Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23295 and EX31_RS23300 are separated by 421 nucleotides EX31_RS23300 and EX31_RS23305 are separated by 76 nucleotides EX31_RS23305 and EX31_RS23310 are separated by 261 nucleotides
EX31_RS23295: EX31_RS23295 - flavodoxin FldA, at 419,683 to 420,210
_RS23295
EX31_RS23300: EX31_RS23300 - methyl-accepting chemotaxis protein, at 420,632 to 422,296
_RS23300
EX31_RS23305: EX31_RS23305 - LexA regulated protein, at 422,373 to 422,654
_RS23305
EX31_RS23310: EX31_RS23310 - esterase, at 422,916 to 423,698
_RS23310
Position (kb) 420
421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2 at 419.635 kb on - strand at 419.659 kb on - strand at 419.707 kb on - strand at 420.262 kb on - strand at 420.277 kb on - strand at 420.277 kb on - strand at 420.299 kb on + strand at 420.299 kb on + strand at 420.300 kb on - strand at 420.300 kb on - strand at 420.300 kb on - strand at 420.300 kb on - strand at 420.300 kb on - strand at 420.319 kb on + strand at 420.319 kb on + strand at 420.319 kb on + strand at 420.320 kb on - strand at 420.320 kb on - strand at 420.330 kb on + strand at 420.330 kb on + strand at 420.330 kb on + strand at 420.331 kb on - strand at 420.337 kb on - strand at 420.337 kb on - strand at 420.352 kb on + strand at 420.353 kb on - strand at 420.353 kb on - strand at 420.408 kb on - strand at 420.408 kb on - strand at 420.408 kb on - strand at 420.408 kb on - strand at 420.408 kb on - strand at 420.432 kb on + strand at 420.432 kb on + strand at 420.432 kb on + strand at 420.433 kb on - strand at 420.433 kb on - strand at 420.472 kb on + strand at 420.498 kb on + strand at 420.498 kb on + strand at 420.498 kb on + strand at 420.498 kb on + strand at 420.498 kb on + strand at 420.498 kb on + strand at 420.498 kb on + strand at 420.499 kb on - strand at 420.499 kb on - strand at 420.499 kb on - strand at 420.499 kb on - strand at 420.499 kb on - strand at 420.501 kb on + strand at 420.501 kb on + strand at 420.501 kb on + strand at 420.560 kb on + strand at 420.561 kb on - strand at 420.561 kb on - strand at 420.628 kb on + strand at 420.628 kb on + strand at 420.629 kb on - strand at 420.629 kb on - strand at 420.629 kb on - strand at 420.649 kb on + strand at 420.669 kb on + strand at 420.669 kb on + strand at 420.669 kb on + strand at 420.669 kb on + strand at 420.670 kb on - strand at 420.672 kb on + strand at 420.673 kb on - strand at 420.719 kb on + strand at 420.763 kb on + strand at 420.763 kb on + strand at 420.784 kb on + strand at 420.784 kb on + strand at 420.816 kb on - strand, within EX31_RS23300 at 420.944 kb on - strand, within EX31_RS23300 at 420.990 kb on + strand, within EX31_RS23300 at 420.990 kb on + strand, within EX31_RS23300 at 420.991 kb on - strand, within EX31_RS23300 at 420.991 kb on - strand, within EX31_RS23300 at 420.991 kb on - strand, within EX31_RS23300 at 421.070 kb on + strand, within EX31_RS23300 at 421.070 kb on + strand, within EX31_RS23300 at 421.070 kb on + strand, within EX31_RS23300 at 421.071 kb on - strand, within EX31_RS23300 at 421.071 kb on - strand, within EX31_RS23300 at 421.071 kb on - strand, within EX31_RS23300 at 421.071 kb on - strand, within EX31_RS23300 at 421.071 kb on - strand, within EX31_RS23300 at 421.071 kb on - strand, within EX31_RS23300 at 421.071 kb on - strand, within EX31_RS23300 at 421.081 kb on - strand, within EX31_RS23300 at 421.096 kb on - strand, within EX31_RS23300 at 421.201 kb on + strand, within EX31_RS23300 at 421.248 kb on + strand, within EX31_RS23300 at 421.346 kb on + strand, within EX31_RS23300 at 421.346 kb on + strand, within EX31_RS23300 at 421.346 kb on + strand, within EX31_RS23300 at 421.346 kb on + strand, within EX31_RS23300 at 421.346 kb on + strand, within EX31_RS23300 at 421.378 kb on + strand, within EX31_RS23300 at 421.424 kb on - strand, within EX31_RS23300 at 421.460 kb on + strand, within EX31_RS23300 at 421.460 kb on + strand, within EX31_RS23300 at 421.460 kb on + strand, within EX31_RS23300 at 421.461 kb on - strand, within EX31_RS23300 at 421.461 kb on - strand, within EX31_RS23300 at 421.511 kb on - strand, within EX31_RS23300 at 421.570 kb on + strand, within EX31_RS23300 at 421.687 kb on + strand, within EX31_RS23300 at 421.687 kb on + strand, within EX31_RS23300 at 421.976 kb on - strand, within EX31_RS23300 at 422.100 kb on + strand, within EX31_RS23300 at 422.101 kb on - strand, within EX31_RS23300 at 422.101 kb on - strand, within EX31_RS23300 at 422.167 kb on + strand at 422.167 kb on + strand at 422.168 kb on - strand at 422.168 kb on - strand at 422.168 kb on - strand at 422.179 kb on + strand at 422.179 kb on + strand at 422.179 kb on + strand at 422.180 kb on - strand at 422.186 kb on - strand at 422.314 kb on - strand at 422.317 kb on - strand at 422.317 kb on - strand at 422.323 kb on + strand at 422.324 kb on - strand at 422.391 kb on - strand at 422.435 kb on + strand, within EX31_RS23305 at 422.436 kb on - strand, within EX31_RS23305 at 422.456 kb on + strand, within EX31_RS23305 at 422.457 kb on - strand, within EX31_RS23305 at 422.457 kb on - strand, within EX31_RS23305 at 422.457 kb on - strand, within EX31_RS23305 at 422.466 kb on - strand, within EX31_RS23305 at 422.466 kb on - strand, within EX31_RS23305 at 422.466 kb on - strand, within EX31_RS23305 at 422.466 kb on - strand, within EX31_RS23305 at 422.544 kb on - strand, within EX31_RS23305 at 422.654 kb on + strand at 422.654 kb on + strand at 422.654 kb on + strand at 422.655 kb on - strand at 422.655 kb on - strand at 422.655 kb on - strand at 422.665 kb on - strand at 422.665 kb on - strand at 