Strain Fitness in Rahnella sp. WP5 around EX31_RS18315

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18310 and EX31_RS18315 are separated by 14 nucleotidesEX31_RS18315 and EX31_RS18320 overlap by 8 nucleotidesEX31_RS18320 and EX31_RS18325 are separated by 4 nucleotides EX31_RS18310: EX31_RS18310 - tail fiber protein, at 236,324 to 238,723 _RS18310 EX31_RS18315: EX31_RS18315 - phage tail protein I, at 238,738 to 239,268 _RS18315 EX31_RS18320: EX31_RS18320 - baseplate assembly protein, at 239,261 to 240,169 _RS18320 EX31_RS18325: EX31_RS18325 - baseplate assembly protein, at 240,174 to 240,524 _RS18325 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 237.844 kb on + strand, within EX31_RS18310at 237.845 kb on - strand, within EX31_RS18310at 237.845 kb on - strand, within EX31_RS18310at 237.845 kb on - strand, within EX31_RS18310at 237.845 kb on - strand, within EX31_RS18310at 237.846 kb on + strand, within EX31_RS18310at 237.847 kb on - strand, within EX31_RS18310at 237.857 kb on + strand, within EX31_RS18310at 237.857 kb on + strand, within EX31_RS18310at 237.857 kb on + strand, within EX31_RS18310at 237.857 kb on + strand, within EX31_RS18310at 237.857 kb on + strand, within EX31_RS18310at 237.857 kb on + strand, within EX31_RS18310at 237.857 kb on + strand, within EX31_RS18310at 237.858 kb on - strand, within EX31_RS18310at 237.858 kb on - strand, within EX31_RS18310at 237.881 kb on + strand, within EX31_RS18310at 237.882 kb on - strand, within EX31_RS18310at 237.893 kb on + strand, within EX31_RS18310at 237.963 kb on + strand, within EX31_RS18310at 237.963 kb on + strand, within EX31_RS18310at 237.964 kb on - strand, within EX31_RS18310at 237.964 kb on - strand, within EX31_RS18310at 237.985 kb on + strand, within EX31_RS18310at 238.005 kb on - strand, within EX31_RS18310at 238.271 kb on + strand, within EX31_RS18310at 238.271 kb on + strand, within EX31_RS18310at 238.272 kb on - strand, within EX31_RS18310at 238.272 kb on - strand, within EX31_RS18310at 238.275 kb on + strand, within EX31_RS18310at 238.275 kb on + strand, within EX31_RS18310at 238.275 kb on + strand, within EX31_RS18310at 238.276 kb on - strand, within EX31_RS18310at 238.276 kb on - strand, within EX31_RS18310at 238.276 kb on - strand, within EX31_RS18310at 238.364 kb on + strand, within EX31_RS18310at 238.364 kb on + strand, within EX31_RS18310at 238.396 kb on + strand, within EX31_RS18310at 238.446 kb on + strand, within EX31_RS18310at 238.446 kb on + strand, within EX31_RS18310at 238.446 kb on + strand, within EX31_RS18310at 238.446 kb on + strand, within EX31_RS18310at 238.446 kb on + strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.447 kb on - strand, within EX31_RS18310at 238.449 kb on - strand, within EX31_RS18310at 238.512 kb on + strandat 238.512 kb on + strandat 238.513 kb on - strandat 238.513 kb on - strandat 238.513 kb on - strandat 238.560 kb on + strandat 238.633 kb on + strandat 238.633 kb on + strandat 238.633 kb on + strandat 238.633 kb on + strandat 238.633 kb on + strandat 238.634 kb on - strandat 238.634 kb on - strandat 238.634 kb on - strandat 238.634 kb on - strandat 238.634 kb on - strandat 238.634 kb on - strandat 238.634 kb on - strandat 238.711 kb on + strandat 238.711 kb on + strandat 238.711 kb on + strandat 238.712 kb on - strandat 238.712 kb on - strandat 238.712 kb on - strandat 238.712 kb on - strandat 238.712 kb on - strandat 238.713 kb on + strandat 238.713 kb on + strandat 238.713 kb on + strandat 238.714 kb on - strandat 238.714 kb on - strandat 238.714 kb on - strandat 238.714 kb on - strandat 238.724 kb on - strandat 238.724 kb on - strandat 238.739 kb on + strandat 238.740 kb on - strandat 238.772 kb on + strandat 238.772 kb on + strandat 238.773 kb on - strandat 238.773 kb on - strandat 238.773 kb on - strandat 238.773 kb on - strandat 238.883 kb on + strand, within EX31_RS18315at 238.896 kb on + strand, within EX31_RS18315at 239.019 kb on + strand, within EX31_RS18315at 239.019 kb on + strand, within EX31_RS18315at 239.020 kb on - strand, within EX31_RS18315at 239.020 kb on - strand, within EX31_RS18315at 239.028 kb on + strand, within EX31_RS18315at 239.029 kb on - strand, within EX31_RS18315at 239.034 kb on + strand, within EX31_RS18315at 239.045 kb on + strand, within EX31_RS18315at 239.045 kb on + strand, within EX31_RS18315at 239.046 kb on - strand, within EX31_RS18315at 239.126 kb on + strand, within EX31_RS18315at 239.131 kb on + strand, within EX31_RS18315at 239.132 kb on - strand, within EX31_RS18315at 239.165 kb on - strand, within EX31_RS18315at 239.165 kb on - strand, within EX31_RS18315at 239.249 kb on - strandat 239.262 kb on + strandat 239.263 kb on - strandat 239.304 kb on + strandat 239.318 kb on - strandat 239.318 kb on - strandat 239.391 kb on + strand, within EX31_RS18320at 239.391 kb on + strand, within EX31_RS18320at 239.391 kb on + strand, within EX31_RS18320at 239.391 kb on + strand, within EX31_RS18320at 239.392 kb on - strand, within EX31_RS18320at 239.392 kb on - strand, within EX31_RS18320at 239.392 kb on - strand, within EX31_RS18320at 239.396 kb on - strand, within EX31_RS18320at 239.396 kb on - strand, within EX31_RS18320at 239.411 kb on - strand, within EX31_RS18320at 239.411 kb on - strand, within EX31_RS18320at 239.411 kb on - strand, within EX31_RS18320at 239.505 kb on + strand, within EX31_RS18320at 239.505 kb on + strand, within EX31_RS18320at 239.505 kb on + strand, within EX31_RS18320at 239.505 kb on + strand, within EX31_RS18320at 239.505 kb on + strand, within EX31_RS18320at 239.506 kb on - strand, within EX31_RS18320at 239.506 kb on - strand, within EX31_RS18320at 239.506 kb on - strand, within EX31_RS18320at 239.506 kb on - strand, within EX31_RS18320at 239.512 kb on + strand, within EX31_RS18320at 239.533 kb on + strand, within EX31_RS18320at 239.600 kb on - strand, within EX31_RS18320at 239.603 kb on + strand, within EX31_RS18320at 239.604 kb on - strand, within EX31_RS18320at 239.604 kb on - strand, within EX31_RS18320at 239.604 kb on - strand, within EX31_RS18320at 239.638 kb on + strand, within EX31_RS18320at 239.639 kb on - strand, within EX31_RS18320at 239.662 kb on + strand, within EX31_RS18320at 239.662 kb on + strand, within EX31_RS18320at 239.738 kb on - strand, within EX31_RS18320at 239.820 kb on - strand, within EX31_RS18320at 239.820 kb on - strand, within EX31_RS18320at 239.881 kb on + strand, within EX31_RS18320at 239.881 kb on + strand, within EX31_RS18320at 239.881 kb on + strand, within EX31_RS18320at 239.883 kb on + strand, within EX31_RS18320at 