Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16725 and EX31_RS16730 are separated by 147 nucleotides EX31_RS16730 and EX31_RS16735 are separated by 156 nucleotides
EX31_RS16725: EX31_RS16725 - phytanoyl-CoA dioxygenase, at 27,802 to 28,569
_RS16725
EX31_RS16730: EX31_RS16730 - LysR family transcriptional regulator, at 28,717 to 29,613
_RS16730
EX31_RS16735: EX31_RS16735 - pirin family protein, at 29,770 to 30,495
_RS16735
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.738 kb on - strand at 27.870 kb on + strand at 27.870 kb on + strand at 27.871 kb on - strand at 27.871 kb on - strand at 27.908 kb on + strand, within EX31_RS16725 at 27.909 kb on - strand, within EX31_RS16725 at 28.273 kb on - strand, within EX31_RS16725 at 28.471 kb on - strand, within EX31_RS16725 at 28.517 kb on - strand at 28.548 kb on - strand at 28.602 kb on + strand at 28.660 kb on + strand at 28.713 kb on + strand at 28.809 kb on - strand, within EX31_RS16730 at 28.853 kb on - strand, within EX31_RS16730 at 28.906 kb on + strand, within EX31_RS16730 at 29.226 kb on - strand, within EX31_RS16730 at 29.242 kb on + strand, within EX31_RS16730 at 29.242 kb on + strand, within EX31_RS16730 at 29.243 kb on - strand, within EX31_RS16730 at 29.243 kb on - strand, within EX31_RS16730 at 29.243 kb on - strand, within EX31_RS16730 at 29.337 kb on - strand, within EX31_RS16730 at 29.485 kb on + strand, within EX31_RS16730 at 29.486 kb on - strand, within EX31_RS16730 at 29.486 kb on - strand, within EX31_RS16730 at 29.523 kb on - strand, within EX31_RS16730 at 29.523 kb on - strand, within EX31_RS16730 at 29.523 kb on - strand, within EX31_RS16730 at 29.523 kb on - strand, within EX31_RS16730 at 29.559 kb on + strand at 29.645 kb on - strand at 29.962 kb on - strand, within EX31_RS16735 at 29.962 kb on - strand, within EX31_RS16735 at 29.968 kb on + strand, within EX31_RS16735 at 29.968 kb on + strand, within EX31_RS16735 at 29.968 kb on + strand, within EX31_RS16735 at 29.968 kb on + strand, within EX31_RS16735 at 29.969 kb on - strand, within EX31_RS16735 at 29.969 kb on - strand, within EX31_RS16735 at 29.969 kb on - strand, within EX31_RS16735 at 29.995 kb on - strand, within EX31_RS16735 at 30.266 kb on - strand, within EX31_RS16735 at 30.266 kb on - strand, within EX31_RS16735 at 30.329 kb on - strand, within EX31_RS16735 at 30.329 kb on - strand, within EX31_RS16735 at 30.329 kb on - strand, within EX31_RS16735 at 30.329 kb on - strand, within EX31_RS16735 at 30.533 kb on + strand at 30.534 kb on - strand at 30.536 kb on + strand at 30.567 kb on + strand at 30.567 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 27,738 - -0.1 27,870 + -0.4 27,870 + +0.6 27,871 - +0.2 27,871 - +0.6 27,908 + EX31_RS16725 0.14 +0.5 27,909 - EX31_RS16725 0.14 -0.9 28,273 - EX31_RS16725 0.61 +0.1 28,471 - EX31_RS16725 0.87 +0.2 28,517 - -0.2 28,548 - -0.0 28,602 + +0.1 28,660 + +0.1 28,713 + +1.6 28,809 - EX31_RS16730 0.10 -1.8 28,853 - EX31_RS16730 0.15 -1.9 28,906 + EX31_RS16730 0.21 -1.2 29,226 - EX31_RS16730 0.57 +0.5 29,242 + EX31_RS16730 0.59 +0.8 29,242 + EX31_RS16730 0.59 +0.5 29,243 - EX31_RS16730 0.59 +1.7 29,243 - EX31_RS16730 0.59 -0.1 29,243 - EX31_RS16730 0.59 -0.1 29,337 - EX31_RS16730 0.69 +0.5 29,485 + EX31_RS16730 0.86 +0.5 29,486 - EX31_RS16730 0.86 +1.5 29,486 - EX31_RS16730 0.86 +0.2 29,523 - EX31_RS16730 0.90 +0.5 29,523 - EX31_RS16730 0.90 +0.7 29,523 - EX31_RS16730 0.90 -0.8 29,523 - EX31_RS16730 0.90 +0.4 29,559 + +0.8 29,645 - +0.3 29,962 - EX31_RS16735 0.26 -2.5 29,962 - EX31_RS16735 0.26 -0.6 29,968 + EX31_RS16735 0.27 -0.9 29,968 + EX31_RS16735 0.27 -0.7 29,968 + EX31_RS16735 0.27 +1.3 29,968 + EX31_RS16735 0.27 +1.3 29,969 - EX31_RS16735 0.27 +1.8 29,969 - EX31_RS16735 0.27 +0.4 29,969 - EX31_RS16735 0.27 +1.0 29,995 - EX31_RS16735 0.31 +0.1 30,266 - EX31_RS16735 0.68 +1.4 30,266 - EX31_RS16735 0.68 -1.6 30,329 - EX31_RS16735 0.77 +0.9 30,329 - EX31_RS16735 0.77 -0.7 30,329 - EX31_RS16735 0.77 -1.2 30,329 - EX31_RS16735 0.77 -0.6 30,533 + +0.4 30,534 - +0.5 30,536 + +0.3 30,567 + -0.4 30,567 + -1.1
Or see this region's nucleotide sequence