422.797 kb on - strand at 422.799 kb on - strand at 422.812 kb on - strand at 422.812 kb on - strand at 422.812 kb on - strand at 422.862 kb on - strand at 422.870 kb on - strand at 422.911 kb on - strand at 422.952 kb on + strand at 422.953 kb on - strand at 422.953 kb on - strand at 423.061 kb on + strand, within EX31_RS23310 at 423.062 kb on - strand, within EX31_RS23310 at 423.062 kb on - strand, within EX31_RS23310 at 423.062 kb on - strand, within EX31_RS23310 at 423.131 kb on + strand, within EX31_RS23310 at 423.131 kb on + strand, within EX31_RS23310 at 423.132 kb on - strand, within EX31_RS23310 at 423.132 kb on - strand, within EX31_RS23310 at 423.132 kb on - strand, within EX31_RS23310 at 423.132 kb on - strand, within EX31_RS23310 at 423.225 kb on + strand, within EX31_RS23310 at 423.225 kb on + strand, within EX31_RS23310 at 423.225 kb on + strand, within EX31_RS23310 at 423.225 kb on + strand, within EX31_RS23310 at 423.225 kb on + strand, within EX31_RS23310 at 423.226 kb on - strand, within EX31_RS23310 at 423.226 kb on - strand, within EX31_RS23310 at 423.226 kb on - strand, within EX31_RS23310 at 423.226 kb on - strand, within EX31_RS23310 at 423.226 kb on - strand, within EX31_RS23310 at 423.226 kb on - strand, within EX31_RS23310 at 423.226 kb on - strand, within EX31_RS23310 at 423.227 kb on + strand, within EX31_RS23310 at 423.227 kb on + strand, within EX31_RS23310 at 423.228 kb on - strand, within EX31_RS23310 at 423.228 kb on - strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.229 kb on + strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.230 kb on - strand, within EX31_RS23310 at 423.233 kb on + strand, within EX31_RS23310 at 423.233 kb on + strand, within EX31_RS23310 at 423.233 kb on + strand, within EX31_RS23310 at 423.233 kb on + strand, within EX31_RS23310 at 423.233 kb on + strand, within EX31_RS23310 at 423.233 kb on + strand, within EX31_RS23310 at 423.233 kb on + strand, within EX31_RS23310 at 423.234 kb on - strand, within EX31_RS23310 at 423.234 kb on - strand, within EX31_RS23310 at 423.234 kb on - strand, within EX31_RS23310 at 423.234 kb on - strand, within EX31_RS23310 at 423.234 kb on - strand, within EX31_RS23310 at 423.257 kb on + strand, within EX31_RS23310 at 423.291 kb on - strand, within EX31_RS23310
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 419,635 - +1.3 419,659 - +0.2 419,707 - +1.0 420,262 - +0.5 420,277 - +0.0 420,277 - +1.6 420,299 + +0.2 420,299 + +0.3 420,300 - -0.1 420,300 - +0.3 420,300 - -1.7 420,300 - +1.2 420,300 - -0.1 420,319 + +2.3 420,319 + +0.7 420,319 + +1.0 420,320 - -0.9 420,320 - +0.0 420,330 + +0.3 420,330 + -1.7 420,330 + -0.1 420,331 - +0.1 420,337 - +0.5 420,337 - -0.7 420,352 + -0.9 420,353 - +0.6 420,353 - +0.5 420,408 - -0.1 420,408 - +0.9 420,408 - +0.9 420,408 - -0.0 