239.883 kb on + strand, within EX31_RS18320at 239.883 kb on + strand, within EX31_RS18320at 239.884 kb on - strand, within EX31_RS18320at 239.884 kb on - strand, within EX31_RS18320at 239.884 kb on - strand, within EX31_RS18320at 239.884 kb on - strand, within EX31_RS18320at 239.922 kb on + strand, within EX31_RS18320at 239.922 kb on + strand, within EX31_RS18320at 239.932 kb on + strand, within EX31_RS18320at 239.933 kb on - strand, within EX31_RS18320at 239.955 kb on - strand, within EX31_RS18320at 239.966 kb on + strand, within EX31_RS18320at 240.010 kb on + strand, within EX31_RS18320at 240.010 kb on + strand, within EX31_RS18320at 240.010 kb on + strand, within EX31_RS18320at 240.010 kb on + strand, within EX31_RS18320at 240.066 kb on + strand, within EX31_RS18320at 240.067 kb on - strand, within EX31_RS18320at 240.152 kb on + strandat 240.153 kb on - strandat 240.161 kb on - strandat 240.169 kb on + strandat 240.169 kb on + strandat 240.169 kb on + strandat 240.175 kb on + strandat 240.176 kb on - strandat 240.176 kb on - strandat 240.233 kb on + strand, within EX31_RS18325at 240.234 kb on - strand, within EX31_RS18325

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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237,844 + EX31_RS18310 0.63 +0.3
237,845 - EX31_RS18310 0.63 +0.1
237,845 - EX31_RS18310 0.63 +0.2
237,845 - EX31_RS18310 0.63 +0.2
237,845 - EX31_RS18310 0.63 -1.1
237,846 + EX31_RS18310 0.63 -0.5
237,847 - EX31_RS18310 0.63 +0.1
237,857 + EX31_RS18310 0.64 -0.2
237,857 + EX31_RS18310 0.64 -0.3
237,857 + EX31_RS18310 0.64 -0.0
237,857 + EX31_RS18310 0.64 +0.2
237,857 + EX31_RS18310 0.64 -0.4
237,857 + EX31_RS18310 0.64 -0.5
237,857 + EX31_RS18310 0.64 +0.5
237,858 - EX31_RS18310 0.64 +0.3
237,858 - EX31_RS18310 0.64 -0.0
237,881 + EX31_RS18310 0.65 +0.4
237,882 - EX31_RS18310 0.65 -1.1
237,893 + EX31_RS18310 0.65 +0.7
237,963 + EX31_RS18310 0.68 +0.5
237,963 + EX31_RS18310 0.68 -0.2
237,964 - EX31_RS18310 0.68 +0.4
237,964 - EX31_RS18310 0.68 -0.3
237,985 + EX31_RS18310 0.69 +0.3
238,005 - EX31_RS18310 0.70 -0.4
238,271 + EX31_RS18310 0.81 +0.2
238,271 + EX31_RS18310 0.81 +0.2
238,272 - EX31_RS18310 0.81 +0.1
238,272 - EX31_RS18310 0.81 -0.2
238,275 + EX31_RS18310 0.81 -1.2
238,275 + EX31_RS18310 0.81 -0.3
238,275 + EX31_RS18310 0.81 +1.4
238,276 - EX31_RS18310 0.81 +1.5
238,276 - EX31_RS18310 0.81 +0.4
238,276 - EX31_RS18310 0.81 -1.0
238,364 + EX31_RS18310 0.85 +0.2
238,364 + EX31_RS18310 0.85 +2.4
238,396 + EX31_RS18310 0.86 +0.7
238,446 + EX31_RS18310 0.88 +0.6
238,446 + EX31_RS18310 0.88 +0.4
238,446 + EX31_RS18310 0.88 +1.0
238,446 + EX31_RS18310 0.88 +0.1
238,446 + EX31_RS18310 0.88 -0.8
238,447 - EX31_RS18310 0.88 -0.1
238,447 - EX31_RS18310 0.88 +0.5
238,447 - EX31_RS18310 0.88 -0.3
238,447 - EX31_RS18310 0.88 +0.5
238,447 - EX31_RS18310 0.88 +0.0
238,447 - EX31_RS18310 0.88 +0.1
238,447 - EX31_RS18310 0.88 +0.1
238,447 - EX31_RS18310 0.88 +0.2
238,447 - EX31_RS18310 0.88 -0.4
238,447 - EX31_RS18310 0.88 +0.2
238,447 - EX31_RS18310 0.88 -0.1
238,447 - EX31_RS18310 0.88 -0.7
238,447 - EX31_RS18310 0.88 +0.4
238,449 - EX31_RS18310 0.89 -0.3
238,512 + -0.2
238,512 + +0.8
238,513 - -0.1
238,513 - -0.6
238,513 - -0.7
238,560 + -0.2
238,633 + -0.1
238,633 + -0.7
238,633 + +0.1
