EX31_RS10160at 244.724 kb on - strand, within EX31_RS10160at 244.724 kb on - strand, within EX31_RS10160at 244.724 kb on - strand, within EX31_RS10160at 244.727 kb on + strand, within EX31_RS10160at 244.727 kb on + strand, within EX31_RS10160at 244.727 kb on + strand, within EX31_RS10160at 244.728 kb on - strand, within EX31_RS10160at 244.728 kb on - strand, within EX31_RS10160at 244.728 kb on - strand, within EX31_RS10160at 244.728 kb on - strand, within EX31_RS10160at 244.728 kb on - strand, within EX31_RS10160at 244.807 kb on + strandat 244.812 kb on - strandat 244.849 kb on - strandat 245.148 kb on - strandat 245.148 kb on - strandat 245.234 kb on + strandat 245.235 kb on - strandat 245.492 kb on - strand, within EX31_RS10165at 245.566 kb on + strand, within EX31_RS10165at 245.566 kb on + strand, within EX31_RS10165at 245.591 kb on + strand, within EX31_RS10165at 245.592 kb on - strand, within EX31_RS10165at 245.592 kb on - strand, within EX31_RS10165at 245.633 kb on + strand, within EX31_RS10165at 245.633 kb on + strand, within EX31_RS10165at 245.633 kb on + strand, within EX31_RS10165at 245.633 kb on + strand, within EX31_RS10165at 245.754 kb on + strand, within EX31_RS10165at 245.786 kb on + strand, within EX31_RS10165at 245.786 kb on + strand, within EX31_RS10165at 245.786 kb on + strand, within EX31_RS10165at 245.786 kb on + strand, within EX31_RS10165at 245.786 kb on + strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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243,081 - EX31_RS10155 0.68 +0.5
243,245 + EX31_RS10155 0.86 +0.2
243,246 - EX31_RS10155 0.86 +0.1
243,246 - EX31_RS10155 0.86 -1.8
243,292 - +0.6
243,292 - +0.7
243,292 - +0.2
243,395 + +0.1
243,661 + +0.4
243,674 - -1.0
243,674 - +0.1
243,678 - +0.5
243,678 - -1.6
243,727 + +1.1
243,727 + -0.8
243,727 + -0.3
243,727 + +0.7
243,789 + -0.4
243,789 + +1.8
243,800 + -0.4
243,801 - -0.5
243,898 - -0.8
243,939 - +0.4
243,939 - -0.2
243,947 + +0.6
243,956 + -1.2
243,956 + -0.1
243,957 - +1.4
243,974 + +1.2
243,975 - +0.8
243,980 + +0.0
243,980 + +0.8
244,004 + -1.7
244,004 + -0.2
244,005 - -1.6
244,181 + EX31_RS10160 0.20 +0.4
244,182 - EX31_RS10160 0.20 +0.8
244,184 + EX31_RS10160 0.21 -1.6
244,233 - EX31_RS10160 0.26 +0.2
244,292 + EX31_RS10160 0.33 -0.7
244,292 + EX31_RS10160 0.33 -0.4
244,309 + EX31_RS10160 0.35 -0.4
244,309 + EX31_RS10160 0.35 -0.9
244,309 + EX31_RS10160 0.35 -0.3
244,309 + EX31_RS10160 0.35 -0.8
244,310 - EX31_RS10160 0.36 -0.2
244,397 - EX31_RS10160 0.46 -0.8
244,397 - EX31_RS10160 0.46 +0.1
244,462 + EX31_RS10160 0.54 -1.0
244,644 - EX31_RS10160 0.75 -0.2
244,644 - EX31_RS10160 0.75 -1.7
244,644 - EX31_RS10160 0.75 +0.8
244,644 - EX31_RS10160 0.75 -0.9
244,723 + EX31_RS10160 0.85 +0.5
244,723 + EX31_RS10160 0.85 -0.2
244,724 - EX31_RS10160 0.85 -0.8
244,724 - EX31_RS10160 0.85 -0.6
244,724 - EX31_RS10160 0.85 -2.5
244,724 - EX31_RS10160 0.85 +0.5
244,724 - EX31_RS10160 0.85 +0.9
244,727 + EX31_RS10160 0.85 -0.2
244,727 + EX31_RS10160 0.85 +0.1
244,727 + EX31_RS10160 0.85 -0.9
244,728 - EX31_RS10160 0.85 -3.3
244,728 - EX31_RS10160 0.85 +0.5
244,728 - EX31_RS10160 0.85 -0.3
244,728 - EX31_RS10160 0.85 -0.2
244,728 - EX31_RS10160 0.85 +0.6
244,807 + -1.1
244,812 - +0.8
244,849 - -0.5
245,148 - -0.5
245,148 - +0.8
245,234 + +0.4
245,235 - +0.2
245,492 - EX31_RS10165 0.23 +0.2
245,566 + EX31_RS10165 0.28 -1.4
245,566 + EX31_RS10165 0.28 +0.7
245,591 + EX31_RS10165 0.30 +0.2
245,592 - EX31_RS10165 0.30 +0.8
245,592 - EX31_RS10165 0.30 -0.7
245,633 + EX31_RS10165 0.33 -0.5
245,633 + EX31_RS10165 0.33 -0.2
245,633 + EX31_RS10165 0.33 +0.8
245,633 + EX31_RS10165 0.33 +0.3
245,754 + EX31_RS10165 0.42 -1.0
245,786 + EX31_RS10165 0.44 -0.9
245,786 + EX31_RS10165 0.44 +0.2
245,786 + EX31_RS10165 0.44 -0.2
245,786 + EX31_RS10165 0.44 -0.1
245,786 + EX31_RS10165 0.44 -0.2
245,787 - EX31_RS10165 0.44 +0.3
245,787 - EX31_RS10165 0.44 -0.4
245,787 - EX31_RS10165 0.44 +0.8
245,787 - EX31_RS10165 0.44 -0.3
245,787 - EX31_RS10165 0.44 +0.4
245,787 - EX31_RS10165 0.44 +0.3

Or see this region's nucleotide sequence