420,408 - +0.2 420,432 + +0.3 420,432 + +0.7 420,432 + +0.0 420,433 - -0.5 420,433 - -1.1 420,472 + +0.0 420,498 + +0.8 420,498 + -1.2 420,498 + +0.1 420,498 + -0.6 420,498 + +1.0 420,498 + +0.0 420,498 + +0.5 420,499 - +0.4 420,499 - +0.4 420,499 - +1.3 420,499 - -0.4 420,499 - -0.3 420,501 + -0.3 420,501 + +0.3 420,501 + +0.3 420,560 + +0.2 420,561 - -0.0 420,561 - -0.5 420,628 + -0.0 420,628 + -0.5 420,629 - +1.0 420,629 - +0.4 420,629 - +0.2 420,649 + -0.9 420,669 + -1.3 420,669 + -0.6 420,669 + -0.0 420,669 + -0.5 420,670 - -0.0 420,672 + +0.3 420,673 - +0.1 420,719 + +0.2 420,763 + +1.0 420,763 + -1.6 420,784 + +0.4 420,784 + -0.6 420,816 - EX31_RS23300 0.11 -0.5 420,944 - EX31_RS23300 0.19 +0.5 420,990 + EX31_RS23300 0.22 -1.0 420,990 + EX31_RS23300 0.22 -0.1 420,991 - EX31_RS23300 0.22 +1.2 420,991 - EX31_RS23300 0.22 +0.7 420,991 - EX31_RS23300 0.22 -0.1 421,070 + EX31_RS23300 0.26 +0.6 421,070 + EX31_RS23300 0.26 +0.8 421,070 + EX31_RS23300 0.26 +0.9 421,071 - EX31_RS23300 0.26 -1.0 421,071 - EX31_RS23300 0.26 +1.5 421,071 - EX31_RS23300 0.26 +0.1 421,071 - EX31_RS23300 0.26 +0.1 421,071 - EX31_RS23300 0.26 +1.9 421,071 - EX31_RS23300 0.26 +0.9 421,071 - EX31_RS23300 0.26 +0.2 421,081 - EX31_RS23300 0.27 -0.6 421,096 - EX31_RS23300 0.28 -0.1 421,201 + EX31_RS23300 0.34 +0.6 421,248 + EX31_RS23300 0.37 -0.4 421,346 + EX31_RS23300 0.43 -0.3 421,346 + EX31_RS23300 0.43 -0.4 421,346 + EX31_RS23300 0.43 +0.3 421,346 + EX31_RS23300 0.43 -0.8 421,346 + EX31_RS23300 0.43 +1.1 421,378 + EX31_RS23300 0.45 +0.1 421,424 - EX31_RS23300 0.48 +0.1 421,460 + EX31_RS23300 0.50 +0.7 421,460 + EX31_RS23300 0.50 +0.4 421,460 + EX31_RS23300 0.50 -0.1 421,461 - EX31_RS23300 0.50 +0.1 421,461 - EX31_RS23300 0.50 -0.1 421,511 - EX31_RS23300 0.53 +0.7 421,570 + EX31_RS23300 0.56 +0.1 421,687 + EX31_RS23300 0.63 +0.4 421,687 + EX31_RS23300 0.63 +1.1 421,976 - EX31_RS23300 0.81 +0.1 422,100 + EX31_RS23300 0.88 +0.5 422,101 - EX31_RS23300 0.88 +0.8 422,101 - EX31_RS23300 0.88 -0.1 422,167 + -0.5 422,167 + +0.1 422,168 - -0.7 422,168 - -1.3 422,168 - -0.4 422,179 + -0.7 422,179 + -0.0 422,179 + -1.2 422,180 - -0.1 422,186 - -1.0 422,314 - +0.1 422,317 - +0.3 422,317 - +0.2 422,323 + +0.9 422,324 - -0.6 422,391 - -0.0 422,435 + EX31_RS23305 0.22 +0.4 422,436 - EX31_RS23305 0.22 -0.2 422,456 + EX31_RS23305 0.29 +0.7 422,457 - EX31_RS23305 0.30 -1.0 422,457 - EX31_RS23305 0.30 -0.6 422,457 - EX31_RS23305 0.30 -0.6 422,466 - EX31_RS23305 0.33 -0.5 422,466 - EX31_RS23305 0.33 +0.5 422,466 - EX31_RS23305 0.33 -0.5 422,466 - EX31_RS23305 0.33 -0.1 422,544 - EX31_RS23305 0.61 +0.4 422,654 + -0.2 422,654 + +1.6 422,654 + +0.1 422,655 - -0.3 422,655 - -0.1 422,655 - +0.9 422,665 - -0.5 422,665 - +0.2 422,797 - -0.3 422,799 - -0.1 422,812 - +0.0 422,812 - -0.0 422,812 - +0.7 422,862 - -0.0 