238,633 + +0.5
238,633 + +0.2
238,634 - +0.4
238,634 - -0.3
238,634 - +0.3
238,634 - -0.1
238,634 - -0.4
238,634 - +0.1
238,634 - -0.2
238,711 + +0.0
238,711 + -1.0
238,711 + -0.0
238,712 - +0.4
238,712 - +0.4
238,712 - -0.7
238,712 - +0.1
238,712 - -1.0
238,713 + +0.0
238,713 + -0.2
238,713 + +1.3
238,714 - +0.5
238,714 - -0.2
238,714 - +0.4
238,714 - +0.1
238,724 - +0.5
238,724 - +0.4
238,739 + -0.1
238,740 - -0.1
238,772 + -0.4
238,772 + -0.2
238,773 - +0.2
238,773 - +0.2
238,773 - -0.5
238,773 - +0.2
238,883 + EX31_RS18315 0.27 +0.4
238,896 + EX31_RS18315 0.30 -0.8
239,019 + EX31_RS18315 0.53 -0.3
239,019 + EX31_RS18315 0.53 -0.2
239,020 - EX31_RS18315 0.53 -0.3
239,020 - EX31_RS18315 0.53 -1.2
239,028 + EX31_RS18315 0.55 -0.2
239,029 - EX31_RS18315 0.55 -0.2
239,034 + EX31_RS18315 0.56 -0.9
239,045 + EX31_RS18315 0.58 -1.4
239,045 + EX31_RS18315 0.58 -0.1
239,046 - EX31_RS18315 0.58 -1.2
239,126 + EX31_RS18315 0.73 -0.5
239,131 + EX31_RS18315 0.74 -0.3
239,132 - EX31_RS18315 0.74 +0.2
239,165 - EX31_RS18315 0.80 +0.1
239,165 - EX31_RS18315 0.80 -0.5
239,249 - +0.5
239,262 + +0.1
239,263 - -0.4
239,304 + -0.4
239,318 - -0.5
239,318 - -1.2
239,391 + EX31_RS18320 0.14 +1.0
239,391 + EX31_RS18320 0.14 +1.3
239,391 + EX31_RS18320 0.14 +0.5
239,391 + EX31_RS18320 0.14 -0.0
239,392 - EX31_RS18320 0.14 +0.1
239,392 - EX31_RS18320 0.14 +0.6
239,392 - EX31_RS18320 0.14 -0.1
239,396 - EX31_RS18320 0.15 +0.1
239,396 - EX31_RS18320 0.15 -0.5
239,411 - EX31_RS18320 0.17 +1.5
239,411 - EX31_RS18320 0.17 -0.4
239,411 - EX31_RS18320 0.17 -0.3
239,505 + EX31_RS18320 0.27 -0.1
239,505 + EX31_RS18320 0.27 -1.0
239,505 + EX31_RS18320 0.27 -0.5
239,505 + EX31_RS18320 0.27 -0.5
239,505 + EX31_RS18320 0.27 +0.5
239,506 - EX31_RS18320 0.27 +0.6
239,506 - EX31_RS18320 0.27 +0.5
239,506 - EX31_RS18320 0.27 -0.2
239,506 - EX31_RS18320 0.27 +0.1
239,512 + EX31_RS18320 0.28 -0.3
239,533 + EX31_RS18320 0.30 +0.6
239,600 - EX31_RS18320 0.37 -0.4
239,603 + EX31_RS18320 0.38 -0.3
239,604 - EX31_RS18320 0.38 -0.1
239,604 - EX31_RS18320 0.38 +0.4
239,604 - EX31_RS18320 0.38 -1.1
239,638 + EX31_RS18320 0.41 +0.9
239,639 - EX31_RS18320 0.42 -0.6
239,662 + EX31_RS18320 0.44 -1.1
239,662 + EX31_RS18320 0.44 +1.2
239,738 - EX31_RS18320 0.52 +0.3
239,820 - EX31_RS18320 0.61 -0.2
239,820 - EX31_RS18320 0.61 +0.1
239,881 + EX31_RS18320 0.68 -0.6
239,881 + EX31_RS18320 0.68 -0.4
239,881 + EX31_RS18320 0.68 -0.2
239,883 + EX31_RS18320 0.68 +0.2
239,883 + EX31_RS18320 0.68 -0.4
239,883 + EX31_RS18320 0.68 +0.7
239,884 - EX31_RS18320 0.69 -0.4
239,884 - EX31_RS18320 0.69 +0.7
239,884 - EX31_RS18320 0.69 -0.3
239,884 - EX31_RS18320 0.69 -0.0
239,922 + EX31_RS18320 0.73 +0.3
239,922 + EX31_RS18320 0.73 -0.1
239,932 + EX31_RS18320 0.74 +0.5
239,933 - EX31_RS18320 0.74 +0.5
239,955 - EX31_RS18320 0.76 -1.3
239,966 + EX31_RS18320 0.78 +0.3
240,010 + EX31_RS18320 0.82 +0.8
240,010 + EX31_RS18320 0.82 -0.0
240,010 + EX31_RS18320 0.82 +0.6
240,010 + EX31_RS18320 0.82 -0.1
240,066 + EX31_RS18320 0.89 +0.7
240,067 - EX31_RS18320 0.89 -0.2
240,152 + -0.6
240,153 - -0.2
240,161 - +0.7
240,169 + +0.5
240,169 + -2.0
240,169 + +0.3
240,175 + +0.0
240,176 - -1.5
240,176 - -0.8
240,233 + EX31_RS18325 0.17 +0.4
240,234 - EX31_RS18325 0.17 +0.5

Or see this region's nucleotide sequence