Strain Fitness in Rahnella sp. WP5 around EX31_RS01420

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01415 and EX31_RS01420 overlap by 4 nucleotidesEX31_RS01420 and EX31_RS01425 are separated by 192 nucleotides EX31_RS01415: EX31_RS01415 - virulence factor SrfB, at 315,168 to 318,140 _RS01415 EX31_RS01420: EX31_RS01420 - virulence factor, at 318,137 to 320,512 _RS01420 EX31_RS01425: EX31_RS01425 - class I fructose-bisphosphate aldolase, at 320,705 to 321,754 _RS01425 Position (kb) 318 319 320 321Strain fitness (log2 ratio) -2 -1 0 1 2 3at 317.147 kb on + strand, within EX31_RS01415at 317.147 kb on + strand, within EX31_RS01415at 317.148 kb on - strand, within EX31_RS01415at 317.148 kb on - strand, within EX31_RS01415at 317.412 kb on - strand, within EX31_RS01415at 317.412 kb on - strand, within EX31_RS01415at 317.546 kb on + strand, within EX31_RS01415at 317.546 kb on + strand, within EX31_RS01415at 317.546 kb on + strand, within EX31_RS01415at 317.546 kb on + strand, within EX31_RS01415at 317.546 kb on + strand, within EX31_RS01415at 317.547 kb on - strand, within EX31_RS01415at 317.668 kb on + strand, within EX31_RS01415at 317.668 kb on + strand, within EX31_RS01415at 317.669 kb on - strand, within EX31_RS01415at 317.685 kb on + strand, within EX31_RS01415at 317.685 kb on + strand, within EX31_RS01415at 317.686 kb on - strand, within EX31_RS01415at 317.686 kb on - strand, within EX31_RS01415at 317.735 kb on + strand, within EX31_RS01415at 317.768 kb on + strand, within EX31_RS01415at 317.808 kb on + strand, within EX31_RS01415at 317.808 kb on + strand, within EX31_RS01415at 317.904 kb on + strandat 317.905 kb on - strandat 317.906 kb on + strandat 317.907 kb on - strandat 317.907 kb on - strandat 318.021 kb on - strandat 318.086 kb on + strandat 318.086 kb on + strandat 318.086 kb on + strandat 318.087 kb on - strandat 318.128 kb on - strandat 318.428 kb on + strand, within EX31_RS01420at 318.428 kb on + strand, within EX31_RS01420at 318.429 kb on - strand, within EX31_RS01420at 318.633 kb on - strand, within EX31_RS01420at 318.673 kb on + strand, within EX31_RS01420at 318.716 kb on - strand, within EX31_RS01420at 318.794 kb on + strand, within EX31_RS01420at 318.906 kb on - strand, within EX31_RS01420at 319.122 kb on + strand, within EX31_RS01420at 319.122 kb on + strand, within EX31_RS01420at 319.123 kb on - strand, within EX31_RS01420at 319.171 kb on - strand, within EX31_RS01420at 319.269 kb on - strand, within EX31_RS01420at 319.269 kb on - strand, within EX31_RS01420at 319.269 kb on - strand, within EX31_RS01420at 319.358 kb on + strand, within EX31_RS01420at 319.555 kb on + strand, within EX31_RS01420at 319.556 kb on - strand, within EX31_RS01420at 319.617 kb on + strand, within EX31_RS01420at 319.804 kb on + strand, within EX31_RS01420at 319.804 kb on + strand, within EX31_RS01420at 319.805 kb on - strand, within EX31_RS01420at 319.805 kb on - strand, within EX31_RS01420at 319.805 kb on - strand, within EX31_RS01420at 319.882 kb on + strand, within EX31_RS01420at 319.896 kb on + strand, within EX31_RS01420at 320.132 kb on - strand, within EX31_RS01420at 320.272 kb on + strand, within EX31_RS01420at 320.273 kb on - strand, within EX31_RS01420at 320.379 kb on - strandat 320.492 kb on - strandat 320.492 kb on - strandat 320.510 kb on + strandat 320.510 kb on + strandat 320.511 kb on - strandat 320.514 kb on - strandat 320.554 kb on + strandat 320.596 kb on - strandat 320.636 kb on - strandat 320.637 kb on + strandat 320.637 kb on + strandat 320.637 kb on + strandat 320.638 kb on - strandat 320.638 kb on - strandat 320.638 kb on - strandat 320.641 kb on + strandat 320.641 kb on + strandat 320.642 kb on - strandat 320.658 kb on - strandat 320.658 kb on - strandat 320.704 kb on + strandat 320.705 kb on - strandat 320.714 kb on - strandat 320.719 kb on + strandat 320.720 kb on - strandat 320.787 kb on + strandat 320.787 kb on + strandat 320.787 kb on + strandat 320.788 kb on - strandat 320.788 kb on - strandat 320.789 kb on + strandat 320.789 kb on + strandat 320.789 kb on + strandat 320.789 kb on + strandat 320.789 kb on + strandat 320.790 kb on - strandat 320.790 kb on - strandat 320.790 kb on - strandat 320.873 kb on + strand, within EX31_RS01425at 320.874 kb on - strand, within EX31_RS01425at 320.975 kb on + strand, within EX31_RS01425at 321.126 kb on - strand, within EX31_RS01425at 321.126 kb on - strand, within EX31_RS01425at 321.137 kb on + strand, within EX31_RS01425at 321.137 kb on + strand, within EX31_RS01425at 321.137 kb on + strand, within EX31_RS01425at 321.138 kb on - strand, within EX31_RS01425at 321.138 kb on - strand, within EX31_RS01425at 321.153 kb on - strand, within EX31_RS01425at 321.153 kb on - strand, within EX31_RS01425at 321.240 kb on + strand, within EX31_RS01425at 321.241 kb on - strand, within EX31_RS01425at 321.241 kb on - strand, within EX31_RS01425at 321.241 kb on - strand, within EX31_RS01425at 321.305 kb on + strand, within EX31_RS01425at 321.434 kb on - strand, within EX31_RS01425at 321.434 kb on - strand, within EX31_RS01425