422,870 - -0.4 422,911 - +0.8 422,952 + +0.3 422,953 - +0.7 422,953 - +0.0 423,061 + EX31_RS23310 0.19 +0.1 423,062 - EX31_RS23310 0.19 -0.6 423,062 - EX31_RS23310 0.19 +0.4 423,062 - EX31_RS23310 0.19 -0.3 423,131 + EX31_RS23310 0.27 +0.7 423,131 + EX31_RS23310 0.27 +0.7 423,132 - EX31_RS23310 0.28 -1.0 423,132 - EX31_RS23310 0.28 -1.1 423,132 - EX31_RS23310 0.28 -0.7 423,132 - EX31_RS23310 0.28 +0.5 423,225 + EX31_RS23310 0.39 -0.6 423,225 + EX31_RS23310 0.39 +0.2 423,225 + EX31_RS23310 0.39 -0.6 423,225 + EX31_RS23310 0.39 -1.5 423,225 + EX31_RS23310 0.39 -2.7 423,226 - EX31_RS23310 0.40 +0.7 423,226 - EX31_RS23310 0.40 +0.2 423,226 - EX31_RS23310 0.40 -0.1 423,226 - EX31_RS23310 0.40 +0.3 423,226 - EX31_RS23310 0.40 -0.1 423,226 - EX31_RS23310 0.40 +1.1 423,226 - EX31_RS23310 0.40 +0.1 423,227 + EX31_RS23310 0.40 -0.5 423,227 + EX31_RS23310 0.40 +0.6 423,228 - EX31_RS23310 0.40 +0.2 423,228 - EX31_RS23310 0.40 +0.8 423,229 + EX31_RS23310 0.40 +0.3 423,229 + EX31_RS23310 0.40 +0.0 423,229 + EX31_RS23310 0.40 +0.3 423,229 + EX31_RS23310 0.40 +0.1 423,229 + EX31_RS23310 0.40 +0.4 423,229 + EX31_RS23310 0.40 +0.2 423,229 + EX31_RS23310 0.40 +0.6 423,229 + EX31_RS23310 0.40 +0.3 423,229 + EX31_RS23310 0.40 +0.5 423,229 + EX31_RS23310 0.40 -0.0 423,229 + EX31_RS23310 0.40 -0.7 423,229 + EX31_RS23310 0.40 -0.8 423,229 + EX31_RS23310 0.40 +1.5 423,229 + EX31_RS23310 0.40 +0.2 423,229 + EX31_RS23310 0.40 -2.7 423,229 + EX31_RS23310 0.40 -0.0 423,229 + EX31_RS23310 0.40 -0.4 423,229 + EX31_RS23310 0.40 -0.8 423,229 + EX31_RS23310 0.40 -0.1 423,229 + EX31_RS23310 0.40 +0.4 423,229 + EX31_RS23310 0.40 -0.8 423,230 - EX31_RS23310 0.40 +0.0 423,230 - EX31_RS23310 0.40 -0.4 423,230 - EX31_RS23310 0.40 +0.3 423,230 - EX31_RS23310 0.40 +1.0 423,230 - EX31_RS23310 0.40 -0.7 423,230 - EX31_RS23310 0.40 -0.1 423,230 - EX31_RS23310 0.40 +0.8 423,230 - EX31_RS23310 0.40 -0.8 423,230 - EX31_RS23310 0.40 +0.2 423,230 - EX31_RS23310 0.40 -0.3 423,230 - EX31_RS23310 0.40 +1.1 423,230 - EX31_RS23310 0.40 +0.4 423,230 - EX31_RS23310 0.40 -0.1 423,230 - EX31_RS23310 0.40 +0.1 423,230 - EX31_RS23310 0.40 -0.4 423,230 - EX31_RS23310 0.40 +0.1 423,230 - EX31_RS23310 0.40 -1.5 423,230 - EX31_RS23310 0.40 -0.7 423,230 - EX31_RS23310 0.40 +0.5 423,230 - EX31_RS23310 0.40 +0.7 423,230 - EX31_RS23310 0.40 -0.5 423,233 + EX31_RS23310 0.40 -0.1 423,233 + EX31_RS23310 0.40 +0.9 423,233 + EX31_RS23310 0.40 -0.4 423,233 + EX31_RS23310 0.40 -0.1 423,233 + EX31_RS23310 0.40 +0.1 423,233 + EX31_RS23310 0.40 +1.0 423,233 + EX31_RS23310 0.40 -0.6 423,234 - EX31_RS23310 0.41 +2.0 423,234 - EX31_RS23310 0.41 +0.6 423,234 - EX31_RS23310 0.41 -0.5 423,234 - EX31_RS23310 0.41 -0.7 423,234 - EX31_RS23310 0.41 +0.6 423,257 + EX31_RS23310 0.44 -1.1 423,291 - EX31_RS23310 0.48 +0.2
Or see this region's nucleotide sequence