Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19880 and EX31_RS19885 overlap by 1 nucleotides EX31_RS19885 and EX31_RS19890 overlap by 10 nucleotides EX31_RS19890 and EX31_RS19895 are separated by 30 nucleotides
EX31_RS19880: EX31_RS19880 - hydrogenase formation protein HypD, at 606,574 to 607,746
_RS19880
EX31_RS19885: EX31_RS19885 - HypC/HybG/HupF family hydrogenase formation chaperone, at 607,746 to 608,024
_RS19885
EX31_RS19890: EX31_RS19890 - hydrogenase nickel incorporation protein HypB, at 608,015 to 608,794
_RS19890
EX31_RS19895: EX31_RS19895 - hydrogenase maturation nickel metallochaperone HypA, at 608,825 to 609,169
_RS19895
Position (kb) 607
608
609 Strain fitness (log2 ratio) -2
-1
0
1 at 606.851 kb on + strand, within EX31_RS19880 at 606.852 kb on - strand, within EX31_RS19880 at 606.924 kb on + strand, within EX31_RS19880 at 607.002 kb on + strand, within EX31_RS19880 at 607.003 kb on - strand, within EX31_RS19880 at 607.116 kb on - strand, within EX31_RS19880 at 607.116 kb on - strand, within EX31_RS19880 at 607.116 kb on - strand, within EX31_RS19880 at 607.584 kb on + strand, within EX31_RS19880 at 607.614 kb on + strand, within EX31_RS19880 at 607.615 kb on - strand, within EX31_RS19880 at 607.661 kb on + strand at 607.662 kb on - strand at 607.662 kb on - strand at 607.662 kb on - strand at 607.670 kb on - strand at 607.875 kb on + strand, within EX31_RS19885 at 607.876 kb on - strand, within EX31_RS19885 at 607.876 kb on - strand, within EX31_RS19885 at 607.929 kb on - strand, within EX31_RS19885 at 607.929 kb on - strand, within EX31_RS19885 at 608.016 kb on + strand at 608.016 kb on + strand at 608.017 kb on - strand at 608.017 kb on - strand at 608.017 kb on - strand at 608.059 kb on + strand at 608.059 kb on + strand at 608.059 kb on + strand at 608.059 kb on + strand at 608.129 kb on - strand, within EX31_RS19890 at 608.206 kb on + strand, within EX31_RS19890 at 608.207 kb on - strand, within EX31_RS19890 at 608.335 kb on + strand, within EX31_RS19890 at 608.336 kb on - strand, within EX31_RS19890 at 608.477 kb on + strand, within EX31_RS19890 at 608.478 kb on - strand, within EX31_RS19890 at 608.478 kb on - strand, within EX31_RS19890 at 608.478 kb on - strand, within EX31_RS19890 at 608.478 kb on - strand, within EX31_RS19890 at 608.496 kb on + strand, within EX31_RS19890 at 608.496 kb on + strand, within EX31_RS19890 at 608.496 kb on + strand, within EX31_RS19890 at 608.497 kb on - strand, within EX31_RS19890 at 608.540 kb on - strand, within EX31_RS19890 at 608.540 kb on - strand, within EX31_RS19890 at 608.618 kb on - strand, within EX31_RS19890 at 608.618 kb on - strand, within EX31_RS19890 at 608.623 kb on + strand, within EX31_RS19890 at 608.623 kb on + strand, within EX31_RS19890 at 608.624 kb on - strand, within EX31_RS19890 at 608.785 kb on + strand at 608.794 kb on + strand at 608.794 kb on + strand at 608.794 kb on + strand at 608.794 kb on + strand at 608.794 kb on + strand at 608.794 kb on + strand at 608.794 kb on + strand at 608.794 kb on + strand at 608.794 kb on + strand at 608.795 kb on - strand at 608.795 kb on - strand at 608.795 kb on - strand at 608.795 kb on - strand at 608.795 kb on - strand at 608.795 kb on - strand at 608.795 kb on - strand at 608.795 kb on - strand at 608.795 kb on - strand at 608.795 kb on - strand at 608.795 kb on - strand at 608.925 kb on - strand, within EX31_RS19895 at 608.925 kb on - strand, within EX31_RS19895 at 608.949 kb on + strand, within EX31_RS19895 at 608.950 kb on - strand, within EX31_RS19895
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 606,851 + EX31_RS19880 0.24 +0.5 606,852 - EX31_RS19880 0.24 +0.3 606,924 + EX31_RS19880 0.30 -0.6 607,002 + EX31_RS19880 0.36 -0.7 607,003 - EX31_RS19880 0.37 -1.1 607,116 - EX31_RS19880 0.46 +0.1 607,116 - EX31_RS19880 0.46 +0.4 607,116 - EX31_RS19880 0.46 -0.1 607,584 + EX31_RS19880 0.86 +0.6 607,614 + EX31_RS19880 0.89 -0.4 607,615 - EX31_RS19880 0.89 +0.1 607,661 + +0.8 607,662 - -0.2 607,662 - +0.4 607,662 - +0.1 607,670 - -2.2 607,875 + EX31_RS19885 0.46 -0.3 607,876 - EX31_RS19885 0.47 -0.7 607,876 - EX31_RS19885 0.47 -0.3 607,929 - EX31_RS19885 0.66 -0.5 607,929 - EX31_RS19885 0.66 -0.3 608,016 + -0.1 608,016 + +0.4 608,017 - -0.1 608,017 - -0.4 608,017 - -0.8 608,059 + +0.6 608,059 + -0.4 608,059 + -0.4 608,059 + +0.3 608,129 - EX31_RS19890 0.15 -0.7 608,206 + EX31_RS19890 0.24 -0.1 608,207 - EX31_RS19890 0.25 +0.0 608,335 + EX31_RS19890 0.41 -1.3 608,336 - EX31_RS19890 0.41 +0.1 608,477 + EX31_RS19890 0.59 -0.3 608,478 - EX31_RS19890 0.59 -0.8 608,478 - EX31_RS19890 0.59 +0.6 608,478 - EX31_RS19890 0.59 +0.1 608,478 - EX31_RS19890 0.59 -0.2 608,496 + EX31_RS19890 0.62 -0.1 608,496 + EX31_RS19890 0.62 -0.9 608,496 + EX31_RS19890 0.62 +0.1 608,497 - EX31_RS19890 0.62 -0.5 608,540 - EX31_RS19890 0.67 +0.7 608,540 - EX31_RS19890 0.67 +0.6 608,618 - EX31_RS19890 0.77 -0.2 608,618 - EX31_RS19890 0.77 -1.0 608,623 + EX31_RS19890 0.78 -0.5 608,623 + EX31_RS19890 0.78 -0.0 608,624 - EX31_RS19890 0.78 -1.2 608,785 + -0.9 608,794 + -1.4 608,794 + -0.8 608,794 + -0.7 608,794 + +0.7 608,794 + +0.1 608,794 + -0.2 608,794 + +0.7 608,794 + -0.2 608,794 + +0.6 608,795 - +0.3 608,795 - -0.5 608,795 - +0.3 608,795 - +0.2 608,795 - -0.0 608,795 - -0.3 608,795 - -0.9 608,795 - -0.3 608,795 - -1.4 608,795 - +1.2 608,795 - +0.4 608,925 - EX31_RS19895 0.29 +0.3 608,925 - EX31_RS19895 0.29 +0.1 608,949 + EX31_RS19895 0.36 -1.8 608,950 - EX31_RS19895 0.36 +0.3
Or see this region's nucleotide sequence