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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317,147 + EX31_RS01415 0.67 -1.9
317,147 + EX31_RS01415 0.67 +0.3
317,148 - EX31_RS01415 0.67 -1.3
317,148 - EX31_RS01415 0.67 +0.6
317,412 - EX31_RS01415 0.75 +1.0
317,412 - EX31_RS01415 0.75 +1.1
317,546 + EX31_RS01415 0.80 -0.0
317,546 + EX31_RS01415 0.80 -1.3
317,546 + EX31_RS01415 0.80 -1.3
317,546 + EX31_RS01415 0.80 +1.5
317,546 + EX31_RS01415 0.80 -1.5
317,547 - EX31_RS01415 0.80 -0.2
317,668 + EX31_RS01415 0.84 +0.6
317,668 + EX31_RS01415 0.84 +1.2
317,669 - EX31_RS01415 0.84 +0.5
317,685 + EX31_RS01415 0.85 -0.4
317,685 + EX31_RS01415 0.85 +0.3
317,686 - EX31_RS01415 0.85 +0.5
317,686 - EX31_RS01415 0.85 -0.6
317,735 + EX31_RS01415 0.86 +0.0
317,768 + EX31_RS01415 0.87 +1.3
317,808 + EX31_RS01415 0.89 -1.4
317,808 + EX31_RS01415 0.89 -2.0
317,904 + -0.1
317,905 - -0.3
317,906 + -0.4
317,907 - -0.7
317,907 - -0.3
318,021 - +3.2
318,086 + +0.7
318,086 + -0.1
318,086 + +1.2
318,087 - +0.4
318,128 - +1.3
318,428 + EX31_RS01420 0.12 +0.4
318,428 + EX31_RS01420 0.12 -0.2
318,429 - EX31_RS01420 0.12 +0.1
318,633 - EX31_RS01420 0.21 -1.5
318,673 + EX31_RS01420 0.23 +1.2
318,716 - EX31_RS01420 0.24 +0.6
318,794 + EX31_RS01420 0.28 +1.1
318,906 - EX31_RS01420 0.32 -1.3
319,122 + EX31_RS01420 0.41 +0.3
319,122 + EX31_RS01420 0.41 +2.0
319,123 - EX31_RS01420 0.41 -1.7
319,171 - EX31_RS01420 0.44 -1.6
319,269 - EX31_RS01420 0.48 +0.9
319,269 - EX31_RS01420 0.48 +0.5
319,269 - EX31_RS01420 0.48 -1.1
319,358 + EX31_RS01420 0.51 +0.8
319,555 + EX31_RS01420 0.60 +0.7
319,556 - EX31_RS01420 0.60 +0.7
319,617 + EX31_RS01420 0.62 -0.3
319,804 + EX31_RS01420 0.70 -0.8
319,804 + EX31_RS01420 0.70 -0.1
319,805 - EX31_RS01420 0.70 +0.7
319,805 - EX31_RS01420 0.70 +0.3
319,805 - EX31_RS01420 0.70 +0.7
319,882 + EX31_RS01420 0.73 -0.0
319,896 + EX31_RS01420 0.74 +1.0
320,132 - EX31_RS01420 0.84 -2.2
320,272 + EX31_RS01420 0.90 -0.2
320,273 - EX31_RS01420 0.90 -1.2
320,379 - +1.4
320,492 - -1.0
320,492 - -0.5
320,510 + +0.5
320,510 + +0.5
320,511 - -0.4
320,514 - +0.7
320,554 + -0.5
320,596 - -1.5
320,636 - -1.0
320,637 + -0.8
320,637 + +0.4
320,637 + +0.3
320,638 - -0.2
320,638 - -0.3
320,638 - +0.5
320,641 + -0.1
320,641 + -0.3
320,642 - +0.3
320,658 - -0.4
320,658 - +1.1
320,704 + +0.5
320,705 - -0.1
320,714 - -2.6
320,719 + -0.0
320,720 - -0.3
320,787 + +0.6
320,787 + +0.3
320,787 + +0.1
320,788 - -1.2
320,788 - -1.1
320,789 + +0.6
320,789 + -0.1
320,789 + +0.1
320,789 + +0.7
320,789 + -0.2
320,790 - +1.1
320,790 - +0.0
320,790 - +1.1
320,873 + EX31_RS01425 0.16 +0.3
320,874 - EX31_RS01425 0.16 +1.0
320,975 + EX31_RS01425 0.26 -1.2
321,126 - EX31_RS01425 0.40 +0.2
321,126 - EX31_RS01425 0.40 -0.7
321,137 + EX31_RS01425 0.41 -0.0
321,137 + EX31_RS01425 0.41 +0.3
321,137 + EX31_RS01425 0.41 +0.6
321,138 - EX31_RS01425 0.41 +0.4
321,138 - EX31_RS01425 0.41 -0.5
321,153 - EX31_RS01425 0.43 +0.6
321,153 - EX31_RS01425 0.43 -0.7
321,240 + EX31_RS01425 0.51 +0.1
321,241 - EX31_RS01425 0.51 +0.3
321,241 - EX31_RS01425 0.51 +0.4
321,241 - EX31_RS01425 0.51 +0.5
321,305 + EX31_RS01425 0.57 +0.6
321,434 - EX31_RS01425 0.69 +0.9
321,434 - EX31_RS01425 0.69 +0.3

Or see this region's nucleotide sequence